RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 MCTP1Q6DN14 999 aa12.97□□□□□ -0.33
SRGAP3-207ENST00000485983 CCDC144AA2RUR9 1427 aa12.97□□□□□ -0.33
SRGAP3-207ENST00000485983 ZKSCAN1P17029 563 aaPredicted RBP12.97□□□□□ -0.33
SRGAP3-207ENST00000485983 ERICH2A1L162 156 aa12.96□□□□□ -0.33
SRGAP3-207ENST00000485983 ANKRD45Q5TZF3 282 aa12.96□□□□□ -0.33
SRGAP3-207ENST00000485983 R3HCC1Q9Y3T6 440 aaKnown RBP12.96□□□□□ -0.33
SRGAP3-207ENST00000485983 GOLGA6L19H0YKK7 550 aa12.96□□□□□ -0.33
SRGAP3-207ENST00000485983 BECN2A8MW95 431 aa12.96□□□□□ -0.33
SRGAP3-207ENST00000485983 GOLGA6L3A6NEY3 463 aa12.96□□□□□ -0.34
SRGAP3-207ENST00000485983 SAMD1Q6SPF0 538 aaPredicted RBP12.96□□□□□ -0.34
SRGAP3-207ENST00000485983 ANKRD20A12PQ8NF67 263 aa12.96□□□□□ -0.34
SRGAP3-207ENST00000485983 G3BP1Q13283 466 aaKnown RBP eCLIP12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 SMARCA2P51531 1590 aa12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 IPO7O95373 1038 aaKnown RBP12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 PCMTD1Q96MG8 357 aaPredicted RBP12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 RAB3GAP2Q9H2M9 1393 aa12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 SF3B2Q13435 895 aaKnown RBP12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 FOXD4L5Q5VV16 416 aaPredicted RBP12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 ZKSCAN2Q63HK3 967 aa12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 CCDC70Q6NSX1 233 aa12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 FOXD4L4Q8WXT5 416 aaPredicted RBP12.95□□□□□ -0.34
SRGAP3-207ENST00000485983 PTPRGP23470 1445 aa12.94□□□□□ -0.34
SRGAP3-207ENST00000485983 FAM69CQ0P6D2 419 aa12.94□□□□□ -0.34
SRGAP3-207ENST00000485983 PANK3Q9H999 370 aa12.94□□□□□ -0.34
SRGAP3-207ENST00000485983 DIAPH1O60610 1272 aaKnown RBP12.93□□□□□ -0.34
SRGAP3-207ENST00000485983 NFXL1Q6ZNB6 911 aa12.93□□□□□ -0.34
SRGAP3-207ENST00000485983 TNNT3P45378 269 aaPredicted RBP12.93□□□□□ -0.34
SRGAP3-207ENST00000485983 RNF20Q5VTR2 975 aa12.93□□□□□ -0.34
SRGAP3-207ENST00000485983 NLRP2Q9NX02 1062 aa12.93□□□□□ -0.34
SRGAP3-207ENST00000485983 KIF15Q9NS87 1388 aa12.92□□□□□ -0.34
SRGAP3-207ENST00000485983 HOOK1Q9UJC3 728 aaKnown RBP12.92□□□□□ -0.34
SRGAP3-207ENST00000485983 CCAR1Q8IX12 1150 aaKnown RBP12.92□□□□□ -0.34
SRGAP3-207ENST00000485983 PPP1R1BQ9UD71 204 aaPredicted RBP12.92□□□□□ -0.34
SRGAP3-207ENST00000485983 API5Q9BZZ5 524 aaKnown RBP12.91□□□□□ -0.34
SRGAP3-207ENST00000485983 E9PSI1 815 aa12.91□□□□□ -0.34
SRGAP3-207ENST00000485983 NECTIN2Q92692 538 aa12.91□□□□□ -0.34
SRGAP3-207ENST00000485983 ST20-MTHFSA0A0A6YYL1 179 aa12.91□□□□□ -0.34
SRGAP3-207ENST00000485983 FKBP5Q13451 457 aaPredicted RBP12.91□□□□□ -0.34
SRGAP3-207ENST00000485983 HSP90AB4PQ58FF6 505 aa12.9□□□□□ -0.34
SRGAP3-207ENST00000485983 MYBBP1AQ9BQG0 1328 aaKnown RBP12.9□□□□□ -0.34
SRGAP3-207ENST00000485983 ATAD2BQ9ULI0 1458 aa12.9□□□□□ -0.34
SRGAP3-207ENST00000485983 REC8O95072 547 aa12.9□□□□□ -0.34
SRGAP3-207ENST00000485983 BCL2L13Q9BXK5 485 aa12.9□□□□□ -0.34
SRGAP3-207ENST00000485983 CCAR2Q8N163 923 aaKnown RBP12.89□□□□□ -0.35
SRGAP3-207ENST00000485983 SAFBQ15424 915 aaKnown RBP eCLIP12.89□□□□□ -0.35
SRGAP3-207ENST00000485983 ANO2Q9NQ90 1003 aa12.89□□□□□ -0.35
SRGAP3-207ENST00000485983 RIC3Q7Z5B4 369 aa12.89□□□□□ -0.35
SRGAP3-207ENST00000485983 CCDC27Q2M243 656 aa12.88□□□□□ -0.35
SRGAP3-207ENST00000485983 FBXO3Q9UK99 471 aa12.88□□□□□ -0.35
SRGAP3-207ENST00000485983 DEKP35659 375 aaKnown RBP12.88□□□□□ -0.35
SRGAP3-207ENST00000485983 ARID3AQ99856 593 aa12.88□□□□□ -0.35
SRGAP3-207ENST00000485983 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.88□□□□□ -0.35
SRGAP3-207ENST00000485983 CADPSQ9ULU8 1353 aa12.88□□□□□ -0.35
SRGAP3-207ENST00000485983 DDX11L8A8MPP1 907 aa12.88□□□□□ -0.35
SRGAP3-207ENST00000485983 ROCK1Q13464 1354 aa12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 IKQ13123 557 aaPredicted RBP12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 FHOD3Q2V2M9 1422 aa12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 ODF2Q5BJF6 829 aa12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 CT47A1Q5JQC4 288 aaPredicted RBP12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 PIP4K2BP78356 416 aa12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 TSPYL4Q9UJ04 414 aa12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 RAPGEF2Q9Y4G8 1499 aa12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 WWC2Q6AWC2 1192 aa12.87□□□□□ -0.35
SRGAP3-207ENST00000485983 RIPK4P57078 832 aa12.86□□□□□ -0.35
SRGAP3-207ENST00000485983 RALYLQ86SE5 291 aaKnown RBP12.86□□□□□ -0.35
SRGAP3-207ENST00000485983 NEUROD6Q96NK8 337 aa12.86□□□□□ -0.35
SRGAP3-207ENST00000485983 RBM19Q9Y4C8 960 aaKnown RBP12.86□□□□□ -0.35
SRGAP3-207ENST00000485983 ERC2O15083 957 aa12.86□□□□□ -0.35
SRGAP3-207ENST00000485983 DDX19BQ9UMR2 479 aa12.86□□□□□ -0.35
SRGAP3-207ENST00000485983 FOXD4L6Q3SYB3 417 aaPredicted RBP12.85□□□□□ -0.35
SRGAP3-207ENST00000485983 FOXD4L3Q6VB84 417 aaPredicted RBP12.85□□□□□ -0.35
SRGAP3-207ENST00000485983 TOP2AP11388 1531 aaKnown RBP12.85□□□□□ -0.35
SRGAP3-207ENST00000485983 FYB1O15117 783 aa12.85□□□□□ -0.35
SRGAP3-207ENST00000485983 GPS2Q13227 327 aa12.85□□□□□ -0.35
SRGAP3-207ENST00000485983 WASHC4Q2M389 1173 aa12.85□□□□□ -0.35
SRGAP3-207ENST00000485983 DDX49Q9Y6V7 483 aaKnown RBP12.85□□□□□ -0.35
SRGAP3-207ENST00000485983 CENPQQ7L2Z9 268 aaPredicted RBP12.85□□□□□ -0.35
SRGAP3-207ENST00000485983 BRMS1Q9HCU9 246 aa12.84□□□□□ -0.35
SRGAP3-207ENST00000485983 AIMP1Q12904 312 aaKnown RBP12.84□□□□□ -0.35
SRGAP3-207ENST00000485983 SMARCA4P51532 1647 aa12.84□□□□□ -0.35
SRGAP3-207ENST00000485983 GPRASP1Q5JY77 1395 aa12.84□□□□□ -0.35
SRGAP3-207ENST00000485983 DHX57Q6P158 1386 aaKnown RBP12.84□□□□□ -0.35
SRGAP3-207ENST00000485983 XBP1P17861 261 aa12.83□□□□□ -0.36
SRGAP3-207ENST00000485983 NLRP6P59044 892 aa12.83□□□□□ -0.36
SRGAP3-207ENST00000485983 GNAI1P63096 354 aa12.83□□□□□ -0.36
SRGAP3-207ENST00000485983 PAF1Q8N7H5 531 aa12.83□□□□□ -0.36
SRGAP3-207ENST00000485983 BICD2Q8TD16 824 aa12.83□□□□□ -0.36
SRGAP3-207ENST00000485983 TMEM132AQ24JP5 1023 aa12.82□□□□□ -0.36
SRGAP3-207ENST00000485983 SKOR2Q2VWA4 1001 aaPredicted RBP12.82□□□□□ -0.36
SRGAP3-207ENST00000485983 PROSER2Q86WR7 435 aaPredicted RBP12.82□□□□□ -0.36
SRGAP3-207ENST00000485983 PLIN1O60240 522 aa12.82□□□□□ -0.36
SRGAP3-207ENST00000485983 TBC1D2BQ9UPU7 963 aa12.82□□□□□ -0.36
SRGAP3-207ENST00000485983 APAF1O14727 1248 aa12.82□□□□□ -0.36
SRGAP3-207ENST00000485983 SETQ01105 290 aaPredicted RBP12.81□□□□□ -0.36
SRGAP3-207ENST00000485983 COG6Q9Y2V7 657 aa12.81□□□□□ -0.36
SRGAP3-207ENST00000485983 KIF6Q6ZMV9 814 aa12.81□□□□□ -0.36
SRGAP3-207ENST00000485983 IPO9Q96P70 1041 aaKnown RBP12.81□□□□□ -0.36
SRGAP3-207ENST00000485983 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.8□□□□□ -0.36
SRGAP3-207ENST00000485983 NUTM2GQ5VZR2 741 aa12.8□□□□□ -0.36
SRGAP3-207ENST00000485983 DZIP1LQ8IYY4 767 aaKnown RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms