RNA–Protein interactions for RNA: ENST00000483275.1

VARS-226, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-226ENST00000483275 TMEM131LA2VDJ0 1609 aa21.59■■□□□ 1.05
VARS-226ENST00000483275 RPRD2Q5VT52 1461 aaKnown RBP21.58■■□□□ 1.04
VARS-226ENST00000483275 ZFYVE9O95405 1425 aa21.57■■□□□ 1.04
VARS-226ENST00000483275 BCANQ96GW7 911 aa21.57■■□□□ 1.04
VARS-226ENST00000483275 KCNA6P17658 529 aa21.56■■□□□ 1.04
VARS-226ENST00000483275 CHD2O14647 1828 aaKnown RBP21.55■■□□□ 1.04
VARS-226ENST00000483275 PROSER2Q86WR7 435 aaPredicted RBP21.55■■□□□ 1.04
VARS-226ENST00000483275 NKTRP30414 1462 aaKnown RBP21.55■■□□□ 1.04
VARS-226ENST00000483275 RIMS2Q9UQ26 1411 aa21.55■■□□□ 1.04
VARS-226ENST00000483275 SLC52A1Q9NWF4 448 aa21.53■■□□□ 1.04
VARS-226ENST00000483275 IQGAP3Q86VI3 1631 aa21.53■■□□□ 1.04
VARS-226ENST00000483275 FAM135BQ49AJ0 1406 aa21.52■■□□□ 1.04
VARS-226ENST00000483275 PPP1R15AO75807 674 aaPredicted RBP21.51■■□□□ 1.03
VARS-226ENST00000483275 PHLPP1O60346 1717 aa21.5■■□□□ 1.03
VARS-226ENST00000483275 CHGAP10645 457 aaKnown RBP21.5■■□□□ 1.03
VARS-226ENST00000483275 NUTM2DQ5VT03 806 aaPredicted RBP21.5■■□□□ 1.03
VARS-226ENST00000483275 PPARGC1BQ86YN6 1023 aaKnown RBP21.5■■□□□ 1.03
VARS-226ENST00000483275 RGS17Q9UGC6 210 aaPredicted RBP21.5■■□□□ 1.03
VARS-226ENST00000483275 PLEKHG1Q9ULL1 1385 aa21.49■■□□□ 1.03
VARS-226ENST00000483275 ITGAEP38570 1179 aa21.48■■□□□ 1.03
VARS-226ENST00000483275 MSH6P52701 1360 aa21.47■■□□□ 1.03
VARS-226ENST00000483275 ROCK1Q13464 1354 aa21.44■■□□□ 1.02
VARS-226ENST00000483275 ADAMTS13Q76LX8 1427 aa21.43■■□□□ 1.02
VARS-226ENST00000483275 SPHKAPQ2M3C7 1700 aa21.42■■□□□ 1.02
VARS-226ENST00000483275 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.41■■□□□ 1.02
VARS-226ENST00000483275 NUP155O75694 1391 aa21.41■■□□□ 1.02
VARS-226ENST00000483275 SETD1AO15047 1707 aaKnown RBP21.41■■□□□ 1.02
VARS-226ENST00000483275 COL16A1Q07092 1604 aaPredicted RBP21.4■■□□□ 1.02
VARS-226ENST00000483275 DIP2AQ14689 1571 aa21.4■■□□□ 1.02
VARS-226ENST00000483275 SLAIN2Q9P270 581 aa21.39■■□□□ 1.01
VARS-226ENST00000483275 NRXN3Q9Y4C0 1643 aa21.38■■□□□ 1.01
VARS-226ENST00000483275 POTEAQ6S8J7 498 aa21.38■■□□□ 1.01
VARS-226ENST00000483275 C14orf37Q86TY3 774 aa21.37■■□□□ 1.01
VARS-226ENST00000483275 TRPM2O94759 1503 aa21.36■■□□□ 1.01
VARS-226ENST00000483275 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.35■■□□□ 1.01
VARS-226ENST00000483275 TBX22Q9Y458 520 aa21.35■■□□□ 1.01
VARS-226ENST00000483275 PTPRUQ92729 1446 aa21.35■■□□□ 1.01
VARS-226ENST00000483275 XRN1Q8IZH2 1706 aaKnown RBP21.33■■□□□ 1.01
VARS-226ENST00000483275 HDGFP51858 240 aaKnown RBP21.33■■□□□ 1.01
VARS-226ENST00000483275 CLTCL1P53675 1640 aa21.33■■□□□ 1
VARS-226ENST00000483275 LRP6O75581 1613 aa21.32■■□□□ 1
VARS-226ENST00000483275 JCADQ9P266 1359 aa21.3■■□□□ 1
VARS-226ENST00000483275 AHDC1Q5TGY3 1603 aaPredicted RBP21.29■■□□□ 1
VARS-226ENST00000483275 SETBP1Q9Y6X0 1596 aa21.29■■□□□ 1
VARS-226ENST00000483275 SHPRHQ149N8 1683 aa21.28■■□□□ 1
VARS-226ENST00000483275 PIK3R4Q99570 1358 aa21.27■■□□□ 1
VARS-226ENST00000483275 AMOTL2Q9Y2J4 779 aa21.27■■□□□ 1
VARS-226ENST00000483275 NCOA3Q9Y6Q9 1424 aa21.27■■□□□ 1
VARS-226ENST00000483275 NEXMIFQ5QGS0 1516 aa21.25■□□□□ 0.99
VARS-226ENST00000483275 ATF3P18847 181 aa21.25■□□□□ 0.99
VARS-226ENST00000483275 ZNF326Q5BKZ1 582 aaKnown RBP21.25■□□□□ 0.99
VARS-226ENST00000483275 NALCNQ8IZF0 1738 aa21.25■□□□□ 0.99
VARS-226ENST00000483275 KIF1BO60333 1816 aa21.25■□□□□ 0.99
VARS-226ENST00000483275 CADPS2Q86UW7 1296 aa21.23■□□□□ 0.99
VARS-226ENST00000483275 C19orf44Q9H6X5 657 aa21.23■□□□□ 0.99
VARS-226ENST00000483275 ASXL1Q8IXJ9 1541 aa21.23■□□□□ 0.99
VARS-226ENST00000483275 METP08581 1390 aa21.23■□□□□ 0.99
VARS-226ENST00000483275 NHSL1Q5SYE7 1610 aa21.2■□□□□ 0.98
VARS-226ENST00000483275 BRINP3Q76B58 766 aa21.2■□□□□ 0.98
VARS-226ENST00000483275 MEX3CQ5U5Q3 659 aaKnown RBP21.19■□□□□ 0.98
VARS-226ENST00000483275 NAIPQ13075 1403 aa21.19■□□□□ 0.98
VARS-226ENST00000483275 MST1RQ04912 1400 aa21.18■□□□□ 0.98
VARS-226ENST00000483275 RRBP1Q9P2E9 1410 aaKnown RBP21.18■□□□□ 0.98
VARS-226ENST00000483275 DCCP43146 1447 aa21.17■□□□□ 0.98
VARS-226ENST00000483275 SPATA31A6Q5VVP1 1343 aa21.15■□□□□ 0.98
VARS-226ENST00000483275 NUTM2BA6NNL0 878 aaPredicted RBP21.15■□□□□ 0.98
VARS-226ENST00000483275 NUTM2EB1AL46 878 aaPredicted RBP21.15■□□□□ 0.98
VARS-226ENST00000483275 NUTM2AQ8IVF1 878 aaPredicted RBP21.15■□□□□ 0.98
VARS-226ENST00000483275 DDX17Q92841 729 aaKnown RBP21.15■□□□□ 0.98
VARS-226ENST00000483275 ADGRL3Q9HAR2 1447 aa21.14■□□□□ 0.98
VARS-226ENST00000483275 PPLO60437 1756 aa21.11■□□□□ 0.97
VARS-226ENST00000483275 TRIM52Q96A61 297 aa21.11■□□□□ 0.97
VARS-226ENST00000483275 HFM1A2PYH4 1435 aa21.07■□□□□ 0.96
VARS-226ENST00000483275 SETD5Q9C0A6 1442 aa21.07■□□□□ 0.96
VARS-226ENST00000483275 ROBO2Q9HCK4 1378 aa21.06■□□□□ 0.96
VARS-226ENST00000483275 ZNF772Q68DY9 489 aaPredicted RBP21.05■□□□□ 0.96
VARS-226ENST00000483275 FOXD1Q16676 465 aa21.04■□□□□ 0.96
VARS-226ENST00000483275 PNPLA6Q8IY17 1366 aa21.04■□□□□ 0.96
VARS-226ENST00000483275 C1orf167Q5SNV9 1468 aa21.04■□□□□ 0.96
VARS-226ENST00000483275 PTCH1Q13635 1447 aa21.04■□□□□ 0.96
VARS-226ENST00000483275 AFF2P51816 1311 aa21.04■□□□□ 0.96
VARS-226ENST00000483275 SLC4A1APQ9BWU0 796 aaKnown RBP21.01■□□□□ 0.95
VARS-226ENST00000483275 LAMC1P11047 1609 aa21■□□□□ 0.95
VARS-226ENST00000483275 C8orf37Q96NL8 207 aa21■□□□□ 0.95
VARS-226ENST00000483275 IFT172Q9UG01 1749 aa20.98■□□□□ 0.95
VARS-226ENST00000483275 RXRBP28702 533 aa20.98■□□□□ 0.95
VARS-226ENST00000483275 ORAI2Q96SN7 254 aa20.98■□□□□ 0.95
VARS-226ENST00000483275 VGFO15240 615 aaPredicted RBP20.97■□□□□ 0.95
VARS-226ENST00000483275 UPF1Q92900 1129 aaKnown RBP eCLIP20.97■□□□□ 0.95
VARS-226ENST00000483275 LRRC59Q96AG4 307 aaKnown RBP20.97■□□□□ 0.95
VARS-226ENST00000483275 RGS12O14924 1447 aa20.95■□□□□ 0.95
VARS-226ENST00000483275 ADAMTS2O95450 1211 aa20.95■□□□□ 0.94
VARS-226ENST00000483275 PRAG1Q86YV5 1406 aa20.95■□□□□ 0.94
VARS-226ENST00000483275 CDC42BPGQ6DT37 1551 aa20.94■□□□□ 0.94
VARS-226ENST00000483275 CDK12Q9NYV4 1490 aaPredicted RBP20.94■□□□□ 0.94
VARS-226ENST00000483275 RPGRIP1LQ68CZ1 1315 aa20.91■□□□□ 0.94
VARS-226ENST00000483275 ADGRF5Q8IZF2 1346 aa20.91■□□□□ 0.94
VARS-226ENST00000483275 COL22A1Q8NFW1 1626 aaPredicted RBP20.9■□□□□ 0.94
VARS-226ENST00000483275 CCDC144AA2RUR9 1427 aa20.89■□□□□ 0.94
VARS-226ENST00000483275 SOS2Q07890 1332 aaPredicted RBP20.89■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms