RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 RIMS2Q9UQ26 1411 aa23.58■■□□□ 1.36
UPF3A-208ENST00000484246 LTBP4Q8N2S1 1624 aa23.56■■□□□ 1.36
UPF3A-208ENST00000484246 HDGFP51858 240 aaKnown RBP23.53■■□□□ 1.36
UPF3A-208ENST00000484246 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.53■■□□□ 1.36
UPF3A-208ENST00000484246 PLEKHG1Q9ULL1 1385 aa23.52■■□□□ 1.36
UPF3A-208ENST00000484246 CCDC144AA2RUR9 1427 aa23.52■■□□□ 1.36
UPF3A-208ENST00000484246 TRIM26Q12899 539 aaPredicted RBP23.52■■□□□ 1.36
UPF3A-208ENST00000484246 CHGAP10645 457 aaKnown RBP23.51■■□□□ 1.35
UPF3A-208ENST00000484246 ZNF335Q9H4Z2 1342 aaPredicted RBP23.49■■□□□ 1.35
UPF3A-208ENST00000484246 MYO5BQ9ULV0 1848 aa23.49■■□□□ 1.35
UPF3A-208ENST00000484246 SPATA31E1Q6ZUB1 1445 aa23.48■■□□□ 1.35
UPF3A-208ENST00000484246 IQSEC2Q5JU85 1478 aa23.48■■□□□ 1.35
UPF3A-208ENST00000484246 ANKRD30BQ9BXX2 1392 aa23.47■■□□□ 1.35
UPF3A-208ENST00000484246 NEXMIFQ5QGS0 1516 aa23.47■■□□□ 1.35
UPF3A-208ENST00000484246 CPS1P31327 1500 aa23.46■■□□□ 1.35
UPF3A-208ENST00000484246 CERKQ8TCT0 537 aa23.45■■□□□ 1.34
UPF3A-208ENST00000484246 RPGRIP1LQ68CZ1 1315 aa23.44■■□□□ 1.34
UPF3A-208ENST00000484246 PPP1R15AO75807 674 aaPredicted RBP23.44■■□□□ 1.34
UPF3A-208ENST00000484246 KIF1BO60333 1816 aa23.43■■□□□ 1.34
UPF3A-208ENST00000484246 DIP2AQ14689 1571 aa23.43■■□□□ 1.34
UPF3A-208ENST00000484246 ADAMTS13Q76LX8 1427 aa23.42■■□□□ 1.34
UPF3A-208ENST00000484246 SETBP1Q9Y6X0 1596 aa23.42■■□□□ 1.34
UPF3A-208ENST00000484246 ZNF326Q5BKZ1 582 aaKnown RBP23.4■■□□□ 1.34
UPF3A-208ENST00000484246 TBX22Q9Y458 520 aa23.39■■□□□ 1.33
UPF3A-208ENST00000484246 NWD1Q149M9 1564 aa23.39■■□□□ 1.33
UPF3A-208ENST00000484246 PIK3R4Q99570 1358 aa23.38■■□□□ 1.33
UPF3A-208ENST00000484246 PIAS4Q8N2W9 510 aaPredicted RBP23.36■■□□□ 1.33
UPF3A-208ENST00000484246 SLC26A8Q96RN1 970 aa23.36■■□□□ 1.33
UPF3A-208ENST00000484246 NRXN3Q9Y4C0 1643 aa23.36■■□□□ 1.33
UPF3A-208ENST00000484246 NKTRP30414 1462 aaKnown RBP23.35■■□□□ 1.33
UPF3A-208ENST00000484246 VGFO15240 615 aaPredicted RBP23.34■■□□□ 1.33
UPF3A-208ENST00000484246 KCNA6P17658 529 aa23.33■■□□□ 1.33
UPF3A-208ENST00000484246 NUTM2DQ5VT03 806 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-208ENST00000484246 LRRC7Q96NW7 1537 aa23.32■■□□□ 1.32
UPF3A-208ENST00000484246 STRCP1A6NGW2 1772 aa23.32■■□□□ 1.32
UPF3A-208ENST00000484246 PPLO60437 1756 aa23.32■■□□□ 1.32
UPF3A-208ENST00000484246 ILDR2Q71H61 639 aa23.3■■□□□ 1.32
UPF3A-208ENST00000484246 BCANQ96GW7 911 aa23.3■■□□□ 1.32
UPF3A-208ENST00000484246 MYOM2P54296 1465 aa23.3■■□□□ 1.32
UPF3A-208ENST00000484246 DISP3Q9P2K9 1392 aa23.29■■□□□ 1.32
UPF3A-208ENST00000484246 IFT172Q9UG01 1749 aa23.29■■□□□ 1.32
UPF3A-208ENST00000484246 NRXN1Q9ULB1 1477 aa23.27■■□□□ 1.32
UPF3A-208ENST00000484246 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.31
UPF3A-208ENST00000484246 RGL3Q3MIN7 710 aa23.26■■□□□ 1.31
UPF3A-208ENST00000484246 PIK3C2GO75747 1445 aa23.25■■□□□ 1.31
UPF3A-208ENST00000484246 PRAG1Q86YV5 1406 aa23.25■■□□□ 1.31
UPF3A-208ENST00000484246 ADGRF5Q8IZF2 1346 aa23.23■■□□□ 1.31
UPF3A-208ENST00000484246 METP08581 1390 aa23.23■■□□□ 1.31
UPF3A-208ENST00000484246 PTPRUQ92729 1446 aa23.23■■□□□ 1.31
UPF3A-208ENST00000484246 ALKQ9UM73 1620 aa23.22■■□□□ 1.31
UPF3A-208ENST00000484246 SETD1AO15047 1707 aaKnown RBP23.22■■□□□ 1.31
UPF3A-208ENST00000484246 XRN1Q8IZH2 1706 aaKnown RBP23.22■■□□□ 1.31
UPF3A-208ENST00000484246 CHD2O14647 1828 aaKnown RBP23.22■■□□□ 1.31
UPF3A-208ENST00000484246 STAC3Q96MF2 364 aa23.22■■□□□ 1.31
UPF3A-208ENST00000484246 NCOA3Q9Y6Q9 1424 aa23.22■■□□□ 1.31
UPF3A-208ENST00000484246 TMEM94Q12767 1356 aa23.2■■□□□ 1.3
UPF3A-208ENST00000484246 PTCH1Q13635 1447 aa23.16■■□□□ 1.3
UPF3A-208ENST00000484246 AMOTL2Q9Y2J4 779 aa23.16■■□□□ 1.3
UPF3A-208ENST00000484246 PROSER2Q86WR7 435 aaPredicted RBP23.15■■□□□ 1.3
UPF3A-208ENST00000484246 ASXL1Q8IXJ9 1541 aa23.13■■□□□ 1.29
UPF3A-208ENST00000484246 LAMC1P11047 1609 aa23.13■■□□□ 1.29
UPF3A-208ENST00000484246 SOCS7O14512 581 aa23.13■■□□□ 1.29
UPF3A-208ENST00000484246 TECPR2O15040 1411 aa23.13■■□□□ 1.29
UPF3A-208ENST00000484246 C14orf93Q9H972 538 aaKnown RBP23.12■■□□□ 1.29
UPF3A-208ENST00000484246 XIRP1Q702N8 1843 aaKnown RBP23.12■■□□□ 1.29
UPF3A-208ENST00000484246 UBAP1LF5GYI3 381 aa23.11■■□□□ 1.29
UPF3A-208ENST00000484246 TOM1O60784 492 aa23.1■■□□□ 1.29
UPF3A-208ENST00000484246 LRPPRCP42704 1394 aaKnown RBP23.09■■□□□ 1.29
UPF3A-208ENST00000484246 DCAF11Q8TEB1 546 aa23.08■■□□□ 1.29
UPF3A-208ENST00000484246 MSH6P52701 1360 aa23.08■■□□□ 1.29
UPF3A-208ENST00000484246 ABCC11Q96J66 1382 aa23.07■■□□□ 1.28
UPF3A-208ENST00000484246 PCGF6Q9BYE7 350 aa23.07■■□□□ 1.28
UPF3A-208ENST00000484246 DCCP43146 1447 aa23.07■■□□□ 1.28
UPF3A-208ENST00000484246 ROBO2Q9HCK4 1378 aa23.05■■□□□ 1.28
UPF3A-208ENST00000484246 ADGRB1O14514 1584 aa23.05■■□□□ 1.28
UPF3A-208ENST00000484246 YTHDC2Q9H6S0 1430 aaKnown RBP23.04■■□□□ 1.28
UPF3A-208ENST00000484246 ADGRL3Q9HAR2 1447 aa23.04■■□□□ 1.28
UPF3A-208ENST00000484246 KNDC1Q76NI1 1749 aa23.03■■□□□ 1.28
UPF3A-208ENST00000484246 CFAP70Q5T0N1 1121 aa23.03■■□□□ 1.28
UPF3A-208ENST00000484246 RBM33Q96EV2 1170 aaKnown RBP23.03■■□□□ 1.28
UPF3A-208ENST00000484246 SIN3AQ96ST3 1273 aa23.03■■□□□ 1.28
UPF3A-208ENST00000484246 C19orf44Q9H6X5 657 aa23.02■■□□□ 1.28
UPF3A-208ENST00000484246 FAM135BQ49AJ0 1406 aa23.01■■□□□ 1.27
UPF3A-208ENST00000484246 SIRT1Q96EB6 747 aa23■■□□□ 1.27
UPF3A-208ENST00000484246 KDM2AQ9Y2K7 1162 aa23■■□□□ 1.27
UPF3A-208ENST00000484246 DLC1Q96QB1 1528 aa22.99■■□□□ 1.27
UPF3A-208ENST00000484246 L3MBTL2Q969R5 705 aa22.99■■□□□ 1.27
UPF3A-208ENST00000484246 TMEM132EQ6IEE7 984 aa22.98■■□□□ 1.27
UPF3A-208ENST00000484246 CADPS2Q86UW7 1296 aa22.98■■□□□ 1.27
UPF3A-208ENST00000484246 CLSPNQ9HAW4 1339 aa22.98■■□□□ 1.27
UPF3A-208ENST00000484246 KIAA1210Q9ULL0 1709 aa22.96■■□□□ 1.27
UPF3A-208ENST00000484246 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.96■■□□□ 1.27
UPF3A-208ENST00000484246 C14orf37Q86TY3 774 aa22.95■■□□□ 1.26
UPF3A-208ENST00000484246 NALCNQ8IZF0 1738 aa22.94■■□□□ 1.26
UPF3A-208ENST00000484246 NEUROD1Q13562 356 aa22.94■■□□□ 1.26
UPF3A-208ENST00000484246 ATF3P18847 181 aa22.92■■□□□ 1.26
UPF3A-208ENST00000484246 PIP4K2BP78356 416 aa22.92■■□□□ 1.26
UPF3A-208ENST00000484246 CDC42BPGQ6DT37 1551 aa22.92■■□□□ 1.26
UPF3A-208ENST00000484246 SLAIN2Q9P270 581 aa22.91■■□□□ 1.26
UPF3A-208ENST00000484246 STK26Q9P289 416 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms