RNA–Protein interactions for RNA: ENST00000483030.1

CSDE1-206, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-206ENST00000483030 TET3O43151 1660 aa11.49□□□□□ -0.57
CSDE1-206ENST00000483030 PPP1R15AO75807 674 aaPredicted RBP11.48□□□□□ -0.57
CSDE1-206ENST00000483030 HDGFP51858 240 aaKnown RBP11.48□□□□□ -0.57
CSDE1-206ENST00000483030 MSH6P52701 1360 aa11.48□□□□□ -0.57
CSDE1-206ENST00000483030 CHGAP10645 457 aaKnown RBP11.47□□□□□ -0.57
CSDE1-206ENST00000483030 XIRP1Q702N8 1843 aaKnown RBP11.46□□□□□ -0.57
CSDE1-206ENST00000483030 CROCC2H7BZ55 1655 aa11.46□□□□□ -0.58
CSDE1-206ENST00000483030 NUTM2DQ5VT03 806 aaPredicted RBP11.45□□□□□ -0.58
CSDE1-206ENST00000483030 C14orf37Q86TY3 774 aa11.45□□□□□ -0.58
CSDE1-206ENST00000483030 TBX22Q9Y458 520 aa11.45□□□□□ -0.58
CSDE1-206ENST00000483030 ADGRB3O60242 1522 aa11.45□□□□□ -0.58
CSDE1-206ENST00000483030 NKTRP30414 1462 aaKnown RBP11.44□□□□□ -0.58
CSDE1-206ENST00000483030 ANKRD50Q9ULJ7 1429 aa11.44□□□□□ -0.58
CSDE1-206ENST00000483030 RIMS2Q9UQ26 1411 aa11.44□□□□□ -0.58
CSDE1-206ENST00000483030 PLEKHG1Q9ULL1 1385 aa11.44□□□□□ -0.58
CSDE1-206ENST00000483030 ZFYVE9O95405 1425 aa11.43□□□□□ -0.58
CSDE1-206ENST00000483030 JCADQ9P266 1359 aa11.43□□□□□ -0.58
CSDE1-206ENST00000483030 KDM5AP29375 1690 aaKnown RBP11.43□□□□□ -0.58
CSDE1-206ENST00000483030 ROBO1Q9Y6N7 1651 aa11.43□□□□□ -0.58
CSDE1-206ENST00000483030 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.43□□□□□ -0.58
CSDE1-206ENST00000483030 ADGRL2O95490 1459 aa11.43□□□□□ -0.58
CSDE1-206ENST00000483030 RPRD2Q5VT52 1461 aaKnown RBP11.42□□□□□ -0.58
CSDE1-206ENST00000483030 C19orf44Q9H6X5 657 aa11.41□□□□□ -0.58
CSDE1-206ENST00000483030 NWD1Q149M9 1564 aa11.41□□□□□ -0.58
CSDE1-206ENST00000483030 ATF3P18847 181 aa11.4□□□□□ -0.58
CSDE1-206ENST00000483030 CADPS2Q86UW7 1296 aa11.4□□□□□ -0.58
CSDE1-206ENST00000483030 MEX3CQ5U5Q3 659 aaKnown RBP11.39□□□□□ -0.59
CSDE1-206ENST00000483030 AMOTL2Q9Y2J4 779 aa11.39□□□□□ -0.59
CSDE1-206ENST00000483030 NCOA3Q9Y6Q9 1424 aa11.39□□□□□ -0.59
CSDE1-206ENST00000483030 SPATA31A6Q5VVP1 1343 aa11.38□□□□□ -0.59
CSDE1-206ENST00000483030 ADAMTS13Q76LX8 1427 aa11.38□□□□□ -0.59
CSDE1-206ENST00000483030 ZNF772Q68DY9 489 aaPredicted RBP11.37□□□□□ -0.59
CSDE1-206ENST00000483030 TRIM52Q96A61 297 aa11.37□□□□□ -0.59
CSDE1-206ENST00000483030 TMEM131LA2VDJ0 1609 aa11.36□□□□□ -0.59
CSDE1-206ENST00000483030 PHLPP1O60346 1717 aa11.36□□□□□ -0.59
CSDE1-206ENST00000483030 NUTM2BA6NNL0 878 aaPredicted RBP11.36□□□□□ -0.59
CSDE1-206ENST00000483030 NUTM2EB1AL46 878 aaPredicted RBP11.36□□□□□ -0.59
CSDE1-206ENST00000483030 NUTM2AQ8IVF1 878 aaPredicted RBP11.36□□□□□ -0.59
CSDE1-206ENST00000483030 PIK3R4Q99570 1358 aa11.36□□□□□ -0.59
CSDE1-206ENST00000483030 ITGAEP38570 1179 aa11.35□□□□□ -0.59
CSDE1-206ENST00000483030 BRINP3Q76B58 766 aa11.35□□□□□ -0.59
CSDE1-206ENST00000483030 NUP155O75694 1391 aa11.35□□□□□ -0.59
CSDE1-206ENST00000483030 LRP6O75581 1613 aa11.35□□□□□ -0.59
CSDE1-206ENST00000483030 CACNB1Q02641 598 aaPredicted RBP11.34□□□□□ -0.59
CSDE1-206ENST00000483030 UPF1Q92900 1129 aaKnown RBP eCLIP11.34□□□□□ -0.59
CSDE1-206ENST00000483030 CHD2O14647 1828 aaKnown RBP11.34□□□□□ -0.59
CSDE1-206ENST00000483030 ROCK1Q13464 1354 aa11.33□□□□□ -0.6
CSDE1-206ENST00000483030 RXRBP28702 533 aa11.33□□□□□ -0.6
CSDE1-206ENST00000483030 COL16A1Q07092 1604 aaPredicted RBP11.33□□□□□ -0.6
CSDE1-206ENST00000483030 PTPRUQ92729 1446 aa11.33□□□□□ -0.6
CSDE1-206ENST00000483030 ZNF326Q5BKZ1 582 aaKnown RBP11.32□□□□□ -0.6
CSDE1-206ENST00000483030 GCC2Q8IWJ2 1684 aa11.32□□□□□ -0.6
CSDE1-206ENST00000483030 MYO5BQ9ULV0 1848 aa11.31□□□□□ -0.6
CSDE1-206ENST00000483030 PPARGC1BQ86YN6 1023 aaKnown RBP11.3□□□□□ -0.6
CSDE1-206ENST00000483030 LRRC59Q96AG4 307 aaKnown RBP11.3□□□□□ -0.6
CSDE1-206ENST00000483030 AHDC1Q5TGY3 1603 aaPredicted RBP11.3□□□□□ -0.6
CSDE1-206ENST00000483030 AFF2P51816 1311 aa11.3□□□□□ -0.6
CSDE1-206ENST00000483030 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.29□□□□□ -0.6
CSDE1-206ENST00000483030 UNC13BO14795 1591 aa11.29□□□□□ -0.6
CSDE1-206ENST00000483030 DIP2AQ14689 1571 aa11.29□□□□□ -0.6
CSDE1-206ENST00000483030 DDX17Q92841 729 aaKnown RBP11.29□□□□□ -0.6
CSDE1-206ENST00000483030 E9PCH4 1651 aa11.29□□□□□ -0.6
CSDE1-206ENST00000483030 TRPM2O94759 1503 aa11.29□□□□□ -0.6
CSDE1-206ENST00000483030 SETD1AO15047 1707 aaKnown RBP11.29□□□□□ -0.6
CSDE1-206ENST00000483030 METP08581 1390 aa11.28□□□□□ -0.6
CSDE1-206ENST00000483030 C8orf37Q96NL8 207 aa11.27□□□□□ -0.61
CSDE1-206ENST00000483030 QTRT2Q9H974 415 aaKnown RBP11.27□□□□□ -0.61
CSDE1-206ENST00000483030 DCCP43146 1447 aa11.26□□□□□ -0.61
CSDE1-206ENST00000483030 MST1RQ04912 1400 aa11.26□□□□□ -0.61
CSDE1-206ENST00000483030 SETD5Q9C0A6 1442 aa11.26□□□□□ -0.61
CSDE1-206ENST00000483030 IQGAP3Q86VI3 1631 aa11.26□□□□□ -0.61
CSDE1-206ENST00000483030 ASXL1Q8IXJ9 1541 aa11.25□□□□□ -0.61
CSDE1-206ENST00000483030 KCNA4P22459 653 aa11.25□□□□□ -0.61
CSDE1-206ENST00000483030 ADAMTS2O95450 1211 aa11.24□□□□□ -0.61
CSDE1-206ENST00000483030 RBM6P78332 1123 aaKnown RBP11.24□□□□□ -0.61
CSDE1-206ENST00000483030 NGLY1Q96IV0 654 aa11.24□□□□□ -0.61
CSDE1-206ENST00000483030 SHPRHQ149N8 1683 aa11.24□□□□□ -0.61
CSDE1-206ENST00000483030 PNPLA6Q8IY17 1366 aa11.23□□□□□ -0.61
CSDE1-206ENST00000483030 ADGRL3Q9HAR2 1447 aa11.23□□□□□ -0.61
CSDE1-206ENST00000483030 CDK12Q9NYV4 1490 aaPredicted RBP11.23□□□□□ -0.61
CSDE1-206ENST00000483030 SETBP1Q9Y6X0 1596 aa11.23□□□□□ -0.61
CSDE1-206ENST00000483030 ORAI2Q96SN7 254 aa11.22□□□□□ -0.61
CSDE1-206ENST00000483030 NRXN3Q9Y4C0 1643 aa11.21□□□□□ -0.61
CSDE1-206ENST00000483030 VGFO15240 615 aaPredicted RBP11.21□□□□□ -0.61
CSDE1-206ENST00000483030 XRN1Q8IZH2 1706 aaKnown RBP11.21□□□□□ -0.62
CSDE1-206ENST00000483030 C1orf167Q5SNV9 1468 aa11.2□□□□□ -0.62
CSDE1-206ENST00000483030 ROBO2Q9HCK4 1378 aa11.19□□□□□ -0.62
CSDE1-206ENST00000483030 SOS2Q07890 1332 aaPredicted RBP11.19□□□□□ -0.62
CSDE1-206ENST00000483030 USP21Q9UK80 565 aa11.19□□□□□ -0.62
CSDE1-206ENST00000483030 RGS12O14924 1447 aa11.18□□□□□ -0.62
CSDE1-206ENST00000483030 NEXMIFQ5QGS0 1516 aa11.17□□□□□ -0.62
CSDE1-206ENST00000483030 NHSL1Q5SYE7 1610 aa11.17□□□□□ -0.62
CSDE1-206ENST00000483030 RPGRIP1LQ68CZ1 1315 aa11.16□□□□□ -0.62
CSDE1-206ENST00000483030 FNBP4Q8N3X1 1017 aaPredicted RBP11.16□□□□□ -0.62
CSDE1-206ENST00000483030 TRPC5Q9UL62 973 aaPredicted RBP11.16□□□□□ -0.62
CSDE1-206ENST00000483030 SPHKAPQ2M3C7 1700 aa11.15□□□□□ -0.62
CSDE1-206ENST00000483030 ESCO1Q5FWF5 840 aa11.15□□□□□ -0.62
CSDE1-206ENST00000483030 SLC4A1APQ9BWU0 796 aaKnown RBP11.15□□□□□ -0.62
CSDE1-206ENST00000483030 CLTCL1P53675 1640 aa11.15□□□□□ -0.62
CSDE1-206ENST00000483030 PTCH1Q13635 1447 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms