RNA–Protein interactions for RNA: ENST00000477299.5

COPS3-207, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 656 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-207ENST00000477299 TXNDC2Q86VQ3 553 aa23.24■■□□□ 1.31
COPS3-207ENST00000477299 ZFYVE9O95405 1425 aa23.23■■□□□ 1.31
COPS3-207ENST00000477299 RIMS2Q9UQ26 1411 aa23.23■■□□□ 1.31
COPS3-207ENST00000477299 ANKLE2Q86XL3 938 aa23.22■■□□□ 1.31
COPS3-207ENST00000477299 PPLO60437 1756 aa23.2■■□□□ 1.3
COPS3-207ENST00000477299 NEXMIFQ5QGS0 1516 aa23.2■■□□□ 1.3
COPS3-207ENST00000477299 NEUROD1Q13562 356 aa23.19■■□□□ 1.3
COPS3-207ENST00000477299 IFT172Q9UG01 1749 aa23.18■■□□□ 1.3
COPS3-207ENST00000477299 SCAF11Q99590 1463 aaKnown RBP23.17■■□□□ 1.3
COPS3-207ENST00000477299 EID1Q9Y6B2 187 aa23.16■■□□□ 1.3
COPS3-207ENST00000477299 ILDR1Q86SU0 546 aaPredicted RBP23.15■■□□□ 1.3
COPS3-207ENST00000477299 IQGAP1P46940 1657 aa23.14■■□□□ 1.29
COPS3-207ENST00000477299 MED14O60244 1454 aa23.13■■□□□ 1.29
COPS3-207ENST00000477299 NPHP4O75161 1426 aaPredicted RBP23.13■■□□□ 1.29
COPS3-207ENST00000477299 PPP1R15AO75807 674 aaPredicted RBP23.12■■□□□ 1.29
COPS3-207ENST00000477299 CCER1Q8TC90 406 aaPredicted RBP23.1■■□□□ 1.29
COPS3-207ENST00000477299 SLC26A8Q96RN1 970 aa23.1■■□□□ 1.29
COPS3-207ENST00000477299 RPGRIP1LQ68CZ1 1315 aa23.09■■□□□ 1.29
COPS3-207ENST00000477299 ADGRF5Q8IZF2 1346 aa23.09■■□□□ 1.29
COPS3-207ENST00000477299 NRXN3Q9Y4C0 1643 aa23.09■■□□□ 1.29
COPS3-207ENST00000477299 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.09■■□□□ 1.29
COPS3-207ENST00000477299 KDM2AQ9Y2K7 1162 aa23.09■■□□□ 1.29
COPS3-207ENST00000477299 HDGFP51858 240 aaKnown RBP23.08■■□□□ 1.29
COPS3-207ENST00000477299 BCANQ96GW7 911 aa23.08■■□□□ 1.29
COPS3-207ENST00000477299 PLEKHG1Q9ULL1 1385 aa23.07■■□□□ 1.28
COPS3-207ENST00000477299 DCAF11Q8TEB1 546 aa23.07■■□□□ 1.28
COPS3-207ENST00000477299 L3MBTL2Q969R5 705 aa23.06■■□□□ 1.28
COPS3-207ENST00000477299 DMRT2Q9Y5R5 561 aa23.05■■□□□ 1.28
COPS3-207ENST00000477299 VGFO15240 615 aaPredicted RBP23.04■■□□□ 1.28
COPS3-207ENST00000477299 ADAMTS13Q76LX8 1427 aa23.04■■□□□ 1.28
COPS3-207ENST00000477299 STRCP1A6NGW2 1772 aa23.04■■□□□ 1.28
COPS3-207ENST00000477299 SETD1AO15047 1707 aaKnown RBP23.01■■□□□ 1.27
COPS3-207ENST00000477299 SETBP1Q9Y6X0 1596 aa23■■□□□ 1.27
COPS3-207ENST00000477299 ZNF335Q9H4Z2 1342 aaPredicted RBP23■■□□□ 1.27
COPS3-207ENST00000477299 MYOM2P54296 1465 aa22.98■■□□□ 1.27
COPS3-207ENST00000477299 NRXN1Q9ULB1 1477 aa22.98■■□□□ 1.27
COPS3-207ENST00000477299 ALKQ9UM73 1620 aa22.97■■□□□ 1.27
COPS3-207ENST00000477299 TBX22Q9Y458 520 aa22.97■■□□□ 1.27
COPS3-207ENST00000477299 CHD2O14647 1828 aaKnown RBP22.96■■□□□ 1.27
COPS3-207ENST00000477299 PIK3C2GO75747 1445 aa22.95■■□□□ 1.26
COPS3-207ENST00000477299 METP08581 1390 aa22.95■■□□□ 1.26
COPS3-207ENST00000477299 CFAP70Q5T0N1 1121 aa22.95■■□□□ 1.26
COPS3-207ENST00000477299 CLSPNQ9HAW4 1339 aa22.94■■□□□ 1.26
COPS3-207ENST00000477299 PTPRUQ92729 1446 aa22.93■■□□□ 1.26
COPS3-207ENST00000477299 TMEM132EQ6IEE7 984 aa22.93■■□□□ 1.26
COPS3-207ENST00000477299 TONSLQ96HA7 1378 aa22.92■■□□□ 1.26
COPS3-207ENST00000477299 LTBP4Q8N2S1 1624 aa22.92■■□□□ 1.26
COPS3-207ENST00000477299 NBPF8Q3BBV2 869 aa22.91■■□□□ 1.26
COPS3-207ENST00000477299 C14orf93Q9H972 538 aaKnown RBP22.91■■□□□ 1.26
COPS3-207ENST00000477299 ASXL1Q8IXJ9 1541 aa22.91■■□□□ 1.26
COPS3-207ENST00000477299 DIP2AQ14689 1571 aa22.9■■□□□ 1.26
COPS3-207ENST00000477299 PRAG1Q86YV5 1406 aa22.89■■□□□ 1.25
COPS3-207ENST00000477299 KCNA6P17658 529 aa22.87■■□□□ 1.25
COPS3-207ENST00000477299 RBM33Q96EV2 1170 aaKnown RBP22.87■■□□□ 1.25
COPS3-207ENST00000477299 NBPF1Q3BBV0 1214 aa22.86■■□□□ 1.25
COPS3-207ENST00000477299 AMOTL2Q9Y2J4 779 aa22.86■■□□□ 1.25
COPS3-207ENST00000477299 XIRP1Q702N8 1843 aaKnown RBP22.86■■□□□ 1.25
COPS3-207ENST00000477299 STAC3Q96MF2 364 aa22.85■■□□□ 1.25
COPS3-207ENST00000477299 NWD1Q149M9 1564 aa22.84■■□□□ 1.25
COPS3-207ENST00000477299 XRN1Q8IZH2 1706 aaKnown RBP22.84■■□□□ 1.25
COPS3-207ENST00000477299 STK26Q9P289 416 aa22.83■■□□□ 1.25
COPS3-207ENST00000477299 LAMC1P11047 1609 aa22.82■■□□□ 1.24
COPS3-207ENST00000477299 TRPM1Q7Z4N2 1603 aa22.82■■□□□ 1.24
COPS3-207ENST00000477299 ADGRB1O14514 1584 aa22.81■■□□□ 1.24
COPS3-207ENST00000477299 KIAA1210Q9ULL0 1709 aa22.81■■□□□ 1.24
COPS3-207ENST00000477299 PIK3R4Q99570 1358 aa22.8■■□□□ 1.24
COPS3-207ENST00000477299 FBXO41Q8TF61 875 aa22.8■■□□□ 1.24
COPS3-207ENST00000477299 LRRC7Q96NW7 1537 aa22.8■■□□□ 1.24
COPS3-207ENST00000477299 PROSER2Q86WR7 435 aaPredicted RBP22.78■■□□□ 1.24
COPS3-207ENST00000477299 YTHDC2Q9H6S0 1430 aaKnown RBP22.78■■□□□ 1.24
COPS3-207ENST00000477299 ROBO2Q9HCK4 1378 aa22.76■■□□□ 1.23
COPS3-207ENST00000477299 CPS1P31327 1500 aa22.76■■□□□ 1.23
COPS3-207ENST00000477299 LRPPRCP42704 1394 aaKnown RBP22.76■■□□□ 1.23
COPS3-207ENST00000477299 CERKQ8TCT0 537 aa22.75■■□□□ 1.23
COPS3-207ENST00000477299 WAPLQ7Z5K2 1190 aa22.74■■□□□ 1.23
COPS3-207ENST00000477299 TIMELESSQ9UNS1 1208 aa22.74■■□□□ 1.23
COPS3-207ENST00000477299 TRAK1Q9UPV9 953 aa22.74■■□□□ 1.23
COPS3-207ENST00000477299 TMEM94Q12767 1356 aa22.74■■□□□ 1.23
COPS3-207ENST00000477299 KNDC1Q76NI1 1749 aa22.74■■□□□ 1.23
COPS3-207ENST00000477299 NKTRP30414 1462 aaKnown RBP22.73■■□□□ 1.23
COPS3-207ENST00000477299 PLEKHH1Q9ULM0 1364 aa22.73■■□□□ 1.23
COPS3-207ENST00000477299 ABCC11Q96J66 1382 aa22.72■■□□□ 1.23
COPS3-207ENST00000477299 ARHGEF28Q8N1W1 1705 aaKnown RBP22.7■■□□□ 1.22
COPS3-207ENST00000477299 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.69■■□□□ 1.22
COPS3-207ENST00000477299 TECPR2O15040 1411 aa22.69■■□□□ 1.22
COPS3-207ENST00000477299 SAFB2Q14151 953 aaKnown RBP eCLIP22.68■■□□□ 1.22
COPS3-207ENST00000477299 RALGAPBQ86X10 1494 aa22.67■■□□□ 1.22
COPS3-207ENST00000477299 ROCK2O75116 1388 aaKnown RBP22.67■■□□□ 1.22
COPS3-207ENST00000477299 NALCNQ8IZF0 1738 aa22.67■■□□□ 1.22
COPS3-207ENST00000477299 PTCH1Q13635 1447 aa22.66■■□□□ 1.22
COPS3-207ENST00000477299 PRAM1Q96QH2 718 aa22.66■■□□□ 1.22
COPS3-207ENST00000477299 GPRASP1Q5JY77 1395 aa22.63■■□□□ 1.21
COPS3-207ENST00000477299 DLC1Q96QB1 1528 aa22.63■■□□□ 1.21
COPS3-207ENST00000477299 C14orf37Q86TY3 774 aa22.63■■□□□ 1.21
COPS3-207ENST00000477299 CARD11Q9BXL7 1154 aa22.62■■□□□ 1.21
COPS3-207ENST00000477299 SIRT1Q96EB6 747 aa22.61■■□□□ 1.21
COPS3-207ENST00000477299 FAM135BQ49AJ0 1406 aa22.6■■□□□ 1.21
COPS3-207ENST00000477299 POGKQ9P215 609 aa22.6■■□□□ 1.21
COPS3-207ENST00000477299 HIRIP3Q9BW71 556 aaPredicted RBP22.58■■□□□ 1.21
COPS3-207ENST00000477299 MINK1Q8N4C8 1332 aaPredicted RBP22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms