RNA–Protein interactions for RNA: ENST00000484733.6

SCFD1-206, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 2,308 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-206ENST00000484733 MED1Q15648 1581 aaPredicted RBP17.58■□□□□ 0.4
SCFD1-206ENST00000484733 MYO5BQ9ULV0 1848 aa17.57■□□□□ 0.4
SCFD1-206ENST00000484733 PLEKHG1Q9ULL1 1385 aa17.56■□□□□ 0.4
SCFD1-206ENST00000484733 RIMS2Q9UQ26 1411 aa17.56■□□□□ 0.4
SCFD1-206ENST00000484733 SLC26A8Q96RN1 970 aa17.55■□□□□ 0.4
SCFD1-206ENST00000484733 NKTRP30414 1462 aaKnown RBP17.55■□□□□ 0.4
SCFD1-206ENST00000484733 TMEM94Q12767 1356 aa17.54■□□□□ 0.4
SCFD1-206ENST00000484733 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.54■□□□□ 0.4
SCFD1-206ENST00000484733 NUP155O75694 1391 aa17.53■□□□□ 0.4
SCFD1-206ENST00000484733 FAM135BQ49AJ0 1406 aa17.53■□□□□ 0.4
SCFD1-206ENST00000484733 PROSER2Q86WR7 435 aaPredicted RBP17.52■□□□□ 0.39
SCFD1-206ENST00000484733 CHD2O14647 1828 aaKnown RBP17.51■□□□□ 0.39
SCFD1-206ENST00000484733 TBX22Q9Y458 520 aa17.51■□□□□ 0.39
SCFD1-206ENST00000484733 RRBP1Q9P2E9 1410 aaKnown RBP17.5■□□□□ 0.39
SCFD1-206ENST00000484733 BCANQ96GW7 911 aa17.49■□□□□ 0.39
SCFD1-206ENST00000484733 PPP1R15AO75807 674 aaPredicted RBP17.49■□□□□ 0.39
SCFD1-206ENST00000484733 ITGAEP38570 1179 aa17.49■□□□□ 0.39
SCFD1-206ENST00000484733 DIP2AQ14689 1571 aa17.48■□□□□ 0.39
SCFD1-206ENST00000484733 PPARGC1BQ86YN6 1023 aaKnown RBP17.48■□□□□ 0.39
SCFD1-206ENST00000484733 NCOA3Q9Y6Q9 1424 aa17.47■□□□□ 0.39
SCFD1-206ENST00000484733 CHGAP10645 457 aaKnown RBP17.47■□□□□ 0.39
SCFD1-206ENST00000484733 PIK3R4Q99570 1358 aa17.46■□□□□ 0.39
SCFD1-206ENST00000484733 ADAMTS13Q76LX8 1427 aa17.46■□□□□ 0.39
SCFD1-206ENST00000484733 MSH6P52701 1360 aa17.45■□□□□ 0.38
SCFD1-206ENST00000484733 SPHKAPQ2M3C7 1700 aa17.45■□□□□ 0.38
SCFD1-206ENST00000484733 ROBO1Q9Y6N7 1651 aa17.43■□□□□ 0.38
SCFD1-206ENST00000484733 RBM33Q96EV2 1170 aaKnown RBP17.42■□□□□ 0.38
SCFD1-206ENST00000484733 NAIPQ13075 1403 aa17.41■□□□□ 0.38
SCFD1-206ENST00000484733 PHF23Q9BUL5 403 aaPredicted RBP17.41■□□□□ 0.38
SCFD1-206ENST00000484733 SENP3Q9H4L4 574 aaPredicted RBP17.41■□□□□ 0.38
SCFD1-206ENST00000484733 TRPM2O94759 1503 aa17.4■□□□□ 0.38
SCFD1-206ENST00000484733 SLAIN2Q9P270 581 aa17.39■□□□□ 0.37
SCFD1-206ENST00000484733 NUTM2DQ5VT03 806 aaPredicted RBP17.38■□□□□ 0.37
SCFD1-206ENST00000484733 SETBP1Q9Y6X0 1596 aa17.38■□□□□ 0.37
SCFD1-206ENST00000484733 NRXN3Q9Y4C0 1643 aa17.37■□□□□ 0.37
SCFD1-206ENST00000484733 CLTCL1P53675 1640 aa17.36■□□□□ 0.37
SCFD1-206ENST00000484733 HFM1A2PYH4 1435 aa17.35■□□□□ 0.37
SCFD1-206ENST00000484733 PTPRUQ92729 1446 aa17.35■□□□□ 0.37
SCFD1-206ENST00000484733 C19orf44Q9H6X5 657 aa17.34■□□□□ 0.37
SCFD1-206ENST00000484733 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.34■□□□□ 0.37
SCFD1-206ENST00000484733 AMOTL2Q9Y2J4 779 aa17.34■□□□□ 0.37
SCFD1-206ENST00000484733 PHLPP1O60346 1717 aa17.34■□□□□ 0.37
SCFD1-206ENST00000484733 XRN1Q8IZH2 1706 aaKnown RBP17.33■□□□□ 0.37
SCFD1-206ENST00000484733 CADPS2Q86UW7 1296 aa17.33■□□□□ 0.36
SCFD1-206ENST00000484733 NEXMIFQ5QGS0 1516 aa17.33■□□□□ 0.36
SCFD1-206ENST00000484733 KIF1BO60333 1816 aa17.32■□□□□ 0.36
SCFD1-206ENST00000484733 ZNF326Q5BKZ1 582 aaKnown RBP17.32■□□□□ 0.36
SCFD1-206ENST00000484733 RGS17Q9UGC6 210 aaPredicted RBP17.32■□□□□ 0.36
SCFD1-206ENST00000484733 C14orf37Q86TY3 774 aa17.3■□□□□ 0.36
SCFD1-206ENST00000484733 DCCP43146 1447 aa17.3■□□□□ 0.36
SCFD1-206ENST00000484733 ATF3P18847 181 aa17.3■□□□□ 0.36
SCFD1-206ENST00000484733 JCADQ9P266 1359 aa17.29■□□□□ 0.36
SCFD1-206ENST00000484733 COL16A1Q07092 1604 aaPredicted RBP17.29■□□□□ 0.36
SCFD1-206ENST00000484733 AHDC1Q5TGY3 1603 aaPredicted RBP17.29■□□□□ 0.36
SCFD1-206ENST00000484733 TRIM52Q96A61 297 aa17.27■□□□□ 0.36
SCFD1-206ENST00000484733 METP08581 1390 aa17.27■□□□□ 0.36
SCFD1-206ENST00000484733 RPGRIP1LQ68CZ1 1315 aa17.26■□□□□ 0.35
SCFD1-206ENST00000484733 SLC4A1APQ9BWU0 796 aaKnown RBP17.25■□□□□ 0.35
SCFD1-206ENST00000484733 VGFO15240 615 aaPredicted RBP17.24■□□□□ 0.35
SCFD1-206ENST00000484733 SPATA31A6Q5VVP1 1343 aa17.22■□□□□ 0.35
SCFD1-206ENST00000484733 SETD1AO15047 1707 aaKnown RBP17.22■□□□□ 0.35
SCFD1-206ENST00000484733 BRINP3Q76B58 766 aa17.22■□□□□ 0.35
SCFD1-206ENST00000484733 SHPRHQ149N8 1683 aa17.22■□□□□ 0.35
SCFD1-206ENST00000484733 MST1RQ04912 1400 aa17.21■□□□□ 0.35
SCFD1-206ENST00000484733 PRAG1Q86YV5 1406 aa17.21■□□□□ 0.35
SCFD1-206ENST00000484733 ADGRL3Q9HAR2 1447 aa17.21■□□□□ 0.35
SCFD1-206ENST00000484733 POTEAQ6S8J7 498 aa17.21■□□□□ 0.35
SCFD1-206ENST00000484733 PPLO60437 1756 aa17.2■□□□□ 0.34
SCFD1-206ENST00000484733 PTCH1Q13635 1447 aa17.19■□□□□ 0.34
SCFD1-206ENST00000484733 ASXL1Q8IXJ9 1541 aa17.19■□□□□ 0.34
SCFD1-206ENST00000484733 ACIN1Q9UKV3 1341 aaKnown RBP17.18■□□□□ 0.34
SCFD1-206ENST00000484733 NHSL1Q5SYE7 1610 aa17.18■□□□□ 0.34
SCFD1-206ENST00000484733 NALCNQ8IZF0 1738 aa17.18■□□□□ 0.34
SCFD1-206ENST00000484733 SETD5Q9C0A6 1442 aa17.17■□□□□ 0.34
SCFD1-206ENST00000484733 LRP6O75581 1613 aa17.16■□□□□ 0.34
SCFD1-206ENST00000484733 MPHOSPH9Q99550 1183 aa17.14■□□□□ 0.33
SCFD1-206ENST00000484733 CCDC144AA2RUR9 1427 aa17.13■□□□□ 0.33
SCFD1-206ENST00000484733 ROBO2Q9HCK4 1378 aa17.13■□□□□ 0.33
SCFD1-206ENST00000484733 LAMC1P11047 1609 aa17.13■□□□□ 0.33
SCFD1-206ENST00000484733 SPATA31E1Q6ZUB1 1445 aa17.13■□□□□ 0.33
SCFD1-206ENST00000484733 FOXD1Q16676 465 aa17.12■□□□□ 0.33
SCFD1-206ENST00000484733 C1orf167Q5SNV9 1468 aa17.12■□□□□ 0.33
SCFD1-206ENST00000484733 LRRC59Q96AG4 307 aaKnown RBP17.12■□□□□ 0.33
SCFD1-206ENST00000484733 IFT172Q9UG01 1749 aa17.11■□□□□ 0.33
SCFD1-206ENST00000484733 ZNF772Q68DY9 489 aaPredicted RBP17.11■□□□□ 0.33
SCFD1-206ENST00000484733 ANKRD30BQ9BXX2 1392 aa17.11■□□□□ 0.33
SCFD1-206ENST00000484733 MEX3CQ5U5Q3 659 aaKnown RBP17.1■□□□□ 0.33
SCFD1-206ENST00000484733 ADGRF5Q8IZF2 1346 aa17.08■□□□□ 0.33
SCFD1-206ENST00000484733 TECPR2O15040 1411 aa17.07■□□□□ 0.32
SCFD1-206ENST00000484733 PNPLA6Q8IY17 1366 aa17.07■□□□□ 0.32
SCFD1-206ENST00000484733 CDC42BPGQ6DT37 1551 aa17.05■□□□□ 0.32
SCFD1-206ENST00000484733 LRPPRCP42704 1394 aaKnown RBP17.05■□□□□ 0.32
SCFD1-206ENST00000484733 RGL3Q3MIN7 710 aa17.05■□□□□ 0.32
SCFD1-206ENST00000484733 SOS2Q07890 1332 aaPredicted RBP17.04■□□□□ 0.32
SCFD1-206ENST00000484733 KNDC1Q76NI1 1749 aa17.04■□□□□ 0.32
SCFD1-206ENST00000484733 PIK3C2GO75747 1445 aa17.04■□□□□ 0.32
SCFD1-206ENST00000484733 ABCC11Q96J66 1382 aa17.04■□□□□ 0.32
SCFD1-206ENST00000484733 NUTM2BA6NNL0 878 aaPredicted RBP17.04■□□□□ 0.32
SCFD1-206ENST00000484733 NUTM2EB1AL46 878 aaPredicted RBP17.04■□□□□ 0.32
SCFD1-206ENST00000484733 NUTM2AQ8IVF1 878 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms