RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 NBPF3Q9H094 633 aa11.79□□□□□ -0.52
USP48-209ENST00000487880 FAM217BQ9NTX9 383 aaPredicted RBP11.77□□□□□ -0.53
USP48-209ENST00000487880 MS4A1P11836 297 aa11.76□□□□□ -0.53
USP48-209ENST00000487880 ANKRD13DQ6ZTN6 518 aa11.76□□□□□ -0.53
USP48-209ENST00000487880 DAXXQ9UER7 740 aaPredicted RBP11.76□□□□□ -0.53
USP48-209ENST00000487880 FAM117AQ9C073 453 aa11.73□□□□□ -0.53
USP48-209ENST00000487880 SSTR3P32745 418 aaPredicted RBP11.72□□□□□ -0.53
USP48-209ENST00000487880 TMEM132AQ24JP5 1023 aa11.72□□□□□ -0.53
USP48-209ENST00000487880 MRPL50Q8N5N7 158 aaKnown RBP11.72□□□□□ -0.53
USP48-209ENST00000487880 PLEKHG3A1L390 1219 aa11.7□□□□□ -0.54
USP48-209ENST00000487880 SWT1Q5T5J6 900 aaKnown RBP11.7□□□□□ -0.54
USP48-209ENST00000487880 DDRGK1Q96HY6 314 aa11.7□□□□□ -0.54
USP48-209ENST00000487880 ZFRQ96KR1 1074 aaKnown RBP11.7□□□□□ -0.54
USP48-209ENST00000487880 SAMD7Q7Z3H4 446 aa11.68□□□□□ -0.54
USP48-209ENST00000487880 SULF1Q8IWU6 871 aa11.68□□□□□ -0.54
USP48-209ENST00000487880 CD46P15529 392 aa11.67□□□□□ -0.54
USP48-209ENST00000487880 IL27Q8NEV9 243 aa11.67□□□□□ -0.54
USP48-209ENST00000487880 DDX11L8A8MPP1 907 aa11.65□□□□□ -0.54
USP48-209ENST00000487880 BEGAINQ9BUH8 593 aa11.65□□□□□ -0.54
USP48-209ENST00000487880 HDGFP51858 240 aaKnown RBP11.64□□□□□ -0.55
USP48-209ENST00000487880 SLC10A3P09131 477 aa11.63□□□□□ -0.55
USP48-209ENST00000487880 RNF166Q96A37 237 aaPredicted RBP11.63□□□□□ -0.55
USP48-209ENST00000487880 STAC3Q96MF2 364 aa11.63□□□□□ -0.55
USP48-209ENST00000487880 SLF2Q8IX21 1173 aa11.62□□□□□ -0.55
USP48-209ENST00000487880 ANKK1Q8NFD2 765 aa11.61□□□□□ -0.55
USP48-209ENST00000487880 LRCH3Q96II8 777 aa11.61□□□□□ -0.55
USP48-209ENST00000487880 MYT1LQ9UL68 1186 aa11.61□□□□□ -0.55
USP48-209ENST00000487880 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.6□□□□□ -0.55
USP48-209ENST00000487880 SOWAHBA6NEL2 793 aa11.59□□□□□ -0.55
USP48-209ENST00000487880 GOLGA8CPA6NN73 597 aa11.59□□□□□ -0.55
USP48-209ENST00000487880 SLC4A3P48751 1232 aa11.59□□□□□ -0.55
USP48-209ENST00000487880 RSPH4AQ5TD94 716 aa11.59□□□□□ -0.55
USP48-209ENST00000487880 RDH13Q8NBN7 331 aa11.59□□□□□ -0.55
USP48-209ENST00000487880 WNT2BQ93097 391 aa11.58□□□□□ -0.56
USP48-209ENST00000487880 GOPCQ9HD26 462 aa11.58□□□□□ -0.56
USP48-209ENST00000487880 GCGRP47871 477 aa11.57□□□□□ -0.56
USP48-209ENST00000487880 BCAMP50895 628 aa11.56□□□□□ -0.56
USP48-209ENST00000487880 SH3D19Q5HYK7 790 aa11.56□□□□□ -0.56
USP48-209ENST00000487880 SPIRE2Q8WWL2 714 aa11.55□□□□□ -0.56
USP48-209ENST00000487880 TBC1D2Q9BYX2 928 aa11.55□□□□□ -0.56
USP48-209ENST00000487880 RSPH6AQ9H0K4 717 aa11.55□□□□□ -0.56
USP48-209ENST00000487880 RNF40O75150 1001 aa11.54□□□□□ -0.56
USP48-209ENST00000487880 CFHP08603 1231 aa11.54□□□□□ -0.56
USP48-209ENST00000487880 DIXDC1Q155Q3 683 aa11.54□□□□□ -0.56
USP48-209ENST00000487880 NECTIN2Q92692 538 aa11.54□□□□□ -0.56
USP48-209ENST00000487880 MYSM1Q5VVJ2 828 aa11.53□□□□□ -0.56
USP48-209ENST00000487880 THSD4Q6ZMP0 1018 aa11.53□□□□□ -0.56
USP48-209ENST00000487880 KDM4AO75164 1064 aa11.52□□□□□ -0.57
USP48-209ENST00000487880 TSR3Q9UJK0 312 aaKnown RBP11.52□□□□□ -0.57
USP48-209ENST00000487880 HPS5Q9UPZ3 1129 aa11.52□□□□□ -0.57
USP48-209ENST00000487880 USP46P62068 366 aa11.51□□□□□ -0.57
USP48-209ENST00000487880 SKIV2LQ15477 1246 aaKnown RBP11.51□□□□□ -0.57
USP48-209ENST00000487880 NUTM1Q86Y26 1132 aa11.51□□□□□ -0.57
USP48-209ENST00000487880 KCTD12Q96CX2 325 aaKnown RBP11.5□□□□□ -0.57
USP48-209ENST00000487880 HOXA2O43364 376 aa11.48□□□□□ -0.57
USP48-209ENST00000487880 GJA5P36382 358 aa11.48□□□□□ -0.57
USP48-209ENST00000487880 PPP4CP60510 307 aa11.48□□□□□ -0.57
USP48-209ENST00000487880 MOXD2PA6NHM9 499 aa11.47□□□□□ -0.57
USP48-209ENST00000487880 ACTN4O43707 911 aaKnown RBP11.47□□□□□ -0.57
USP48-209ENST00000487880 KMT5BQ4FZB7 885 aa11.47□□□□□ -0.57
USP48-209ENST00000487880 WBP1LQ9NX94 342 aa11.47□□□□□ -0.57
USP48-209ENST00000487880 SPTLC1O15269 473 aa11.46□□□□□ -0.57
USP48-209ENST00000487880 CLK2P49760 499 aaKnown RBP11.46□□□□□ -0.57
USP48-209ENST00000487880 APLP1P51693 650 aa11.46□□□□□ -0.57
USP48-209ENST00000487880 FUT2Q10981 343 aa11.46□□□□□ -0.57
USP48-209ENST00000487880 RSBN1LQ6PCB5 846 aaPredicted RBP11.46□□□□□ -0.57
USP48-209ENST00000487880 PRR14Q9BWN1 585 aa11.46□□□□□ -0.57
USP48-209ENST00000487880 TUSC1Q2TAM9 212 aa11.45□□□□□ -0.58
USP48-209ENST00000487880 RIC3Q7Z5B4 369 aa11.45□□□□□ -0.58
USP48-209ENST00000487880 POLR3EQ9NVU0 708 aa11.45□□□□□ -0.58
USP48-209ENST00000487880 LIMD1Q9UGP4 676 aa11.45□□□□□ -0.58
USP48-209ENST00000487880 PCMTD1Q96MG8 357 aaPredicted RBP11.44□□□□□ -0.58
USP48-209ENST00000487880 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.44□□□□□ -0.58
USP48-209ENST00000487880 NDUFV2P19404 249 aa11.43□□□□□ -0.58
USP48-209ENST00000487880 ATP6V1AP38606 617 aa11.43□□□□□ -0.58
USP48-209ENST00000487880 PROCA1Q8NCQ7 364 aaPredicted RBP11.43□□□□□ -0.58
USP48-209ENST00000487880 NYAP1Q6ZVC0 841 aa11.42□□□□□ -0.58
USP48-209ENST00000487880 HLA-CQ95604 372 aa11.42□□□□□ -0.58
USP48-209ENST00000487880 GRIPAP1Q4V328 841 aa11.41□□□□□ -0.58
USP48-209ENST00000487880 MORN1Q5T089 497 aa11.4□□□□□ -0.58
USP48-209ENST00000487880 PCDHGC3Q9UN70 934 aa11.4□□□□□ -0.58
USP48-209ENST00000487880 FDX1P10109 184 aa11.39□□□□□ -0.59
USP48-209ENST00000487880 GUCA2AQ02747 115 aa11.39□□□□□ -0.59
USP48-209ENST00000487880 GTF3C3Q9Y5Q9 886 aa11.39□□□□□ -0.59
USP48-209ENST00000487880 PCDHB15Q9Y5E8 787 aa11.38□□□□□ -0.59
USP48-209ENST00000487880 PTPN5P54829 565 aa11.36□□□□□ -0.59
USP48-209ENST00000487880 PUS10Q3MIT2 529 aaKnown RBP11.36□□□□□ -0.59
USP48-209ENST00000487880 PRPF38BQ5VTL8 546 aaKnown RBP11.36□□□□□ -0.59
USP48-209ENST00000487880 FBXO31Q5XUX0 539 aaPredicted RBP11.36□□□□□ -0.59
USP48-209ENST00000487880 PPP2R2DQ66LE6 453 aa11.36□□□□□ -0.59
USP48-209ENST00000487880 PCDHB3Q9Y5E6 796 aa11.36□□□□□ -0.59
USP48-209ENST00000487880 LILRB3O75022 631 aa11.35□□□□□ -0.59
USP48-209ENST00000487880 QPCTQ16769 361 aa11.35□□□□□ -0.59
USP48-209ENST00000487880 SLC27A5Q9Y2P5 690 aa11.35□□□□□ -0.59
USP48-209ENST00000487880 BLOC1S3Q6QNY0 202 aa11.33□□□□□ -0.6
USP48-209ENST00000487880 HRCP23327 699 aa11.32□□□□□ -0.6
USP48-209ENST00000487880 CSPP1Q1MSJ5 1256 aa11.32□□□□□ -0.6
USP48-209ENST00000487880 CABLES1Q8TDN4 633 aa11.32□□□□□ -0.6
USP48-209ENST00000487880 ZBTB3Q9H5J0 574 aa11.32□□□□□ -0.6
USP48-209ENST00000487880 SALL2Q9Y467 1007 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms