RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 RPGRIP1LQ68CZ1 1315 aa16.36■□□□□ 0.21
C9orf3-220ENST00000489318 A2ML1A8K2U0 1454 aa16.35■□□□□ 0.21
C9orf3-220ENST00000489318 IDI1Q13907 227 aa16.35■□□□□ 0.21
C9orf3-220ENST00000489318 TNRQ92752 1358 aa16.35■□□□□ 0.21
C9orf3-220ENST00000489318 PIK3C2GO75747 1445 aa16.35■□□□□ 0.21
C9orf3-220ENST00000489318 SETBP1Q9Y6X0 1596 aa16.34■□□□□ 0.21
C9orf3-220ENST00000489318 ZNF142P52746 1687 aaPredicted RBP16.34■□□□□ 0.21
C9orf3-220ENST00000489318 KDM2AQ9Y2K7 1162 aa16.31■□□□□ 0.2
C9orf3-220ENST00000489318 ROCK2O75116 1388 aaKnown RBP16.29■□□□□ 0.2
C9orf3-220ENST00000489318 SETD1AO15047 1707 aaKnown RBP16.29■□□□□ 0.2
C9orf3-220ENST00000489318 ZNF326Q5BKZ1 582 aaKnown RBP16.29■□□□□ 0.2
C9orf3-220ENST00000489318 ADGRB1O14514 1584 aa16.29■□□□□ 0.2
C9orf3-220ENST00000489318 USP47Q96K76 1375 aa16.28■□□□□ 0.2
C9orf3-220ENST00000489318 CEP170BQ9Y4F5 1589 aaPredicted RBP16.27■□□□□ 0.2
C9orf3-220ENST00000489318 EIF4G2P78344 907 aaKnown RBP eCLIP16.27■□□□□ 0.2
C9orf3-220ENST00000489318 NRXN3Q9Y4C0 1643 aa16.27■□□□□ 0.19
C9orf3-220ENST00000489318 ADGRF5Q8IZF2 1346 aa16.26■□□□□ 0.19
C9orf3-220ENST00000489318 SLIT1O75093 1534 aa16.26■□□□□ 0.19
C9orf3-220ENST00000489318 ARHGAP23Q9P227 1491 aa16.25■□□□□ 0.19
C9orf3-220ENST00000489318 CHGAP10645 457 aaKnown RBP16.25■□□□□ 0.19
C9orf3-220ENST00000489318 HSPA5P11021 654 aaKnown RBP16.25■□□□□ 0.19
C9orf3-220ENST00000489318 ASXL1Q8IXJ9 1541 aa16.24■□□□□ 0.19
C9orf3-220ENST00000489318 SCAF11Q99590 1463 aaKnown RBP16.24■□□□□ 0.19
C9orf3-220ENST00000489318 RIMS2Q9UQ26 1411 aa16.24■□□□□ 0.19
C9orf3-220ENST00000489318 PTPRMP28827 1452 aa16.23■□□□□ 0.19
C9orf3-220ENST00000489318 CARD11Q9BXL7 1154 aa16.23■□□□□ 0.19
C9orf3-220ENST00000489318 VGFO15240 615 aaPredicted RBP16.22■□□□□ 0.19
C9orf3-220ENST00000489318 CEBPAP49715 358 aaPredicted RBP16.22■□□□□ 0.19
C9orf3-220ENST00000489318 NBPF1Q3BBV0 1214 aa16.22■□□□□ 0.19
C9orf3-220ENST00000489318 SETD1BQ9UPS6 1966 aaKnown RBP16.22■□□□□ 0.19
C9orf3-220ENST00000489318 ARHGEF28Q8N1W1 1705 aaKnown RBP16.21■□□□□ 0.19
C9orf3-220ENST00000489318 TMEM2Q9UHN6 1383 aa16.21■□□□□ 0.19
C9orf3-220ENST00000489318 ALKQ9UM73 1620 aa16.2■□□□□ 0.18
C9orf3-220ENST00000489318 C14orf93Q9H972 538 aaKnown RBP16.2■□□□□ 0.18
C9orf3-220ENST00000489318 STAG3Q9UJ98 1225 aa16.18■□□□□ 0.18
C9orf3-220ENST00000489318 KNDC1Q76NI1 1749 aa16.17■□□□□ 0.18
C9orf3-220ENST00000489318 CFAP70Q5T0N1 1121 aa16.17■□□□□ 0.18
C9orf3-220ENST00000489318 EIF3AQ14152 1382 aaKnown RBP16.16■□□□□ 0.18
C9orf3-220ENST00000489318 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.16■□□□□ 0.18
C9orf3-220ENST00000489318 QRICH2Q9H0J4 1663 aa16.15■□□□□ 0.18
C9orf3-220ENST00000489318 DIP2AQ14689 1571 aa16.15■□□□□ 0.18
C9orf3-220ENST00000489318 HIRIP3Q9BW71 556 aaPredicted RBP16.15■□□□□ 0.18
C9orf3-220ENST00000489318 CCDC7Q96M83 1385 aa16.14■□□□□ 0.17
C9orf3-220ENST00000489318 SBNO2Q9Y2G9 1366 aa16.14■□□□□ 0.17
C9orf3-220ENST00000489318 DLC1Q96QB1 1528 aa16.14■□□□□ 0.17
C9orf3-220ENST00000489318 PLEKHG1Q9ULL1 1385 aa16.13■□□□□ 0.17
C9orf3-220ENST00000489318 DIEXFQ68CQ4 756 aaKnown RBP16.13■□□□□ 0.17
C9orf3-220ENST00000489318 WASHC2AQ641Q2 1341 aa16.13■□□□□ 0.17
C9orf3-220ENST00000489318 MED14O60244 1454 aa16.12■□□□□ 0.17
C9orf3-220ENST00000489318 ST20-MTHFSA0A0A6YYL1 179 aa16.12■□□□□ 0.17
C9orf3-220ENST00000489318 HDGFP51858 240 aaKnown RBP16.11■□□□□ 0.17
C9orf3-220ENST00000489318 TESK2Q96S53 571 aa16.11■□□□□ 0.17
C9orf3-220ENST00000489318 ADAMTS13Q76LX8 1427 aa16.11■□□□□ 0.17
C9orf3-220ENST00000489318 NUTM2DQ5VT03 806 aaPredicted RBP16.1■□□□□ 0.17
C9orf3-220ENST00000489318 KIF7Q2M1P5 1343 aa16.1■□□□□ 0.17
C9orf3-220ENST00000489318 CPS1P31327 1500 aa16.09■□□□□ 0.17
C9orf3-220ENST00000489318 C11orf95C9JLR9 678 aaPredicted RBP16.09■□□□□ 0.17
C9orf3-220ENST00000489318 THEMISQ8N1K5 641 aaPredicted RBP16.09■□□□□ 0.17
C9orf3-220ENST00000489318 YTHDC2Q9H6S0 1430 aaKnown RBP16.09■□□□□ 0.17
C9orf3-220ENST00000489318 TECPR2O15040 1411 aa16.08■□□□□ 0.16
C9orf3-220ENST00000489318 MYOM1P52179 1685 aa16.08■□□□□ 0.16
C9orf3-220ENST00000489318 LRPPRCP42704 1394 aaKnown RBP16.05■□□□□ 0.16
C9orf3-220ENST00000489318 DISP3Q9P2K9 1392 aa16.05■□□□□ 0.16
C9orf3-220ENST00000489318 LTKP29376 864 aa16.05■□□□□ 0.16
C9orf3-220ENST00000489318 XRN1Q8IZH2 1706 aaKnown RBP16.05■□□□□ 0.16
C9orf3-220ENST00000489318 PLPPR3Q6T4P5 718 aa16.04■□□□□ 0.16
C9orf3-220ENST00000489318 SLC24A1O60721 1099 aa16.03■□□□□ 0.16
C9orf3-220ENST00000489318 TMEM132EQ6IEE7 984 aa16.03■□□□□ 0.16
C9orf3-220ENST00000489318 EID1Q9Y6B2 187 aa16.03■□□□□ 0.16
C9orf3-220ENST00000489318 ABCC11Q96J66 1382 aa16.02■□□□□ 0.16
C9orf3-220ENST00000489318 CENPJQ9HC77 1338 aaPredicted RBP16.02■□□□□ 0.16
C9orf3-220ENST00000489318 TULP4Q9NRJ4 1543 aa16.02■□□□□ 0.15
C9orf3-220ENST00000489318 METP08581 1390 aa16.01■□□□□ 0.15
C9orf3-220ENST00000489318 KDM4FA0A1W2PPD8 638 aa16.01■□□□□ 0.15
C9orf3-220ENST00000489318 DDX10Q13206 875 aaKnown RBP16.01■□□□□ 0.15
C9orf3-220ENST00000489318 TXNDC2Q86VQ3 553 aa16.01■□□□□ 0.15
C9orf3-220ENST00000489318 FAM135BQ49AJ0 1406 aa16.01■□□□□ 0.15
C9orf3-220ENST00000489318 TMF1P82094 1093 aa16■□□□□ 0.15
C9orf3-220ENST00000489318 ADGRB2O60241 1585 aa16■□□□□ 0.15
C9orf3-220ENST00000489318 TRAK1Q9UPV9 953 aa15.99■□□□□ 0.15
C9orf3-220ENST00000489318 PIK3R4Q99570 1358 aa15.99■□□□□ 0.15
C9orf3-220ENST00000489318 CHD2O14647 1828 aaKnown RBP15.98■□□□□ 0.15
C9orf3-220ENST00000489318 PTCH1Q13635 1447 aa15.98■□□□□ 0.15
C9orf3-220ENST00000489318 LMTK3Q96Q04 1460 aa15.97■□□□□ 0.15
C9orf3-220ENST00000489318 NWD1Q149M9 1564 aa15.96■□□□□ 0.15
C9orf3-220ENST00000489318 PTPRUQ92729 1446 aa15.96■□□□□ 0.15
C9orf3-220ENST00000489318 CDCA8Q53HL2 280 aa15.96■□□□□ 0.15
C9orf3-220ENST00000489318 SIRT1Q96EB6 747 aa15.96■□□□□ 0.15
C9orf3-220ENST00000489318 TBX22Q9Y458 520 aa15.96■□□□□ 0.15
C9orf3-220ENST00000489318 NPHP4O75161 1426 aaPredicted RBP15.95■□□□□ 0.14
C9orf3-220ENST00000489318 ANKLE2Q86XL3 938 aa15.94■□□□□ 0.14
C9orf3-220ENST00000489318 PUS7Q96PZ0 661 aaKnown RBP15.94■□□□□ 0.14
C9orf3-220ENST00000489318 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.92■□□□□ 0.14
C9orf3-220ENST00000489318 ROBO2Q9HCK4 1378 aa15.9■□□□□ 0.14
C9orf3-220ENST00000489318 PLEKHH1Q9ULM0 1364 aa15.9■□□□□ 0.14
C9orf3-220ENST00000489318 PRAM1Q96QH2 718 aa15.9■□□□□ 0.14
C9orf3-220ENST00000489318 SENP3Q9H4L4 574 aaPredicted RBP15.9■□□□□ 0.14
C9orf3-220ENST00000489318 STK26Q9P289 416 aa15.9■□□□□ 0.14
C9orf3-220ENST00000489318 USP32Q8NFA0 1604 aa15.9■□□□□ 0.14
C9orf3-220ENST00000489318 STRCQ7RTU9 1775 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms