RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 SLAIN2Q9P270 581 aa15.33■□□□□ 0.04
CPSF4-213ENST00000484112 CHGAP10645 457 aaKnown RBP15.32■□□□□ 0.04
CPSF4-213ENST00000484112 ADGRB3O60242 1522 aa15.32■□□□□ 0.04
CPSF4-213ENST00000484112 HDGFP51858 240 aaKnown RBP15.31■□□□□ 0.04
CPSF4-213ENST00000484112 KDM5AP29375 1690 aaKnown RBP15.31■□□□□ 0.04
CPSF4-213ENST00000484112 NUTM2DQ5VT03 806 aaPredicted RBP15.3■□□□□ 0.04
CPSF4-213ENST00000484112 C14orf37Q86TY3 774 aa15.3■□□□□ 0.04
CPSF4-213ENST00000484112 NKTRP30414 1462 aaKnown RBP15.29■□□□□ 0.04
CPSF4-213ENST00000484112 ANKRD50Q9ULJ7 1429 aa15.28■□□□□ 0.04
CPSF4-213ENST00000484112 RIMS2Q9UQ26 1411 aa15.27■□□□□ 0.04
CPSF4-213ENST00000484112 PLEKHG1Q9ULL1 1385 aa15.27■□□□□ 0.04
CPSF4-213ENST00000484112 NWD1Q149M9 1564 aa15.27■□□□□ 0.03
CPSF4-213ENST00000484112 JCADQ9P266 1359 aa15.26■□□□□ 0.03
CPSF4-213ENST00000484112 ADGRL2O95490 1459 aa15.26■□□□□ 0.03
CPSF4-213ENST00000484112 MEX3CQ5U5Q3 659 aaKnown RBP15.25■□□□□ 0.03
CPSF4-213ENST00000484112 TBX22Q9Y458 520 aa15.25■□□□□ 0.03
CPSF4-213ENST00000484112 PHLPP1O60346 1717 aa15.25■□□□□ 0.03
CPSF4-213ENST00000484112 RPRD2Q5VT52 1461 aaKnown RBP15.25■□□□□ 0.03
CPSF4-213ENST00000484112 ZFYVE9O95405 1425 aa15.25■□□□□ 0.03
CPSF4-213ENST00000484112 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.24■□□□□ 0.03
CPSF4-213ENST00000484112 ATF3P18847 181 aa15.22■□□□□ 0.03
CPSF4-213ENST00000484112 GCC2Q8IWJ2 1684 aa15.22■□□□□ 0.03
CPSF4-213ENST00000484112 MYO5BQ9ULV0 1848 aa15.22■□□□□ 0.03
CPSF4-213ENST00000484112 RRBP1Q9P2E9 1410 aaKnown RBP15.21■□□□□ 0.03
CPSF4-213ENST00000484112 CADPS2Q86UW7 1296 aa15.21■□□□□ 0.03
CPSF4-213ENST00000484112 CHD2O14647 1828 aaKnown RBP15.21■□□□□ 0.03
CPSF4-213ENST00000484112 C19orf44Q9H6X5 657 aa15.2■□□□□ 0.02
CPSF4-213ENST00000484112 TMEM131LA2VDJ0 1609 aa15.2■□□□□ 0.02
CPSF4-213ENST00000484112 TRIM52Q96A61 297 aa15.19■□□□□ 0.02
CPSF4-213ENST00000484112 SPATA31A6Q5VVP1 1343 aa15.18■□□□□ 0.02
CPSF4-213ENST00000484112 ADAMTS13Q76LX8 1427 aa15.18■□□□□ 0.02
CPSF4-213ENST00000484112 NCOA3Q9Y6Q9 1424 aa15.18■□□□□ 0.02
CPSF4-213ENST00000484112 SETD1AO15047 1707 aaKnown RBP15.18■□□□□ 0.02
CPSF4-213ENST00000484112 ITGAEP38570 1179 aa15.18■□□□□ 0.02
CPSF4-213ENST00000484112 AMOTL2Q9Y2J4 779 aa15.18■□□□□ 0.02
CPSF4-213ENST00000484112 ROCK1Q13464 1354 aa15.18■□□□□ 0.02
CPSF4-213ENST00000484112 NUTM2BA6NNL0 878 aaPredicted RBP15.17■□□□□ 0.02
CPSF4-213ENST00000484112 NUTM2EB1AL46 878 aaPredicted RBP15.17■□□□□ 0.02
CPSF4-213ENST00000484112 ZNF772Q68DY9 489 aaPredicted RBP15.17■□□□□ 0.02
CPSF4-213ENST00000484112 NUTM2AQ8IVF1 878 aaPredicted RBP15.17■□□□□ 0.02
CPSF4-213ENST00000484112 COL16A1Q07092 1604 aaPredicted RBP15.17■□□□□ 0.02
CPSF4-213ENST00000484112 LRP6O75581 1613 aa15.16■□□□□ 0.02
CPSF4-213ENST00000484112 NUP155O75694 1391 aa15.15■□□□□ 0.02
CPSF4-213ENST00000484112 PPARGC1BQ86YN6 1023 aaKnown RBP15.15■□□□□ 0.02
CPSF4-213ENST00000484112 PIK3R4Q99570 1358 aa15.14■□□□□ 0.01
CPSF4-213ENST00000484112 BRINP3Q76B58 766 aa15.14■□□□□ 0.01
CPSF4-213ENST00000484112 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.14■□□□□ 0.01
CPSF4-213ENST00000484112 E9PCH4 1651 aa15.13■□□□□ 0.01
CPSF4-213ENST00000484112 UNC13BO14795 1591 aa15.13■□□□□ 0.01
CPSF4-213ENST00000484112 ZNF326Q5BKZ1 582 aaKnown RBP15.13■□□□□ 0.01
CPSF4-213ENST00000484112 PTPRUQ92729 1446 aa15.12■□□□□ 0.01
CPSF4-213ENST00000484112 RXRBP28702 533 aa15.12■□□□□ 0.01
CPSF4-213ENST00000484112 UPF1Q92900 1129 aaKnown RBP eCLIP15.12■□□□□ 0.01
CPSF4-213ENST00000484112 DIP2AQ14689 1571 aa15.11■□□□□ 0.01
CPSF4-213ENST00000484112 TRPM2O94759 1503 aa15.11■□□□□ 0.01
CPSF4-213ENST00000484112 AHDC1Q5TGY3 1603 aaPredicted RBP15.1■□□□□ 0.01
CPSF4-213ENST00000484112 IQGAP3Q86VI3 1631 aa15.08■□□□□ 0
CPSF4-213ENST00000484112 DDX17Q92841 729 aaKnown RBP15.07■□□□□ 0
CPSF4-213ENST00000484112 AFF2P51816 1311 aa15.07■□□□□ 0
CPSF4-213ENST00000484112 SHPRHQ149N8 1683 aa15.06■□□□□ 0
CPSF4-213ENST00000484112 LRRC59Q96AG4 307 aaKnown RBP15.06■□□□□ 0
CPSF4-213ENST00000484112 C8orf37Q96NL8 207 aa15.06■□□□□ 0
CPSF4-213ENST00000484112 METP08581 1390 aa15.05■□□□□ -0
CPSF4-213ENST00000484112 ASXL1Q8IXJ9 1541 aa15.05■□□□□ -0
CPSF4-213ENST00000484112 DCCP43146 1447 aa15.04■□□□□ -0
CPSF4-213ENST00000484112 MST1RQ04912 1400 aa15.04■□□□□ -0
CPSF4-213ENST00000484112 QTRT2Q9H974 415 aaKnown RBP15.03■□□□□ -0
CPSF4-213ENST00000484112 SETD5Q9C0A6 1442 aa15.02■□□□□ -0
CPSF4-213ENST00000484112 NRXN3Q9Y4C0 1643 aa15.02□□□□□ -0.01
CPSF4-213ENST00000484112 ADAMTS2O95450 1211 aa15.01□□□□□ -0.01
CPSF4-213ENST00000484112 SETBP1Q9Y6X0 1596 aa15.01□□□□□ -0.01
CPSF4-213ENST00000484112 XRN1Q8IZH2 1706 aaKnown RBP15□□□□□ -0.01
CPSF4-213ENST00000484112 NGLY1Q96IV0 654 aa15□□□□□ -0.01
CPSF4-213ENST00000484112 HFM1A2PYH4 1435 aa15□□□□□ -0.01
CPSF4-213ENST00000484112 PNPLA6Q8IY17 1366 aa14.99□□□□□ -0.01
CPSF4-213ENST00000484112 ACIN1Q9UKV3 1341 aaKnown RBP14.99□□□□□ -0.01
CPSF4-213ENST00000484112 RBM6P78332 1123 aaKnown RBP14.99□□□□□ -0.01
CPSF4-213ENST00000484112 ADGRL3Q9HAR2 1447 aa14.99□□□□□ -0.01
CPSF4-213ENST00000484112 SPHKAPQ2M3C7 1700 aa14.98□□□□□ -0.01
CPSF4-213ENST00000484112 CDK12Q9NYV4 1490 aaPredicted RBP14.98□□□□□ -0.01
CPSF4-213ENST00000484112 NAIPQ13075 1403 aa14.98□□□□□ -0.01
CPSF4-213ENST00000484112 NHSL1Q5SYE7 1610 aa14.96□□□□□ -0.01
CPSF4-213ENST00000484112 RGS12O14924 1447 aa14.96□□□□□ -0.01
CPSF4-213ENST00000484112 ORAI2Q96SN7 254 aa14.96□□□□□ -0.01
CPSF4-213ENST00000484112 NEXMIFQ5QGS0 1516 aa14.95□□□□□ -0.02
CPSF4-213ENST00000484112 C1orf167Q5SNV9 1468 aa14.95□□□□□ -0.02
CPSF4-213ENST00000484112 VGFO15240 615 aaPredicted RBP14.94□□□□□ -0.02
CPSF4-213ENST00000484112 USP21Q9UK80 565 aa14.94□□□□□ -0.02
CPSF4-213ENST00000484112 CLTCL1P53675 1640 aa14.94□□□□□ -0.02
CPSF4-213ENST00000484112 NALCNQ8IZF0 1738 aa14.92□□□□□ -0.02
CPSF4-213ENST00000484112 ROBO2Q9HCK4 1378 aa14.92□□□□□ -0.02
CPSF4-213ENST00000484112 TRPC5Q9UL62 973 aaPredicted RBP14.91□□□□□ -0.02
CPSF4-213ENST00000484112 SOS2Q07890 1332 aaPredicted RBP14.91□□□□□ -0.02
CPSF4-213ENST00000484112 ESCO1Q5FWF5 840 aa14.89□□□□□ -0.03
CPSF4-213ENST00000484112 PTCH1Q13635 1447 aa14.89□□□□□ -0.03
CPSF4-213ENST00000484112 KIF1BO60333 1816 aa14.89□□□□□ -0.03
CPSF4-213ENST00000484112 RPGRIP1LQ68CZ1 1315 aa14.88□□□□□ -0.03
CPSF4-213ENST00000484112 ATAD2Q6PL18 1390 aa14.87□□□□□ -0.03
CPSF4-213ENST00000484112 XPCQ01831 940 aaPredicted RBP14.87□□□□□ -0.03
CPSF4-213ENST00000484112 SLC4A1APQ9BWU0 796 aaKnown RBP14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms