RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MINK1Q8N4C8 1332 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-210ENST00000487017 FYCO1Q9BQS8 1478 aa20.19■□□□□ 0.82
COL7A1-210ENST00000487017 CASKIN1Q8WXD9 1431 aa20.19■□□□□ 0.82
COL7A1-210ENST00000487017 RRBP1Q9P2E9 1410 aaKnown RBP20.19■□□□□ 0.82
COL7A1-210ENST00000487017 RASSF8Q8NHQ8 419 aa20.19■□□□□ 0.82
COL7A1-210ENST00000487017 NCOA2Q15596 1464 aa20.18■□□□□ 0.82
COL7A1-210ENST00000487017 ZNF644Q9H582 1327 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-210ENST00000487017 FOXD4L6Q3SYB3 417 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-210ENST00000487017 FOXD4L3Q6VB84 417 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-210ENST00000487017 ROCK1Q13464 1354 aa20.17■□□□□ 0.82
COL7A1-210ENST00000487017 A0A0U1RQG5 324 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-210ENST00000487017 FAM184AQ8NB25 1140 aa20.17■□□□□ 0.82
COL7A1-210ENST00000487017 CHMP4CQ96CF2 233 aa20.17■□□□□ 0.82
COL7A1-210ENST00000487017 STAC3Q96MF2 364 aa20.17■□□□□ 0.82
COL7A1-210ENST00000487017 DIAPH3Q9NSV4 1193 aa20.17■□□□□ 0.82
COL7A1-210ENST00000487017 CCDC9Q9Y3X0 531 aaKnown RBP20.16■□□□□ 0.82
COL7A1-210ENST00000487017 GOLGA6L1Q8N7Z2 621 aa20.16■□□□□ 0.82
COL7A1-210ENST00000487017 ANO8Q9HCE9 1232 aaPredicted RBP20.15■□□□□ 0.82
COL7A1-210ENST00000487017 GOLGA6L19H0YKK7 550 aa20.15■□□□□ 0.82
COL7A1-210ENST00000487017 TNNT3P45378 269 aaPredicted RBP20.15■□□□□ 0.82
COL7A1-210ENST00000487017 RAD54L2Q9Y4B4 1467 aa20.15■□□□□ 0.82
COL7A1-210ENST00000487017 RUFY2Q8WXA3 655 aa20.15■□□□□ 0.82
COL7A1-210ENST00000487017 NFKBIBQ15653 356 aa20.14■□□□□ 0.82
COL7A1-210ENST00000487017 ANKRD50Q9ULJ7 1429 aa20.14■□□□□ 0.82
COL7A1-210ENST00000487017 ERICH3Q5RHP9 1530 aa20.14■□□□□ 0.81
COL7A1-210ENST00000487017 C22orf23Q9BZE7 217 aa20.14■□□□□ 0.81
COL7A1-210ENST00000487017 TMX4Q9H1E5 349 aaPredicted RBP20.14■□□□□ 0.81
COL7A1-210ENST00000487017 TOMM22Q9NS69 142 aa20.13■□□□□ 0.81
COL7A1-210ENST00000487017 BECN2A8MW95 431 aa20.12■□□□□ 0.81
COL7A1-210ENST00000487017 PANK1Q8TE04 598 aa20.12■□□□□ 0.81
COL7A1-210ENST00000487017 TPM3P06753 285 aa20.11■□□□□ 0.81
COL7A1-210ENST00000487017 C1orf141Q5JVX7 400 aa20.11■□□□□ 0.81
COL7A1-210ENST00000487017 INTS3Q68E01 1043 aaKnown RBP20.11■□□□□ 0.81
COL7A1-210ENST00000487017 VSIG10Q8N0Z9 540 aa20.11■□□□□ 0.81
COL7A1-210ENST00000487017 ZKSCAN1P17029 563 aaPredicted RBP20.11■□□□□ 0.81
COL7A1-210ENST00000487017 NUCB2P80303 420 aa20.11■□□□□ 0.81
COL7A1-210ENST00000487017 ADAMTS8Q9UP79 889 aa20.1■□□□□ 0.81
COL7A1-210ENST00000487017 ARAP1Q96P48 1450 aa20.1■□□□□ 0.81
COL7A1-210ENST00000487017 TEFQ10587 303 aa20.1■□□□□ 0.81
COL7A1-210ENST00000487017 GNAI1P63096 354 aa20.1■□□□□ 0.81
COL7A1-210ENST00000487017 LNPKQ9C0E8 428 aa20.1■□□□□ 0.81
COL7A1-210ENST00000487017 ANO2Q9NQ90 1003 aa20.07■□□□□ 0.8
COL7A1-210ENST00000487017 C9orf78Q9NZ63 289 aaPredicted RBP20.07■□□□□ 0.8
COL7A1-210ENST00000487017 G3V3G9 751 aa20.07■□□□□ 0.8
COL7A1-210ENST00000487017 DCAF8Q5TAQ9 597 aa20.07■□□□□ 0.8
COL7A1-210ENST00000487017 VPS53Q5VIR6 699 aa20.07■□□□□ 0.8
COL7A1-210ENST00000487017 PRDM2Q13029 1718 aa20.07■□□□□ 0.8
COL7A1-210ENST00000487017 EIF2S2P20042 333 aaKnown RBP20.06■□□□□ 0.8
COL7A1-210ENST00000487017 CDCA7LQ96GN5 454 aa20.06■□□□□ 0.8
COL7A1-210ENST00000487017 NEXNQ0ZGT2 675 aa20.06■□□□□ 0.8
COL7A1-210ENST00000487017 MCTP1Q6DN14 999 aa20.06■□□□□ 0.8
COL7A1-210ENST00000487017 IFIT2P09913 472 aaKnown RBP20.05■□□□□ 0.8
COL7A1-210ENST00000487017 FRAT2O75474 233 aaPredicted RBP20.04■□□□□ 0.8
COL7A1-210ENST00000487017 LRRFIP1Q32MZ4 808 aaKnown RBP20.04■□□□□ 0.8
COL7A1-210ENST00000487017 FKBP5Q13451 457 aaPredicted RBP20.04■□□□□ 0.8
COL7A1-210ENST00000487017 PES1O00541 588 aaKnown RBP20.03■□□□□ 0.8
COL7A1-210ENST00000487017 TPD52L1Q16890 204 aaPredicted RBP20.03■□□□□ 0.8
COL7A1-210ENST00000487017 CDC45O75419 566 aa20.03■□□□□ 0.8
COL7A1-210ENST00000487017 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.03■□□□□ 0.8
COL7A1-210ENST00000487017 MARCH6O60337 910 aa20.03■□□□□ 0.8
COL7A1-210ENST00000487017 NECTIN2Q92692 538 aa20.02■□□□□ 0.8
COL7A1-210ENST00000487017 PPP2R1AP30153 589 aa20.02■□□□□ 0.8
COL7A1-210ENST00000487017 RNF20Q5VTR2 975 aa20.02■□□□□ 0.8
COL7A1-210ENST00000487017 FAM43AQ8N2R8 423 aa20.01■□□□□ 0.79
COL7A1-210ENST00000487017 MRE11P49959 708 aa20.01■□□□□ 0.79
COL7A1-210ENST00000487017 SMC3Q9UQE7 1217 aa20.01■□□□□ 0.79
COL7A1-210ENST00000487017 CPLX2Q6PUV4 134 aaKnown RBP20■□□□□ 0.79
COL7A1-210ENST00000487017 CEP89Q96ST8 783 aa20■□□□□ 0.79
COL7A1-210ENST00000487017 HMOX1P09601 288 aa20■□□□□ 0.79
COL7A1-210ENST00000487017 AKAP17AQ02040 695 aaKnown RBP20■□□□□ 0.79
COL7A1-210ENST00000487017 GGNBP2Q9H3C7 697 aa20■□□□□ 0.79
COL7A1-210ENST00000487017 SYNE3Q6ZMZ3 975 aa19.99■□□□□ 0.79
COL7A1-210ENST00000487017 SYNJ1O43426 1573 aa19.99■□□□□ 0.79
COL7A1-210ENST00000487017 TSR1Q2NL82 804 aaKnown RBP19.99■□□□□ 0.79
COL7A1-210ENST00000487017 BICD2Q8TD16 824 aa19.99■□□□□ 0.79
COL7A1-210ENST00000487017 AKNAQ7Z591 1439 aa19.99■□□□□ 0.79
COL7A1-210ENST00000487017 ZNF592Q92610 1267 aa19.99■□□□□ 0.79
COL7A1-210ENST00000487017 TSPYL4Q9UJ04 414 aa19.99■□□□□ 0.79
COL7A1-210ENST00000487017 CFTRP13569 1480 aa19.99■□□□□ 0.79
COL7A1-210ENST00000487017 TTC5Q8N0Z6 440 aa19.99■□□□□ 0.79
COL7A1-210ENST00000487017 GTF2E1P29083 439 aaPredicted RBP19.98■□□□□ 0.79
COL7A1-210ENST00000487017 HSP90AB4PQ58FF6 505 aa19.98■□□□□ 0.79
COL7A1-210ENST00000487017 TCP11L2Q8N4U5 519 aa19.98■□□□□ 0.79
COL7A1-210ENST00000487017 TPM1P09493 284 aa19.98■□□□□ 0.79
COL7A1-210ENST00000487017 DDX58O95786 925 aaKnown RBP19.98■□□□□ 0.79
COL7A1-210ENST00000487017 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.98■□□□□ 0.79
COL7A1-210ENST00000487017 VPS37CA5D8V6 355 aaPredicted RBP19.98■□□□□ 0.79
COL7A1-210ENST00000487017 G3BP1Q13283 466 aaKnown RBP eCLIP19.98■□□□□ 0.79
COL7A1-210ENST00000487017 MTHFSP49914 203 aa19.97■□□□□ 0.79
COL7A1-210ENST00000487017 WWC1Q8IX03 1113 aa19.97■□□□□ 0.79
COL7A1-210ENST00000487017 CCAR2Q8N163 923 aaKnown RBP19.97■□□□□ 0.79
COL7A1-210ENST00000487017 FAM13BQ9NYF5 915 aa19.96■□□□□ 0.79
COL7A1-210ENST00000487017 ERC2O15083 957 aa19.96■□□□□ 0.79
COL7A1-210ENST00000487017 TRIM29Q14134 588 aa19.96■□□□□ 0.79
COL7A1-210ENST00000487017 PDE3AQ14432 1141 aa19.96■□□□□ 0.79
COL7A1-210ENST00000487017 CABP2Q9NPB3 220 aa19.96■□□□□ 0.79
COL7A1-210ENST00000487017 SMG6Q86US8 1419 aaKnown RBP19.95■□□□□ 0.78
COL7A1-210ENST00000487017 PDZRN3Q9UPQ7 1066 aa19.95■□□□□ 0.78
COL7A1-210ENST00000487017 EHBP1L1Q8N3D4 1523 aa19.95■□□□□ 0.78
COL7A1-210ENST00000487017 CPLX1O14810 134 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms