RNA–Protein interactions for RNA: ENST00000481910.1

HPS4-212, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 1,914 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-212ENST00000481910 ADGRB3O60242 1522 aa16.71■□□□□ 0.27
HPS4-212ENST00000481910 TONSLQ96HA7 1378 aa16.69■□□□□ 0.26
HPS4-212ENST00000481910 KDM5AP29375 1690 aaKnown RBP16.69■□□□□ 0.26
HPS4-212ENST00000481910 ZNF142P52746 1687 aaPredicted RBP16.69■□□□□ 0.26
HPS4-212ENST00000481910 NEURL4Q96JN8 1562 aa16.68■□□□□ 0.26
HPS4-212ENST00000481910 L3MBTL2Q969R5 705 aa16.68■□□□□ 0.26
HPS4-212ENST00000481910 DCAF11Q8TEB1 546 aa16.67■□□□□ 0.26
HPS4-212ENST00000481910 RPGRIP1LQ68CZ1 1315 aa16.66■□□□□ 0.26
HPS4-212ENST00000481910 HDGFP51858 240 aaKnown RBP16.66■□□□□ 0.26
HPS4-212ENST00000481910 TIMELESSQ9UNS1 1208 aa16.66■□□□□ 0.26
HPS4-212ENST00000481910 KDM2AQ9Y2K7 1162 aa16.66■□□□□ 0.26
HPS4-212ENST00000481910 NUTM2DQ5VT03 806 aaPredicted RBP16.65■□□□□ 0.26
HPS4-212ENST00000481910 TMEM2Q9UHN6 1383 aa16.65■□□□□ 0.26
HPS4-212ENST00000481910 LMTK3Q96Q04 1460 aa16.65■□□□□ 0.26
HPS4-212ENST00000481910 HSPA2P54652 639 aa16.64■□□□□ 0.25
HPS4-212ENST00000481910 BCL11AQ9H165 835 aa16.64■□□□□ 0.25
HPS4-212ENST00000481910 EID1Q9Y6B2 187 aa16.63■□□□□ 0.25
HPS4-212ENST00000481910 RIMS2Q9UQ26 1411 aa16.63■□□□□ 0.25
HPS4-212ENST00000481910 VGFO15240 615 aaPredicted RBP16.62■□□□□ 0.25
HPS4-212ENST00000481910 TXNDC2Q86VQ3 553 aa16.62■□□□□ 0.25
HPS4-212ENST00000481910 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.62■□□□□ 0.25
HPS4-212ENST00000481910 PPP1R15AO75807 674 aaPredicted RBP16.62■□□□□ 0.25
HPS4-212ENST00000481910 PPLO60437 1756 aa16.61■□□□□ 0.25
HPS4-212ENST00000481910 SLIT1O75093 1534 aa16.61■□□□□ 0.25
HPS4-212ENST00000481910 NEXMIFQ5QGS0 1516 aa16.61■□□□□ 0.25
HPS4-212ENST00000481910 ANKLE2Q86XL3 938 aa16.61■□□□□ 0.25
HPS4-212ENST00000481910 STAC3Q96MF2 364 aa16.61■□□□□ 0.25
HPS4-212ENST00000481910 ZFYVE9O95405 1425 aa16.61■□□□□ 0.25
HPS4-212ENST00000481910 LTKP29376 864 aa16.6■□□□□ 0.25
HPS4-212ENST00000481910 ARHGAP23Q9P227 1491 aa16.6■□□□□ 0.25
HPS4-212ENST00000481910 IFT172Q9UG01 1749 aa16.59■□□□□ 0.25
HPS4-212ENST00000481910 ADGRF5Q8IZF2 1346 aa16.58■□□□□ 0.25
HPS4-212ENST00000481910 BCANQ96GW7 911 aa16.57■□□□□ 0.24
HPS4-212ENST00000481910 SCAF11Q99590 1463 aaKnown RBP16.56■□□□□ 0.24
HPS4-212ENST00000481910 NCKAP5LQ9HCH0 1330 aa16.56■□□□□ 0.24
HPS4-212ENST00000481910 MYOM2P54296 1465 aa16.56■□□□□ 0.24
HPS4-212ENST00000481910 ZEB1P37275 1124 aaPredicted RBP16.55■□□□□ 0.24
HPS4-212ENST00000481910 POLR1AO95602 1720 aaPredicted RBP16.53■□□□□ 0.24
HPS4-212ENST00000481910 PLEKHG1Q9ULL1 1385 aa16.53■□□□□ 0.24
HPS4-212ENST00000481910 NBPF8Q3BBV2 869 aa16.53■□□□□ 0.24
HPS4-212ENST00000481910 PRAG1Q86YV5 1406 aa16.52■□□□□ 0.24
HPS4-212ENST00000481910 NRXN1Q9ULB1 1477 aa16.52■□□□□ 0.23
HPS4-212ENST00000481910 PIK3C2GO75747 1445 aa16.51■□□□□ 0.23
HPS4-212ENST00000481910 CFAP70Q5T0N1 1121 aa16.5■□□□□ 0.23
HPS4-212ENST00000481910 NPHP4O75161 1426 aaPredicted RBP16.5■□□□□ 0.23
HPS4-212ENST00000481910 SLC26A8Q96RN1 970 aa16.49■□□□□ 0.23
HPS4-212ENST00000481910 C14orf93Q9H972 538 aaKnown RBP16.49■□□□□ 0.23
HPS4-212ENST00000481910 STRCQ7RTU9 1775 aa16.49■□□□□ 0.23
HPS4-212ENST00000481910 MED14O60244 1454 aa16.49■□□□□ 0.23
HPS4-212ENST00000481910 SETBP1Q9Y6X0 1596 aa16.47■□□□□ 0.23
HPS4-212ENST00000481910 IQGAP1P46940 1657 aa16.47■□□□□ 0.23
HPS4-212ENST00000481910 ALKQ9UM73 1620 aa16.46■□□□□ 0.23
HPS4-212ENST00000481910 NRXN3Q9Y4C0 1643 aa16.46■□□□□ 0.23
HPS4-212ENST00000481910 ADAMTS13Q76LX8 1427 aa16.46■□□□□ 0.23
HPS4-212ENST00000481910 NBPF1Q3BBV0 1214 aa16.45■□□□□ 0.22
HPS4-212ENST00000481910 TBX22Q9Y458 520 aa16.45■□□□□ 0.22
HPS4-212ENST00000481910 DMRT2Q9Y5R5 561 aa16.45■□□□□ 0.22
HPS4-212ENST00000481910 TMEM132EQ6IEE7 984 aa16.44■□□□□ 0.22
HPS4-212ENST00000481910 TRPM1Q7Z4N2 1603 aa16.44■□□□□ 0.22
HPS4-212ENST00000481910 ROCK2O75116 1388 aaKnown RBP16.44■□□□□ 0.22
HPS4-212ENST00000481910 LAMC1P11047 1609 aa16.43■□□□□ 0.22
HPS4-212ENST00000481910 KIAA1210Q9ULL0 1709 aa16.43■□□□□ 0.22
HPS4-212ENST00000481910 METP08581 1390 aa16.42■□□□□ 0.22
HPS4-212ENST00000481910 DIP2AQ14689 1571 aa16.41■□□□□ 0.22
HPS4-212ENST00000481910 RALGAPBQ86X10 1494 aa16.41■□□□□ 0.22
HPS4-212ENST00000481910 CARD11Q9BXL7 1154 aa16.41■□□□□ 0.22
HPS4-212ENST00000481910 SETD1AO15047 1707 aaKnown RBP16.41■□□□□ 0.22
HPS4-212ENST00000481910 STK26Q9P289 416 aa16.39■□□□□ 0.21
HPS4-212ENST00000481910 ADGRB1O14514 1584 aa16.38■□□□□ 0.21
HPS4-212ENST00000481910 ADRA2BP18089 450 aa16.38■□□□□ 0.21
HPS4-212ENST00000481910 PIK3R4Q99570 1358 aa16.37■□□□□ 0.21
HPS4-212ENST00000481910 EIF5BO60841 1220 aaKnown RBP16.37■□□□□ 0.21
HPS4-212ENST00000481910 ASXL1Q8IXJ9 1541 aa16.37■□□□□ 0.21
HPS4-212ENST00000481910 GPRASP1Q5JY77 1395 aa16.37■□□□□ 0.21
HPS4-212ENST00000481910 AMOTL2Q9Y2J4 779 aa16.37■□□□□ 0.21
HPS4-212ENST00000481910 YTHDC2Q9H6S0 1430 aaKnown RBP16.36■□□□□ 0.21
HPS4-212ENST00000481910 TRAK1Q9UPV9 953 aa16.36■□□□□ 0.21
HPS4-212ENST00000481910 PTPRUQ92729 1446 aa16.35■□□□□ 0.21
HPS4-212ENST00000481910 KCNA6P17658 529 aa16.35■□□□□ 0.21
HPS4-212ENST00000481910 CHD2O14647 1828 aaKnown RBP16.34■□□□□ 0.21
HPS4-212ENST00000481910 LRPPRCP42704 1394 aaKnown RBP16.34■□□□□ 0.21
HPS4-212ENST00000481910 ABCC11Q96J66 1382 aa16.33■□□□□ 0.2
HPS4-212ENST00000481910 ZNF335Q9H4Z2 1342 aaPredicted RBP16.32■□□□□ 0.2
HPS4-212ENST00000481910 EIF4G2P78344 907 aaKnown RBP eCLIP16.3■□□□□ 0.2
HPS4-212ENST00000481910 EIF3AQ14152 1382 aaKnown RBP16.29■□□□□ 0.2
HPS4-212ENST00000481910 USP47Q96K76 1375 aa16.29■□□□□ 0.2
HPS4-212ENST00000481910 POGKQ9P215 609 aa16.29■□□□□ 0.2
HPS4-212ENST00000481910 XRN1Q8IZH2 1706 aaKnown RBP16.29■□□□□ 0.2
HPS4-212ENST00000481910 NCBP3Q53F19 620 aaKnown RBP16.29■□□□□ 0.2
HPS4-212ENST00000481910 WAPLQ7Z5K2 1190 aa16.29■□□□□ 0.2
HPS4-212ENST00000481910 SIRT1Q96EB6 747 aa16.29■□□□□ 0.2
HPS4-212ENST00000481910 PRAM1Q96QH2 718 aa16.29■□□□□ 0.2
HPS4-212ENST00000481910 TECPR2O15040 1411 aa16.29■□□□□ 0.2
HPS4-212ENST00000481910 ROBO2Q9HCK4 1378 aa16.28■□□□□ 0.2
HPS4-212ENST00000481910 KNDC1Q76NI1 1749 aa16.28■□□□□ 0.2
HPS4-212ENST00000481910 STRCP1A6NGW2 1772 aa16.28■□□□□ 0.2
HPS4-212ENST00000481910 ST20-MTHFSA0A0A6YYL1 179 aa16.27■□□□□ 0.2
HPS4-212ENST00000481910 SAFB2Q14151 953 aaKnown RBP eCLIP16.27■□□□□ 0.2
HPS4-212ENST00000481910 PROSER2Q86WR7 435 aaPredicted RBP16.27■□□□□ 0.2
HPS4-212ENST00000481910 NWD1Q149M9 1564 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms