RNA–Protein interactions for RNA: ENST00000475657.1

FAM3A-218, Transcript of family with sequence similarity 3 member A, humanhuman

TSL 2

Gene FAM3A, Length 585 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FAM3A-218ENST00000475657 NOS1P29475 1434 aa22.11■■□□□ 1.13
FAM3A-218ENST00000475657 TRIM52Q96A61 297 aa22.1■■□□□ 1.13
FAM3A-218ENST00000475657 RXRBP28702 533 aa22.09■■□□□ 1.13
FAM3A-218ENST00000475657 BCANQ96GW7 911 aa22.09■■□□□ 1.13
FAM3A-218ENST00000475657 CDK12Q9NYV4 1490 aaPredicted RBP22.09■■□□□ 1.13
FAM3A-218ENST00000475657 ADGRB3O60242 1522 aa22.08■■□□□ 1.13
FAM3A-218ENST00000475657 ABCC5O15440 1437 aa22.07■■□□□ 1.12
FAM3A-218ENST00000475657 PLEKHG1Q9ULL1 1385 aa22.07■■□□□ 1.12
FAM3A-218ENST00000475657 HDGFP51858 240 aaKnown RBP22.06■■□□□ 1.12
FAM3A-218ENST00000475657 CADPS2Q86UW7 1296 aa22.06■■□□□ 1.12
FAM3A-218ENST00000475657 TBX22Q9Y458 520 aa22.05■■□□□ 1.12
FAM3A-218ENST00000475657 KANK4Q5T7N3 995 aaPredicted RBP22.04■■□□□ 1.12
FAM3A-218ENST00000475657 AHDC1Q5TGY3 1603 aaPredicted RBP22.04■■□□□ 1.12
FAM3A-218ENST00000475657 C19orf44Q9H6X5 657 aa22.03■■□□□ 1.12
FAM3A-218ENST00000475657 ZFYVE9O95405 1425 aa22.03■■□□□ 1.12
FAM3A-218ENST00000475657 CHD2O14647 1828 aaKnown RBP22.03■■□□□ 1.12
FAM3A-218ENST00000475657 SRCAPQ6ZRS2 3230 aa22.02■■□□□ 1.12
FAM3A-218ENST00000475657 SHPRHQ149N8 1683 aa22.01■■□□□ 1.11
FAM3A-218ENST00000475657 VPS8Q8N3P4 1428 aa22.01■■□□□ 1.11
FAM3A-218ENST00000475657 ATF3P18847 181 aa21.99■■□□□ 1.11
FAM3A-218ENST00000475657 C14orf37Q86TY3 774 aa21.99■■□□□ 1.11
FAM3A-218ENST00000475657 PPP1R15AO75807 674 aaPredicted RBP21.98■■□□□ 1.11
FAM3A-218ENST00000475657 ANKRD30AQ9BXX3 1397 aa21.98■■□□□ 1.11
FAM3A-218ENST00000475657 CROCC2H7BZ55 1655 aa21.98■■□□□ 1.11
FAM3A-218ENST00000475657 DAPK1P53355 1430 aa21.97■■□□□ 1.11
FAM3A-218ENST00000475657 RPRD2Q5VT52 1461 aaKnown RBP21.97■■□□□ 1.11
FAM3A-218ENST00000475657 PIK3R4Q99570 1358 aa21.97■■□□□ 1.11
FAM3A-218ENST00000475657 RIMS2Q9UQ26 1411 aa21.97■■□□□ 1.11
FAM3A-218ENST00000475657 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.96■■□□□ 1.11
FAM3A-218ENST00000475657 BRINP3Q76B58 766 aa21.94■■□□□ 1.1
FAM3A-218ENST00000475657 AFF2P51816 1311 aa21.94■■□□□ 1.1
FAM3A-218ENST00000475657 DIP2AQ14689 1571 aa21.93■■□□□ 1.1
FAM3A-218ENST00000475657 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.92■■□□□ 1.1
FAM3A-218ENST00000475657 NUTM2BA6NNL0 878 aaPredicted RBP21.92■■□□□ 1.1
FAM3A-218ENST00000475657 NUTM2EB1AL46 878 aaPredicted RBP21.92■■□□□ 1.1
FAM3A-218ENST00000475657 NUTM2AQ8IVF1 878 aaPredicted RBP21.92■■□□□ 1.1
FAM3A-218ENST00000475657 ADAMTS13Q76LX8 1427 aa21.91■■□□□ 1.1
FAM3A-218ENST00000475657 SETD5Q9C0A6 1442 aa21.91■■□□□ 1.1
FAM3A-218ENST00000475657 RBM6P78332 1123 aaKnown RBP21.91■■□□□ 1.1
FAM3A-218ENST00000475657 PTPN23Q9H3S7 1636 aa21.91■■□□□ 1.1
FAM3A-218ENST00000475657 DCCP43146 1447 aa21.89■■□□□ 1.09
FAM3A-218ENST00000475657 TMEM131LA2VDJ0 1609 aa21.88■■□□□ 1.09
FAM3A-218ENST00000475657 CHIC2Q9UKJ5 165 aa21.88■■□□□ 1.09
FAM3A-218ENST00000475657 LOC105371045A0A1W2PR82 267 aa21.87■■□□□ 1.09
FAM3A-218ENST00000475657 LRRC59Q96AG4 307 aaKnown RBP21.87■■□□□ 1.09
FAM3A-218ENST00000475657 QTRT2Q9H974 415 aaKnown RBP21.87■■□□□ 1.09
FAM3A-218ENST00000475657 RGS12O14924 1447 aa21.87■■□□□ 1.09
FAM3A-218ENST00000475657 AMOTL2Q9Y2J4 779 aa21.85■■□□□ 1.09
FAM3A-218ENST00000475657 MYO5BQ9ULV0 1848 aa21.83■■□□□ 1.09
FAM3A-218ENST00000475657 FOXD1Q16676 465 aa21.83■■□□□ 1.09
FAM3A-218ENST00000475657 ASXL1Q8IXJ9 1541 aa21.83■■□□□ 1.09
FAM3A-218ENST00000475657 ADGRL2O95490 1459 aa21.83■■□□□ 1.08
FAM3A-218ENST00000475657 GCC2Q8IWJ2 1684 aa21.82■■□□□ 1.08
FAM3A-218ENST00000475657 NUTM2DQ5VT03 806 aaPredicted RBP21.81■■□□□ 1.08
FAM3A-218ENST00000475657 NGLY1Q96IV0 654 aa21.81■■□□□ 1.08
FAM3A-218ENST00000475657 C8orf37Q96NL8 207 aa21.81■■□□□ 1.08
FAM3A-218ENST00000475657 TRPM2O94759 1503 aa21.8■■□□□ 1.08
FAM3A-218ENST00000475657 MST1RQ04912 1400 aa21.8■■□□□ 1.08
FAM3A-218ENST00000475657 PTPRUQ92729 1446 aa21.8■■□□□ 1.08
FAM3A-218ENST00000475657 ANKRD50Q9ULJ7 1429 aa21.8■■□□□ 1.08
FAM3A-218ENST00000475657 ATAD2Q6PL18 1390 aa21.79■■□□□ 1.08
FAM3A-218ENST00000475657 CHGAP10645 457 aaKnown RBP21.79■■□□□ 1.08
FAM3A-218ENST00000475657 PNPLA6Q8IY17 1366 aa21.78■■□□□ 1.08
FAM3A-218ENST00000475657 NHSL1Q5SYE7 1610 aa21.77■■□□□ 1.07
FAM3A-218ENST00000475657 ZRANB1Q9UGI0 708 aa21.76■■□□□ 1.07
FAM3A-218ENST00000475657 APLP2Q06481 763 aa21.73■■□□□ 1.07
FAM3A-218ENST00000475657 CCDC125Q86Z20 511 aa21.71■■□□□ 1.07
FAM3A-218ENST00000475657 UNC13BO14795 1591 aa21.7■■□□□ 1.06
FAM3A-218ENST00000475657 TRPC5Q9UL62 973 aaPredicted RBP21.7■■□□□ 1.06
FAM3A-218ENST00000475657 XRN1Q8IZH2 1706 aaKnown RBP21.69■■□□□ 1.06
FAM3A-218ENST00000475657 ADAMTS2O95450 1211 aa21.69■■□□□ 1.06
FAM3A-218ENST00000475657 FNBP4Q8N3X1 1017 aaPredicted RBP21.68■■□□□ 1.06
FAM3A-218ENST00000475657 DDX17Q92841 729 aaKnown RBP21.68■■□□□ 1.06
FAM3A-218ENST00000475657 USP21Q9UK80 565 aa21.68■■□□□ 1.06
FAM3A-218ENST00000475657 ADGRL3Q9HAR2 1447 aa21.68■■□□□ 1.06
FAM3A-218ENST00000475657 SETBP1Q9Y6X0 1596 aa21.66■■□□□ 1.06
FAM3A-218ENST00000475657 PTCH1Q13635 1447 aa21.64■■□□□ 1.06
FAM3A-218ENST00000475657 SOS2Q07890 1332 aaPredicted RBP21.64■■□□□ 1.05
FAM3A-218ENST00000475657 METP08581 1390 aa21.63■■□□□ 1.05
FAM3A-218ENST00000475657 E9PCH4 1651 aa21.63■■□□□ 1.05
FAM3A-218ENST00000475657 NRXN3Q9Y4C0 1643 aa21.63■■□□□ 1.05
FAM3A-218ENST00000475657 C1orf167Q5SNV9 1468 aa21.62■■□□□ 1.05
FAM3A-218ENST00000475657 ATRNO75882 1429 aa21.62■■□□□ 1.05
FAM3A-218ENST00000475657 EP400Q96L91 3159 aa21.62■■□□□ 1.05
FAM3A-218ENST00000475657 LAMC1P11047 1609 aa21.62■■□□□ 1.05
FAM3A-218ENST00000475657 FAM50AQ14320 339 aaKnown RBP21.6■■□□□ 1.05
FAM3A-218ENST00000475657 IQGAP3Q86VI3 1631 aa21.57■■□□□ 1.04
FAM3A-218ENST00000475657 NUP155O75694 1391 aa21.54■■□□□ 1.04
FAM3A-218ENST00000475657 ROCK1Q13464 1354 aa21.54■■□□□ 1.04
FAM3A-218ENST00000475657 ORAI2Q96SN7 254 aa21.54■■□□□ 1.04
FAM3A-218ENST00000475657 NALCNQ8IZF0 1738 aa21.53■■□□□ 1.04
FAM3A-218ENST00000475657 BCL9LQ86UU0 1499 aa21.52■■□□□ 1.04
FAM3A-218ENST00000475657 ZNF326Q5BKZ1 582 aaKnown RBP21.52■■□□□ 1.04
FAM3A-218ENST00000475657 GJD4Q96KN9 370 aaPredicted RBP21.52■■□□□ 1.04
FAM3A-218ENST00000475657 MYOM2P54296 1465 aa21.51■■□□□ 1.03
FAM3A-218ENST00000475657 COL22A1Q8NFW1 1626 aaPredicted RBP21.51■■□□□ 1.03
FAM3A-218ENST00000475657 BLMP54132 1417 aaPredicted RBP21.49■■□□□ 1.03
FAM3A-218ENST00000475657 PRAG1Q86YV5 1406 aa21.47■■□□□ 1.03
FAM3A-218ENST00000475657 NPHP3Q7Z494 1330 aa21.46■■□□□ 1.03
FAM3A-218ENST00000475657 ROBO2Q9HCK4 1378 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms