RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 KCNA6P17658 529 aa37.42■■■■□ 3.58
LIME1-206ENST00000487026 MYO5BQ9ULV0 1848 aa37.42■■■■□ 3.58
LIME1-206ENST00000487026 ZFYVE9O95405 1425 aa37.39■■■■□ 3.58
LIME1-206ENST00000487026 RIMS2Q9UQ26 1411 aa37.39■■■■□ 3.58
LIME1-206ENST00000487026 TMEM131LA2VDJ0 1609 aa37.39■■■■□ 3.58
LIME1-206ENST00000487026 XIRP1Q702N8 1843 aaKnown RBP37.38■■■■□ 3.57
LIME1-206ENST00000487026 PPP1R15AO75807 674 aaPredicted RBP37.37■■■■□ 3.57
LIME1-206ENST00000487026 RBM33Q96EV2 1170 aaKnown RBP37.37■■■■□ 3.57
LIME1-206ENST00000487026 HDGFP51858 240 aaKnown RBP37.35■■■■□ 3.57
LIME1-206ENST00000487026 NUTM2DQ5VT03 806 aaPredicted RBP37.35■■■■□ 3.57
LIME1-206ENST00000487026 PROSER2Q86WR7 435 aaPredicted RBP37.35■■■■□ 3.57
LIME1-206ENST00000487026 TMEM94Q12767 1356 aa37.34■■■■□ 3.57
LIME1-206ENST00000487026 RRBP1Q9P2E9 1410 aaKnown RBP37.33■■■■□ 3.57
LIME1-206ENST00000487026 PLEKHG1Q9ULL1 1385 aa37.31■■■■□ 3.56
LIME1-206ENST00000487026 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.27■■■■□ 3.56
LIME1-206ENST00000487026 SOCS7O14512 581 aa37.22■■■■□ 3.55
LIME1-206ENST00000487026 MED1Q15648 1581 aaPredicted RBP37.21■■■■□ 3.55
LIME1-206ENST00000487026 TBX22Q9Y458 520 aa37.21■■■■□ 3.55
LIME1-206ENST00000487026 NWD1Q149M9 1564 aa37.21■■■■□ 3.55
LIME1-206ENST00000487026 NAIPQ13075 1403 aa37.19■■■■□ 3.54
LIME1-206ENST00000487026 NKTRP30414 1462 aaKnown RBP37.19■■■■□ 3.54
LIME1-206ENST00000487026 CHD2O14647 1828 aaKnown RBP37.15■■■■□ 3.54
LIME1-206ENST00000487026 ADAMTS13Q76LX8 1427 aa37.14■■■■□ 3.54
LIME1-206ENST00000487026 FAM135BQ49AJ0 1406 aa37.12■■■■□ 3.53
LIME1-206ENST00000487026 SPHKAPQ2M3C7 1700 aa37.11■■■■□ 3.53
LIME1-206ENST00000487026 MSH6P52701 1360 aa37.09■■■■□ 3.53
LIME1-206ENST00000487026 ZNF326Q5BKZ1 582 aaKnown RBP37.09■■■■□ 3.53
LIME1-206ENST00000487026 TRIM52Q96A61 297 aa37.09■■■■□ 3.53
LIME1-206ENST00000487026 PHF23Q9BUL5 403 aaPredicted RBP37.04■■■■□ 3.52
LIME1-206ENST00000487026 SLAIN2Q9P270 581 aa37.03■■■■□ 3.52
LIME1-206ENST00000487026 HFM1A2PYH4 1435 aa37.02■■■■□ 3.52
LIME1-206ENST00000487026 ROBO1Q9Y6N7 1651 aa37.02■■■■□ 3.52
LIME1-206ENST00000487026 DIP2AQ14689 1571 aa37.01■■■■□ 3.52
LIME1-206ENST00000487026 C14orf37Q86TY3 774 aa37.01■■■■□ 3.52
LIME1-206ENST00000487026 AMOTL2Q9Y2J4 779 aa37■■■■□ 3.51
LIME1-206ENST00000487026 PIK3R4Q99570 1358 aa36.99■■■■□ 3.51
LIME1-206ENST00000487026 CLTCL1P53675 1640 aa36.99■■■■□ 3.51
LIME1-206ENST00000487026 PTPRUQ92729 1446 aa36.97■■■■□ 3.51
LIME1-206ENST00000487026 TRPM2O94759 1503 aa36.95■■■■□ 3.51
LIME1-206ENST00000487026 SLC4A1APQ9BWU0 796 aaKnown RBP36.94■■■■□ 3.5
LIME1-206ENST00000487026 NCOA3Q9Y6Q9 1424 aa36.93■■■■□ 3.5
LIME1-206ENST00000487026 NRXN3Q9Y4C0 1643 aa36.92■■■■□ 3.5
LIME1-206ENST00000487026 C19orf44Q9H6X5 657 aa36.89■■■■□ 3.5
LIME1-206ENST00000487026 SETBP1Q9Y6X0 1596 aa36.88■■■■□ 3.49
LIME1-206ENST00000487026 NEXMIFQ5QGS0 1516 aa36.86■■■■□ 3.49
LIME1-206ENST00000487026 ATF3P18847 181 aa36.86■■■■□ 3.49
LIME1-206ENST00000487026 METP08581 1390 aa36.86■■■■□ 3.49
LIME1-206ENST00000487026 KIF1BO60333 1816 aa36.85■■■■□ 3.49
LIME1-206ENST00000487026 FOXD1Q16676 465 aa36.84■■■■□ 3.49
LIME1-206ENST00000487026 SIPA1L2Q9P2F8 1722 aaPredicted RBP36.84■■■■□ 3.49
LIME1-206ENST00000487026 CADPS2Q86UW7 1296 aa36.83■■■■□ 3.49
LIME1-206ENST00000487026 RGS17Q9UGC6 210 aaPredicted RBP36.81■■■■□ 3.48
LIME1-206ENST00000487026 PHLPP1O60346 1717 aa36.79■■■■□ 3.48
LIME1-206ENST00000487026 XRN1Q8IZH2 1706 aaKnown RBP36.77■■■■□ 3.48
LIME1-206ENST00000487026 VGFO15240 615 aaPredicted RBP36.75■■■■□ 3.47
LIME1-206ENST00000487026 RPGRIP1LQ68CZ1 1315 aa36.7■■■■□ 3.47
LIME1-206ENST00000487026 JCADQ9P266 1359 aa36.69■■■■□ 3.46
LIME1-206ENST00000487026 MPHOSPH9Q99550 1183 aa36.69■■■■□ 3.46
LIME1-206ENST00000487026 BRINP3Q76B58 766 aa36.67■■■■□ 3.46
LIME1-206ENST00000487026 COL16A1Q07092 1604 aaPredicted RBP36.67■■■■□ 3.46
LIME1-206ENST00000487026 DCCP43146 1447 aa36.63■■■■□ 3.45
LIME1-206ENST00000487026 RGL3Q3MIN7 710 aa36.61■■■■□ 3.45
LIME1-206ENST00000487026 POTEAQ6S8J7 498 aa36.61■■■■□ 3.45
LIME1-206ENST00000487026 MST1RQ04912 1400 aa36.59■■■■□ 3.45
LIME1-206ENST00000487026 AHDC1Q5TGY3 1603 aaPredicted RBP36.59■■■■□ 3.45
LIME1-206ENST00000487026 CCDC144AA2RUR9 1427 aa36.59■■■■□ 3.45
LIME1-206ENST00000487026 ADGRL3Q9HAR2 1447 aa36.59■■■■□ 3.45
LIME1-206ENST00000487026 PPLO60437 1756 aa36.58■■■■□ 3.45
LIME1-206ENST00000487026 SETD1AO15047 1707 aaKnown RBP36.56■■■■□ 3.44
LIME1-206ENST00000487026 ROBO2Q9HCK4 1378 aa36.55■■■■□ 3.44
LIME1-206ENST00000487026 ADGRF5Q8IZF2 1346 aa36.54■■■■□ 3.44
LIME1-206ENST00000487026 NALCNQ8IZF0 1738 aa36.53■■■■□ 3.44
LIME1-206ENST00000487026 ASXL1Q8IXJ9 1541 aa36.53■■■■□ 3.44
LIME1-206ENST00000487026 SETD5Q9C0A6 1442 aa36.52■■■■□ 3.44
LIME1-206ENST00000487026 SPATA31A6Q5VVP1 1343 aa36.51■■■■□ 3.43
LIME1-206ENST00000487026 SPATA31E1Q6ZUB1 1445 aa36.51■■■■□ 3.43
LIME1-206ENST00000487026 DDX17Q92841 729 aaKnown RBP36.5■■■■□ 3.43
LIME1-206ENST00000487026 PTCH1Q13635 1447 aa36.5■■■■□ 3.43
LIME1-206ENST00000487026 LRP6O75581 1613 aa36.49■■■■□ 3.43
LIME1-206ENST00000487026 MEX3CQ5U5Q3 659 aaKnown RBP36.47■■■■□ 3.43
LIME1-206ENST00000487026 SHPRHQ149N8 1683 aa36.43■■■■□ 3.42
LIME1-206ENST00000487026 NUTM2BA6NNL0 878 aaPredicted RBP36.43■■■■□ 3.42
LIME1-206ENST00000487026 NUTM2EB1AL46 878 aaPredicted RBP36.43■■■■□ 3.42
LIME1-206ENST00000487026 NUTM2AQ8IVF1 878 aaPredicted RBP36.43■■■■□ 3.42
LIME1-206ENST00000487026 C1orf167Q5SNV9 1468 aa36.42■■■■□ 3.42
LIME1-206ENST00000487026 STK26Q9P289 416 aa36.41■■■■□ 3.42
LIME1-206ENST00000487026 ANKRD30BQ9BXX2 1392 aa36.4■■■■□ 3.42
LIME1-206ENST00000487026 ACIN1Q9UKV3 1341 aaKnown RBP36.4■■■■□ 3.42
LIME1-206ENST00000487026 NHSL1Q5SYE7 1610 aa36.4■■■■□ 3.42
LIME1-206ENST00000487026 PRAG1Q86YV5 1406 aa36.4■■■■□ 3.42
LIME1-206ENST00000487026 RAB3GAP2Q9H2M9 1393 aa36.4■■■■□ 3.42
LIME1-206ENST00000487026 LRRC59Q96AG4 307 aaKnown RBP36.39■■■■□ 3.42
LIME1-206ENST00000487026 ORAI2Q96SN7 254 aa36.39■■■■□ 3.42
LIME1-206ENST00000487026 TMEM132EQ6IEE7 984 aa36.38■■■■□ 3.41
LIME1-206ENST00000487026 IFT172Q9UG01 1749 aa36.36■■■■□ 3.41
LIME1-206ENST00000487026 WAPLQ7Z5K2 1190 aa36.34■■■■□ 3.41
LIME1-206ENST00000487026 PIK3C2GO75747 1445 aa36.3■■■■□ 3.4
LIME1-206ENST00000487026 LRPPRCP42704 1394 aaKnown RBP36.29■■■■□ 3.4
LIME1-206ENST00000487026 ZNF772Q68DY9 489 aaPredicted RBP36.29■■■■□ 3.4
LIME1-206ENST00000487026 PNPLA6Q8IY17 1366 aa36.27■■■■□ 3.4
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms