RNA–Protein interactions for RNA: ENST00000485465.1

CHMP3-207, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 920 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-207ENST00000485465 ZFYVE9O95405 1425 aa25.29■■□□□ 1.64
CHMP3-207ENST00000485465 ARHGAP23Q9P227 1491 aa25.29■■□□□ 1.64
CHMP3-207ENST00000485465 SLIT1O75093 1534 aa25.29■■□□□ 1.64
CHMP3-207ENST00000485465 STAC3Q96MF2 364 aa25.29■■□□□ 1.64
CHMP3-207ENST00000485465 KDM2AQ9Y2K7 1162 aa25.29■■□□□ 1.64
CHMP3-207ENST00000485465 LMTK3Q96Q04 1460 aa25.28■■□□□ 1.64
CHMP3-207ENST00000485465 HDGFP51858 240 aaKnown RBP25.28■■□□□ 1.64
CHMP3-207ENST00000485465 ZEB1P37275 1124 aaPredicted RBP25.27■■□□□ 1.64
CHMP3-207ENST00000485465 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.27■■□□□ 1.64
CHMP3-207ENST00000485465 IFT172Q9UG01 1749 aa25.26■■□□□ 1.63
CHMP3-207ENST00000485465 PPLO60437 1756 aa25.26■■□□□ 1.63
CHMP3-207ENST00000485465 VGFO15240 615 aaPredicted RBP25.26■■□□□ 1.63
CHMP3-207ENST00000485465 NUTM2DQ5VT03 806 aaPredicted RBP25.26■■□□□ 1.63
CHMP3-207ENST00000485465 MYOM2P54296 1465 aa25.24■■□□□ 1.63
CHMP3-207ENST00000485465 PPP1R15AO75807 674 aaPredicted RBP25.24■■□□□ 1.63
CHMP3-207ENST00000485465 TXNDC2Q86VQ3 553 aa25.24■■□□□ 1.63
CHMP3-207ENST00000485465 EID1Q9Y6B2 187 aa25.24■■□□□ 1.63
CHMP3-207ENST00000485465 ADGRF5Q8IZF2 1346 aa25.23■■□□□ 1.63
CHMP3-207ENST00000485465 LTKP29376 864 aa25.23■■□□□ 1.63
CHMP3-207ENST00000485465 HSPA2P54652 639 aa25.21■■□□□ 1.63
CHMP3-207ENST00000485465 ANKLE2Q86XL3 938 aa25.21■■□□□ 1.63
CHMP3-207ENST00000485465 SCAF11Q99590 1463 aaKnown RBP25.19■■□□□ 1.62
CHMP3-207ENST00000485465 NRXN1Q9ULB1 1477 aa25.19■■□□□ 1.62
CHMP3-207ENST00000485465 PRAG1Q86YV5 1406 aa25.18■■□□□ 1.62
CHMP3-207ENST00000485465 NBPF8Q3BBV2 869 aa25.17■■□□□ 1.62
CHMP3-207ENST00000485465 PLEKHG1Q9ULL1 1385 aa25.15■■□□□ 1.62
CHMP3-207ENST00000485465 NCKAP5LQ9HCH0 1330 aa25.14■■□□□ 1.62
CHMP3-207ENST00000485465 PIK3C2GO75747 1445 aa25.14■■□□□ 1.62
CHMP3-207ENST00000485465 SENP3Q9H4L4 574 aaPredicted RBP25.12■■□□□ 1.61
CHMP3-207ENST00000485465 BCANQ96GW7 911 aa25.1■■□□□ 1.61
CHMP3-207ENST00000485465 MED14O60244 1454 aa25.09■■□□□ 1.61
CHMP3-207ENST00000485465 CFAP70Q5T0N1 1121 aa25.09■■□□□ 1.61
CHMP3-207ENST00000485465 C14orf93Q9H972 538 aaKnown RBP25.09■■□□□ 1.61
CHMP3-207ENST00000485465 SETBP1Q9Y6X0 1596 aa25.09■■□□□ 1.61
CHMP3-207ENST00000485465 POLR1AO95602 1720 aaPredicted RBP25.09■■□□□ 1.61
CHMP3-207ENST00000485465 NPHP4O75161 1426 aaPredicted RBP25.08■■□□□ 1.61
CHMP3-207ENST00000485465 NRXN3Q9Y4C0 1643 aa25.06■■□□□ 1.6
CHMP3-207ENST00000485465 ALKQ9UM73 1620 aa25.05■■□□□ 1.6
CHMP3-207ENST00000485465 ADAMTS13Q76LX8 1427 aa25.05■■□□□ 1.6
CHMP3-207ENST00000485465 TRPM1Q7Z4N2 1603 aa25.04■■□□□ 1.6
CHMP3-207ENST00000485465 IQGAP1P46940 1657 aa25.04■■□□□ 1.6
CHMP3-207ENST00000485465 KIAA1210Q9ULL0 1709 aa25.03■■□□□ 1.6
CHMP3-207ENST00000485465 RALGAPBQ86X10 1494 aa25.03■■□□□ 1.6
CHMP3-207ENST00000485465 STRCQ7RTU9 1775 aa25.03■■□□□ 1.6
CHMP3-207ENST00000485465 NBPF1Q3BBV0 1214 aa25.03■■□□□ 1.6
CHMP3-207ENST00000485465 SLC26A8Q96RN1 970 aa25.03■■□□□ 1.6
CHMP3-207ENST00000485465 LAMC1P11047 1609 aa25.02■■□□□ 1.6
CHMP3-207ENST00000485465 TBX22Q9Y458 520 aa25.02■■□□□ 1.6
CHMP3-207ENST00000485465 ROCK2O75116 1388 aaKnown RBP25■■□□□ 1.59
CHMP3-207ENST00000485465 DIP2AQ14689 1571 aa24.99■■□□□ 1.59
CHMP3-207ENST00000485465 TMEM132EQ6IEE7 984 aa24.98■■□□□ 1.59
CHMP3-207ENST00000485465 SETD1AO15047 1707 aaKnown RBP24.98■■□□□ 1.59
CHMP3-207ENST00000485465 METP08581 1390 aa24.97■■□□□ 1.59
CHMP3-207ENST00000485465 GPRASP1Q5JY77 1395 aa24.97■■□□□ 1.59
CHMP3-207ENST00000485465 ADGRB1O14514 1584 aa24.97■■□□□ 1.59
CHMP3-207ENST00000485465 ASXL1Q8IXJ9 1541 aa24.96■■□□□ 1.59
CHMP3-207ENST00000485465 CARD11Q9BXL7 1154 aa24.95■■□□□ 1.58
CHMP3-207ENST00000485465 DMRT2Q9Y5R5 561 aa24.94■■□□□ 1.58
CHMP3-207ENST00000485465 PIK3R4Q99570 1358 aa24.92■■□□□ 1.58
CHMP3-207ENST00000485465 YTHDC2Q9H6S0 1430 aaKnown RBP24.9■■□□□ 1.58
CHMP3-207ENST00000485465 LRPPRCP42704 1394 aaKnown RBP24.89■■□□□ 1.57
CHMP3-207ENST00000485465 PTPRUQ92729 1446 aa24.88■■□□□ 1.57
CHMP3-207ENST00000485465 STK26Q9P289 416 aa24.88■■□□□ 1.57
CHMP3-207ENST00000485465 ABCC11Q96J66 1382 aa24.86■■□□□ 1.57
CHMP3-207ENST00000485465 TRAK1Q9UPV9 953 aa24.86■■□□□ 1.57
CHMP3-207ENST00000485465 AMOTL2Q9Y2J4 779 aa24.86■■□□□ 1.57
CHMP3-207ENST00000485465 KCNA6P17658 529 aa24.84■■□□□ 1.57
CHMP3-207ENST00000485465 USP47Q96K76 1375 aa24.82■■□□□ 1.56
CHMP3-207ENST00000485465 TECPR2O15040 1411 aa24.82■■□□□ 1.56
CHMP3-207ENST00000485465 CHD2O14647 1828 aaKnown RBP24.82■■□□□ 1.56
CHMP3-207ENST00000485465 EIF4G2P78344 907 aaKnown RBP eCLIP24.81■■□□□ 1.56
CHMP3-207ENST00000485465 SIRT1Q96EB6 747 aa24.8■■□□□ 1.56
CHMP3-207ENST00000485465 XRN1Q8IZH2 1706 aaKnown RBP24.8■■□□□ 1.56
CHMP3-207ENST00000485465 DLC1Q96QB1 1528 aa24.8■■□□□ 1.56
CHMP3-207ENST00000485465 EIF3AQ14152 1382 aaKnown RBP24.8■■□□□ 1.56
CHMP3-207ENST00000485465 KNDC1Q76NI1 1749 aa24.79■■□□□ 1.56
CHMP3-207ENST00000485465 NWD1Q149M9 1564 aa24.79■■□□□ 1.56
CHMP3-207ENST00000485465 HSPA5P11021 654 aaKnown RBP24.78■■□□□ 1.56
CHMP3-207ENST00000485465 CPS1P31327 1500 aa24.77■■□□□ 1.56
CHMP3-207ENST00000485465 ROBO2Q9HCK4 1378 aa24.77■■□□□ 1.56
CHMP3-207ENST00000485465 PTCH1Q13635 1447 aa24.77■■□□□ 1.56
CHMP3-207ENST00000485465 PRAM1Q96QH2 718 aa24.76■■□□□ 1.55
CHMP3-207ENST00000485465 FAM135BQ49AJ0 1406 aa24.76■■□□□ 1.55
CHMP3-207ENST00000485465 ARHGEF28Q8N1W1 1705 aaKnown RBP24.75■■□□□ 1.55
CHMP3-207ENST00000485465 ST20-MTHFSA0A0A6YYL1 179 aa24.75■■□□□ 1.55
CHMP3-207ENST00000485465 POGKQ9P215 609 aa24.75■■□□□ 1.55
CHMP3-207ENST00000485465 ZNF335Q9H4Z2 1342 aaPredicted RBP24.75■■□□□ 1.55
CHMP3-207ENST00000485465 WAPLQ7Z5K2 1190 aa24.74■■□□□ 1.55
CHMP3-207ENST00000485465 CENPJQ9HC77 1338 aaPredicted RBP24.74■■□□□ 1.55
CHMP3-207ENST00000485465 NKTRP30414 1462 aaKnown RBP24.72■■□□□ 1.55
CHMP3-207ENST00000485465 PLEKHH1Q9ULM0 1364 aa24.72■■□□□ 1.55
CHMP3-207ENST00000485465 STRCP1A6NGW2 1772 aa24.72■■□□□ 1.55
CHMP3-207ENST00000485465 SAFB2Q14151 953 aaKnown RBP eCLIP24.7■■□□□ 1.54
CHMP3-207ENST00000485465 HIRIP3Q9BW71 556 aaPredicted RBP24.7■■□□□ 1.54
CHMP3-207ENST00000485465 PROSER2Q86WR7 435 aaPredicted RBP24.69■■□□□ 1.54
CHMP3-207ENST00000485465 TESK2Q96S53 571 aa24.67■■□□□ 1.54
CHMP3-207ENST00000485465 QRICH2Q9H0J4 1663 aa24.65■■□□□ 1.54
CHMP3-207ENST00000485465 SBNO2Q9Y2G9 1366 aa24.65■■□□□ 1.54
CHMP3-207ENST00000485465 RBM33Q96EV2 1170 aaKnown RBP24.64■■□□□ 1.54
CHMP3-207ENST00000485465 MINK1Q8N4C8 1332 aaPredicted RBP24.63■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms