RNA–Protein interactions for RNA: ENST00000486665.5

HDAC6-229, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-229ENST00000486665 E9PCH4 1651 aa18.74■□□□□ 0.59
HDAC6-229ENST00000486665 SCAF11Q99590 1463 aaKnown RBP18.74■□□□□ 0.59
HDAC6-229ENST00000486665 CCER1Q8TC90 406 aaPredicted RBP18.74■□□□□ 0.59
HDAC6-229ENST00000486665 SLIT1O75093 1534 aa18.74■□□□□ 0.59
HDAC6-229ENST00000486665 SENP3Q9H4L4 574 aaPredicted RBP18.73■□□□□ 0.59
HDAC6-229ENST00000486665 ANKRD30BQ9BXX2 1392 aa18.71■□□□□ 0.59
HDAC6-229ENST00000486665 RPRD2Q5VT52 1461 aaKnown RBP18.7■□□□□ 0.58
HDAC6-229ENST00000486665 TXNDC2Q86VQ3 553 aa18.69■□□□□ 0.58
HDAC6-229ENST00000486665 NOS1P29475 1434 aa18.68■□□□□ 0.58
HDAC6-229ENST00000486665 SIN3AQ96ST3 1273 aa18.68■□□□□ 0.58
HDAC6-229ENST00000486665 TMEM2Q9UHN6 1383 aa18.65■□□□□ 0.58
HDAC6-229ENST00000486665 KDM5AP29375 1690 aaKnown RBP18.63■□□□□ 0.57
HDAC6-229ENST00000486665 IDI1Q13907 227 aa18.63■□□□□ 0.57
HDAC6-229ENST00000486665 NEUROD1Q13562 356 aa18.62■□□□□ 0.57
HDAC6-229ENST00000486665 CLSPNQ9HAW4 1339 aa18.62■□□□□ 0.57
HDAC6-229ENST00000486665 SPHKAPQ2M3C7 1700 aa18.61■□□□□ 0.57
HDAC6-229ENST00000486665 TRPM2O94759 1503 aa18.61■□□□□ 0.57
HDAC6-229ENST00000486665 SLC52A1Q9NWF4 448 aa18.6■□□□□ 0.57
HDAC6-229ENST00000486665 MYO5BQ9ULV0 1848 aa18.59■□□□□ 0.57
HDAC6-229ENST00000486665 EID1Q9Y6B2 187 aa18.59■□□□□ 0.57
HDAC6-229ENST00000486665 ADGRB3O60242 1522 aa18.59■□□□□ 0.57
HDAC6-229ENST00000486665 CCDC144AA2RUR9 1427 aa18.58■□□□□ 0.57
HDAC6-229ENST00000486665 CLTCL1P53675 1640 aa18.57■□□□□ 0.56
HDAC6-229ENST00000486665 RBM33Q96EV2 1170 aaKnown RBP18.57■□□□□ 0.56
HDAC6-229ENST00000486665 SLC26A8Q96RN1 970 aa18.57■□□□□ 0.56
HDAC6-229ENST00000486665 PHF23Q9BUL5 403 aaPredicted RBP18.57■□□□□ 0.56
HDAC6-229ENST00000486665 STAG3Q9UJ98 1225 aa18.57■□□□□ 0.56
HDAC6-229ENST00000486665 TMEM94Q12767 1356 aa18.56■□□□□ 0.56
HDAC6-229ENST00000486665 CHGAP10645 457 aaKnown RBP18.55■□□□□ 0.56
HDAC6-229ENST00000486665 RGS17Q9UGC6 210 aaPredicted RBP18.55■□□□□ 0.56
HDAC6-229ENST00000486665 NWD1Q149M9 1564 aa18.54■□□□□ 0.56
HDAC6-229ENST00000486665 ROBO1Q9Y6N7 1651 aa18.53■□□□□ 0.56
HDAC6-229ENST00000486665 KCNA6P17658 529 aa18.52■□□□□ 0.56
HDAC6-229ENST00000486665 RGL3Q3MIN7 710 aa18.52■□□□□ 0.56
HDAC6-229ENST00000486665 FAM135BQ49AJ0 1406 aa18.51■□□□□ 0.55
HDAC6-229ENST00000486665 SPATA31E1Q6ZUB1 1445 aa18.51■□□□□ 0.55
HDAC6-229ENST00000486665 ZFYVE9O95405 1425 aa18.5■□□□□ 0.55
HDAC6-229ENST00000486665 TMEM131LA2VDJ0 1609 aa18.49■□□□□ 0.55
HDAC6-229ENST00000486665 PROSER2Q86WR7 435 aaPredicted RBP18.48■□□□□ 0.55
HDAC6-229ENST00000486665 L3MBTL2Q969R5 705 aa18.48■□□□□ 0.55
HDAC6-229ENST00000486665 CHD2O14647 1828 aaKnown RBP18.48■□□□□ 0.55
HDAC6-229ENST00000486665 NKTRP30414 1462 aaKnown RBP18.47■□□□□ 0.55
HDAC6-229ENST00000486665 ZNF326Q5BKZ1 582 aaKnown RBP18.46■□□□□ 0.55
HDAC6-229ENST00000486665 RIMS2Q9UQ26 1411 aa18.45■□□□□ 0.54
HDAC6-229ENST00000486665 KIF1BO60333 1816 aa18.44■□□□□ 0.54
HDAC6-229ENST00000486665 TONSLQ96HA7 1378 aa18.44■□□□□ 0.54
HDAC6-229ENST00000486665 PLEKHG1Q9ULL1 1385 aa18.43■□□□□ 0.54
HDAC6-229ENST00000486665 BCANQ96GW7 911 aa18.43■□□□□ 0.54
HDAC6-229ENST00000486665 NUTM2DQ5VT03 806 aaPredicted RBP18.42■□□□□ 0.54
HDAC6-229ENST00000486665 DCAF11Q8TEB1 546 aa18.42■□□□□ 0.54
HDAC6-229ENST00000486665 TIMELESSQ9UNS1 1208 aa18.42■□□□□ 0.54
HDAC6-229ENST00000486665 KDM2AQ9Y2K7 1162 aa18.42■□□□□ 0.54
HDAC6-229ENST00000486665 PHLPP1O60346 1717 aa18.41■□□□□ 0.54
HDAC6-229ENST00000486665 POTEAQ6S8J7 498 aa18.41■□□□□ 0.54
HDAC6-229ENST00000486665 RPGRIP1LQ68CZ1 1315 aa18.41■□□□□ 0.54
HDAC6-229ENST00000486665 MSH6P52701 1360 aa18.39■□□□□ 0.53
HDAC6-229ENST00000486665 ADAMTS13Q76LX8 1427 aa18.39■□□□□ 0.53
HDAC6-229ENST00000486665 PPP1R15AO75807 674 aaPredicted RBP18.38■□□□□ 0.53
HDAC6-229ENST00000486665 SLAIN2Q9P270 581 aa18.37■□□□□ 0.53
HDAC6-229ENST00000486665 NEXMIFQ5QGS0 1516 aa18.37■□□□□ 0.53
HDAC6-229ENST00000486665 COL16A1Q07092 1604 aaPredicted RBP18.37■□□□□ 0.53
HDAC6-229ENST00000486665 ADGRF5Q8IZF2 1346 aa18.36■□□□□ 0.53
HDAC6-229ENST00000486665 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.35■□□□□ 0.53
HDAC6-229ENST00000486665 SETD1AO15047 1707 aaKnown RBP18.35■□□□□ 0.53
HDAC6-229ENST00000486665 VGFO15240 615 aaPredicted RBP18.34■□□□□ 0.53
HDAC6-229ENST00000486665 NBPF8Q3BBV2 869 aa18.34■□□□□ 0.53
HDAC6-229ENST00000486665 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.34■□□□□ 0.53
HDAC6-229ENST00000486665 TBX22Q9Y458 520 aa18.34■□□□□ 0.53
HDAC6-229ENST00000486665 ZEB1P37275 1124 aaPredicted RBP18.33■□□□□ 0.52
HDAC6-229ENST00000486665 HDGFP51858 240 aaKnown RBP18.33■□□□□ 0.52
HDAC6-229ENST00000486665 STAC3Q96MF2 364 aa18.33■□□□□ 0.52
HDAC6-229ENST00000486665 PTPRUQ92729 1446 aa18.32■□□□□ 0.52
HDAC6-229ENST00000486665 NRXN3Q9Y4C0 1643 aa18.32■□□□□ 0.52
HDAC6-229ENST00000486665 DIP2AQ14689 1571 aa18.32■□□□□ 0.52
HDAC6-229ENST00000486665 PPLO60437 1756 aa18.32■□□□□ 0.52
HDAC6-229ENST00000486665 IFT172Q9UG01 1749 aa18.32■□□□□ 0.52
HDAC6-229ENST00000486665 LRP6O75581 1613 aa18.31■□□□□ 0.52
HDAC6-229ENST00000486665 MYOM2P54296 1465 aa18.3■□□□□ 0.52
HDAC6-229ENST00000486665 JCADQ9P266 1359 aa18.3■□□□□ 0.52
HDAC6-229ENST00000486665 PRAG1Q86YV5 1406 aa18.29■□□□□ 0.52
HDAC6-229ENST00000486665 NRXN1Q9ULB1 1477 aa18.28■□□□□ 0.52
HDAC6-229ENST00000486665 NCOA3Q9Y6Q9 1424 aa18.28■□□□□ 0.52
HDAC6-229ENST00000486665 AHDC1Q5TGY3 1603 aaPredicted RBP18.27■□□□□ 0.52
HDAC6-229ENST00000486665 XRN1Q8IZH2 1706 aaKnown RBP18.26■□□□□ 0.51
HDAC6-229ENST00000486665 CFAP70Q5T0N1 1121 aa18.26■□□□□ 0.51
HDAC6-229ENST00000486665 C14orf37Q86TY3 774 aa18.26■□□□□ 0.51
HDAC6-229ENST00000486665 PIK3R4Q99570 1358 aa18.26■□□□□ 0.51
HDAC6-229ENST00000486665 PIK3C2GO75747 1445 aa18.25■□□□□ 0.51
HDAC6-229ENST00000486665 C14orf93Q9H972 538 aaKnown RBP18.25■□□□□ 0.51
HDAC6-229ENST00000486665 AMOTL2Q9Y2J4 779 aa18.25■□□□□ 0.51
HDAC6-229ENST00000486665 SHPRHQ149N8 1683 aa18.25■□□□□ 0.51
HDAC6-229ENST00000486665 NBPF1Q3BBV0 1214 aa18.24■□□□□ 0.51
HDAC6-229ENST00000486665 SETBP1Q9Y6X0 1596 aa18.23■□□□□ 0.51
HDAC6-229ENST00000486665 C19orf44Q9H6X5 657 aa18.23■□□□□ 0.51
HDAC6-229ENST00000486665 BRINP3Q76B58 766 aa18.21■□□□□ 0.51
HDAC6-229ENST00000486665 CADPS2Q86UW7 1296 aa18.21■□□□□ 0.51
HDAC6-229ENST00000486665 METP08581 1390 aa18.2■□□□□ 0.5
HDAC6-229ENST00000486665 ATF3P18847 181 aa18.2■□□□□ 0.5
HDAC6-229ENST00000486665 TMEM132EQ6IEE7 984 aa18.2■□□□□ 0.5
HDAC6-229ENST00000486665 ASXL1Q8IXJ9 1541 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms