RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 HDGFP51858 240 aaKnown RBP10.2□□□□□ -0.78
PTCH1-211ENST00000488809 KANK4Q5T7N3 995 aaPredicted RBP10.2□□□□□ -0.78
PTCH1-211ENST00000488809 RPRD2Q5VT52 1461 aaKnown RBP10.2□□□□□ -0.78
PTCH1-211ENST00000488809 POTEAQ6S8J7 498 aa10.2□□□□□ -0.78
PTCH1-211ENST00000488809 SLC26A8Q96RN1 970 aa10.2□□□□□ -0.78
PTCH1-211ENST00000488809 NOS1P29475 1434 aa10.19□□□□□ -0.78
PTCH1-211ENST00000488809 COL16A1Q07092 1604 aaPredicted RBP10.18□□□□□ -0.78
PTCH1-211ENST00000488809 PPP1R15AO75807 674 aaPredicted RBP10.18□□□□□ -0.78
PTCH1-211ENST00000488809 SLAIN2Q9P270 581 aa10.18□□□□□ -0.78
PTCH1-211ENST00000488809 SHPRHQ149N8 1683 aa10.18□□□□□ -0.78
PTCH1-211ENST00000488809 FGD6Q6ZV73 1430 aa10.17□□□□□ -0.78
PTCH1-211ENST00000488809 NCOA3Q9Y6Q9 1424 aa10.17□□□□□ -0.78
PTCH1-211ENST00000488809 PLEKHG1Q9ULL1 1385 aa10.17□□□□□ -0.78
PTCH1-211ENST00000488809 SPATA31A6Q5VVP1 1343 aa10.17□□□□□ -0.78
PTCH1-211ENST00000488809 DIP2AQ14689 1571 aa10.17□□□□□ -0.78
PTCH1-211ENST00000488809 MEX3CQ5U5Q3 659 aaKnown RBP10.16□□□□□ -0.78
PTCH1-211ENST00000488809 RBM33Q96EV2 1170 aaKnown RBP10.16□□□□□ -0.78
PTCH1-211ENST00000488809 ADGRL2O95490 1459 aa10.16□□□□□ -0.78
PTCH1-211ENST00000488809 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.16□□□□□ -0.78
PTCH1-211ENST00000488809 TMEM131LA2VDJ0 1609 aa10.15□□□□□ -0.78
PTCH1-211ENST00000488809 AHDC1Q5TGY3 1603 aaPredicted RBP10.15□□□□□ -0.78
PTCH1-211ENST00000488809 ZNF772Q68DY9 489 aaPredicted RBP10.15□□□□□ -0.78
PTCH1-211ENST00000488809 C14orf37Q86TY3 774 aa10.15□□□□□ -0.78
PTCH1-211ENST00000488809 ZFYVE9O95405 1425 aa10.15□□□□□ -0.79
PTCH1-211ENST00000488809 RIMS2Q9UQ26 1411 aa10.15□□□□□ -0.79
PTCH1-211ENST00000488809 CADPS2Q86UW7 1296 aa10.14□□□□□ -0.79
PTCH1-211ENST00000488809 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.14□□□□□ -0.79
PTCH1-211ENST00000488809 CHIC2Q9UKJ5 165 aa10.14□□□□□ -0.79
PTCH1-211ENST00000488809 ATF3P18847 181 aa10.13□□□□□ -0.79
PTCH1-211ENST00000488809 ANKRD50Q9ULJ7 1429 aa10.13□□□□□ -0.79
PTCH1-211ENST00000488809 PIK3R4Q99570 1358 aa10.13□□□□□ -0.79
PTCH1-211ENST00000488809 TRPM2O94759 1503 aa10.12□□□□□ -0.79
PTCH1-211ENST00000488809 TBX22Q9Y458 520 aa10.12□□□□□ -0.79
PTCH1-211ENST00000488809 UNC13BO14795 1591 aa10.12□□□□□ -0.79
PTCH1-211ENST00000488809 C19orf44Q9H6X5 657 aa10.11□□□□□ -0.79
PTCH1-211ENST00000488809 E9PCH4 1651 aa10.11□□□□□ -0.79
PTCH1-211ENST00000488809 LRP6O75581 1613 aa10.11□□□□□ -0.79
PTCH1-211ENST00000488809 CHGAP10645 457 aaKnown RBP10.1□□□□□ -0.79
PTCH1-211ENST00000488809 CDK12Q9NYV4 1490 aaPredicted RBP10.1□□□□□ -0.79
PTCH1-211ENST00000488809 DCCP43146 1447 aa10.09□□□□□ -0.79
PTCH1-211ENST00000488809 LOC105371045A0A1W2PR82 267 aa10.09□□□□□ -0.79
PTCH1-211ENST00000488809 RXRBP28702 533 aa10.09□□□□□ -0.79
PTCH1-211ENST00000488809 UPF1Q92900 1129 aaKnown RBP eCLIP10.09□□□□□ -0.79
PTCH1-211ENST00000488809 TRIM52Q96A61 297 aa10.09□□□□□ -0.79
PTCH1-211ENST00000488809 NHSL1Q5SYE7 1610 aa10.08□□□□□ -0.8
PTCH1-211ENST00000488809 IQGAP3Q86VI3 1631 aa10.08□□□□□ -0.8
PTCH1-211ENST00000488809 ADAMTS13Q76LX8 1427 aa10.07□□□□□ -0.8
PTCH1-211ENST00000488809 FAM50AQ14320 339 aaKnown RBP10.07□□□□□ -0.8
PTCH1-211ENST00000488809 SPHKAPQ2M3C7 1700 aa10.06□□□□□ -0.8
PTCH1-211ENST00000488809 XRN1Q8IZH2 1706 aaKnown RBP10.06□□□□□ -0.8
PTCH1-211ENST00000488809 ASXL1Q8IXJ9 1541 aa10.06□□□□□ -0.8
PTCH1-211ENST00000488809 BRINP3Q76B58 766 aa10.05□□□□□ -0.8
PTCH1-211ENST00000488809 SETD5Q9C0A6 1442 aa10.05□□□□□ -0.8
PTCH1-211ENST00000488809 NUTM2BA6NNL0 878 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-211ENST00000488809 NUTM2EB1AL46 878 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-211ENST00000488809 NUTM2AQ8IVF1 878 aaPredicted RBP10.04□□□□□ -0.8
PTCH1-211ENST00000488809 AMOTL2Q9Y2J4 779 aa10.04□□□□□ -0.8
PTCH1-211ENST00000488809 SETBP1Q9Y6X0 1596 aa10.04□□□□□ -0.8
PTCH1-211ENST00000488809 FOXD1Q16676 465 aa10.03□□□□□ -0.8
PTCH1-211ENST00000488809 NUTM2DQ5VT03 806 aaPredicted RBP10.03□□□□□ -0.8
PTCH1-211ENST00000488809 LRRC59Q96AG4 307 aaKnown RBP10.03□□□□□ -0.8
PTCH1-211ENST00000488809 NRXN3Q9Y4C0 1643 aa10.03□□□□□ -0.8
PTCH1-211ENST00000488809 AFF2P51816 1311 aa10.03□□□□□ -0.8
PTCH1-211ENST00000488809 KIF1BO60333 1816 aa10.03□□□□□ -0.8
PTCH1-211ENST00000488809 NALCNQ8IZF0 1738 aa10.02□□□□□ -0.81
PTCH1-211ENST00000488809 ROCK1Q13464 1354 aa10.01□□□□□ -0.81
PTCH1-211ENST00000488809 MST1RQ04912 1400 aa10.01□□□□□ -0.81
PTCH1-211ENST00000488809 PTPRUQ92729 1446 aa10.01□□□□□ -0.81
PTCH1-211ENST00000488809 RBM6P78332 1123 aaKnown RBP10.01□□□□□ -0.81
PTCH1-211ENST00000488809 NGLY1Q96IV0 654 aa10.01□□□□□ -0.81
PTCH1-211ENST00000488809 C8orf37Q96NL8 207 aa10□□□□□ -0.81
PTCH1-211ENST00000488809 NUP155O75694 1391 aa10□□□□□ -0.81
PTCH1-211ENST00000488809 RGS12O14924 1447 aa9.99□□□□□ -0.81
PTCH1-211ENST00000488809 ADGRL3Q9HAR2 1447 aa9.99□□□□□ -0.81
PTCH1-211ENST00000488809 ZNF326Q5BKZ1 582 aaKnown RBP9.99□□□□□ -0.81
PTCH1-211ENST00000488809 LAMC1P11047 1609 aa9.99□□□□□ -0.81
PTCH1-211ENST00000488809 PNPLA6Q8IY17 1366 aa9.99□□□□□ -0.81
PTCH1-211ENST00000488809 QTRT2Q9H974 415 aaKnown RBP9.98□□□□□ -0.81
PTCH1-211ENST00000488809 ATAD2Q6PL18 1390 aa9.98□□□□□ -0.81
PTCH1-211ENST00000488809 MARF1Q9Y4F3 1742 aaKnown RBP9.97□□□□□ -0.81
PTCH1-211ENST00000488809 NEXMIFQ5QGS0 1516 aa9.96□□□□□ -0.82
PTCH1-211ENST00000488809 TRPC5Q9UL62 973 aaPredicted RBP9.95□□□□□ -0.82
PTCH1-211ENST00000488809 METP08581 1390 aa9.95□□□□□ -0.82
PTCH1-211ENST00000488809 PTCH1Q13635 1447 aa9.95□□□□□ -0.82
PTCH1-211ENST00000488809 C1orf167Q5SNV9 1468 aa9.95□□□□□ -0.82
PTCH1-211ENST00000488809 COL22A1Q8NFW1 1626 aaPredicted RBP9.95□□□□□ -0.82
PTCH1-211ENST00000488809 CLTCL1P53675 1640 aa9.94□□□□□ -0.82
PTCH1-211ENST00000488809 ADAMTS2O95450 1211 aa9.94□□□□□ -0.82
PTCH1-211ENST00000488809 USP21Q9UK80 565 aa9.93□□□□□ -0.82
PTCH1-211ENST00000488809 DDX17Q92841 729 aaKnown RBP9.92□□□□□ -0.82
PTCH1-211ENST00000488809 ZRANB1Q9UGI0 708 aa9.92□□□□□ -0.82
PTCH1-211ENST00000488809 PPLO60437 1756 aa9.91□□□□□ -0.82
PTCH1-211ENST00000488809 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.91□□□□□ -0.82
PTCH1-211ENST00000488809 SOS2Q07890 1332 aaPredicted RBP9.91□□□□□ -0.82
PTCH1-211ENST00000488809 ITGAEP38570 1179 aa9.91□□□□□ -0.82
PTCH1-211ENST00000488809 CCDC125Q86Z20 511 aa9.91□□□□□ -0.82
PTCH1-211ENST00000488809 HFM1A2PYH4 1435 aa9.9□□□□□ -0.82
PTCH1-211ENST00000488809 PRAG1Q86YV5 1406 aa9.9□□□□□ -0.82
PTCH1-211ENST00000488809 EP400Q96L91 3159 aa9.9□□□□□ -0.82
PTCH1-211ENST00000488809 VGFO15240 615 aaPredicted RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms