RNA–Protein interactions for RNA: ENST00000474647.1

CCDC78-209, Transcript of coiled-coil domain containing 78, humanhuman

TSL 3

Gene CCDC78, Length 506 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-209ENST00000474647 RPRD2Q5VT52 1461 aaKnown RBP21.77■■□□□ 1.08
CCDC78-209ENST00000474647 E9PCH4 1651 aa21.77■■□□□ 1.08
CCDC78-209ENST00000474647 RBM33Q96EV2 1170 aaKnown RBP21.77■■□□□ 1.08
CCDC78-209ENST00000474647 BCANQ96GW7 911 aa21.77■■□□□ 1.08
CCDC78-209ENST00000474647 TMEM131LA2VDJ0 1609 aa21.77■■□□□ 1.07
CCDC78-209ENST00000474647 FAM135BQ49AJ0 1406 aa21.75■■□□□ 1.07
CCDC78-209ENST00000474647 ANKRD50Q9ULJ7 1429 aa21.75■■□□□ 1.07
CCDC78-209ENST00000474647 KCNA6P17658 529 aa21.75■■□□□ 1.07
CCDC78-209ENST00000474647 PROSER2Q86WR7 435 aaPredicted RBP21.75■■□□□ 1.07
CCDC78-209ENST00000474647 SLC52A1Q9NWF4 448 aa21.72■■□□□ 1.07
CCDC78-209ENST00000474647 MSH6P52701 1360 aa21.7■■□□□ 1.06
CCDC78-209ENST00000474647 ZFYVE9O95405 1425 aa21.7■■□□□ 1.06
CCDC78-209ENST00000474647 IQGAP3Q86VI3 1631 aa21.69■■□□□ 1.06
CCDC78-209ENST00000474647 SETD1AO15047 1707 aaKnown RBP21.69■■□□□ 1.06
CCDC78-209ENST00000474647 PPP1R15AO75807 674 aaPredicted RBP21.69■■□□□ 1.06
CCDC78-209ENST00000474647 RGS17Q9UGC6 210 aaPredicted RBP21.69■■□□□ 1.06
CCDC78-209ENST00000474647 RIMS2Q9UQ26 1411 aa21.69■■□□□ 1.06
CCDC78-209ENST00000474647 PLEKHG1Q9ULL1 1385 aa21.67■■□□□ 1.06
CCDC78-209ENST00000474647 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.66■■□□□ 1.06
CCDC78-209ENST00000474647 CHGAP10645 457 aaKnown RBP21.64■■□□□ 1.05
CCDC78-209ENST00000474647 DIP2AQ14689 1571 aa21.64■■□□□ 1.05
CCDC78-209ENST00000474647 COL16A1Q07092 1604 aaPredicted RBP21.63■■□□□ 1.05
CCDC78-209ENST00000474647 SPHKAPQ2M3C7 1700 aa21.63■■□□□ 1.05
CCDC78-209ENST00000474647 HDGFP51858 240 aaKnown RBP21.6■■□□□ 1.05
CCDC78-209ENST00000474647 NUTM2DQ5VT03 806 aaPredicted RBP21.59■■□□□ 1.05
CCDC78-209ENST00000474647 SLAIN2Q9P270 581 aa21.59■■□□□ 1.05
CCDC78-209ENST00000474647 POTEAQ6S8J7 498 aa21.58■■□□□ 1.05
CCDC78-209ENST00000474647 C14orf37Q86TY3 774 aa21.58■■□□□ 1.05
CCDC78-209ENST00000474647 TRPM2O94759 1503 aa21.58■■□□□ 1.04
CCDC78-209ENST00000474647 SHPRHQ149N8 1683 aa21.57■■□□□ 1.04
CCDC78-209ENST00000474647 ADAMTS13Q76LX8 1427 aa21.55■■□□□ 1.04
CCDC78-209ENST00000474647 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.55■■□□□ 1.04
CCDC78-209ENST00000474647 JCADQ9P266 1359 aa21.55■■□□□ 1.04
CCDC78-209ENST00000474647 ROCK1Q13464 1354 aa21.54■■□□□ 1.04
CCDC78-209ENST00000474647 TBX22Q9Y458 520 aa21.53■■□□□ 1.04
CCDC78-209ENST00000474647 AHDC1Q5TGY3 1603 aaPredicted RBP21.53■■□□□ 1.04
CCDC78-209ENST00000474647 NRXN3Q9Y4C0 1643 aa21.53■■□□□ 1.04
CCDC78-209ENST00000474647 ITGAEP38570 1179 aa21.52■■□□□ 1.04
CCDC78-209ENST00000474647 XRN1Q8IZH2 1706 aaKnown RBP21.52■■□□□ 1.03
CCDC78-209ENST00000474647 KIF1BO60333 1816 aa21.51■■□□□ 1.03
CCDC78-209ENST00000474647 NCOA3Q9Y6Q9 1424 aa21.51■■□□□ 1.03
CCDC78-209ENST00000474647 NUP155O75694 1391 aa21.5■■□□□ 1.03
CCDC78-209ENST00000474647 LRP6O75581 1613 aa21.49■■□□□ 1.03
CCDC78-209ENST00000474647 PIK3R4Q99570 1358 aa21.48■■□□□ 1.03
CCDC78-209ENST00000474647 ATF3P18847 181 aa21.47■■□□□ 1.03
CCDC78-209ENST00000474647 SETBP1Q9Y6X0 1596 aa21.46■■□□□ 1.03
CCDC78-209ENST00000474647 CADPS2Q86UW7 1296 aa21.46■■□□□ 1.03
CCDC78-209ENST00000474647 NHSL1Q5SYE7 1610 aa21.46■■□□□ 1.03
CCDC78-209ENST00000474647 NALCNQ8IZF0 1738 aa21.46■■□□□ 1.03
CCDC78-209ENST00000474647 PTPRUQ92729 1446 aa21.46■■□□□ 1.03
CCDC78-209ENST00000474647 CLTCL1P53675 1640 aa21.45■■□□□ 1.02
CCDC78-209ENST00000474647 MEX3CQ5U5Q3 659 aaKnown RBP21.45■■□□□ 1.02
CCDC78-209ENST00000474647 C19orf44Q9H6X5 657 aa21.44■■□□□ 1.02
CCDC78-209ENST00000474647 AMOTL2Q9Y2J4 779 aa21.43■■□□□ 1.02
CCDC78-209ENST00000474647 SPATA31A6Q5VVP1 1343 aa21.42■■□□□ 1.02
CCDC78-209ENST00000474647 PPARGC1BQ86YN6 1023 aaKnown RBP21.42■■□□□ 1.02
CCDC78-209ENST00000474647 ASXL1Q8IXJ9 1541 aa21.41■■□□□ 1.02
CCDC78-209ENST00000474647 ZNF326Q5BKZ1 582 aaKnown RBP21.4■■□□□ 1.02
CCDC78-209ENST00000474647 DCCP43146 1447 aa21.39■■□□□ 1.02
CCDC78-209ENST00000474647 NEXMIFQ5QGS0 1516 aa21.39■■□□□ 1.01
CCDC78-209ENST00000474647 BRINP3Q76B58 766 aa21.37■■□□□ 1.01
CCDC78-209ENST00000474647 ZNF772Q68DY9 489 aaPredicted RBP21.35■■□□□ 1.01
CCDC78-209ENST00000474647 TRIM52Q96A61 297 aa21.35■■□□□ 1.01
CCDC78-209ENST00000474647 MST1RQ04912 1400 aa21.35■■□□□ 1.01
CCDC78-209ENST00000474647 NUTM2BA6NNL0 878 aaPredicted RBP21.34■■□□□ 1.01
CCDC78-209ENST00000474647 NUTM2EB1AL46 878 aaPredicted RBP21.34■■□□□ 1.01
CCDC78-209ENST00000474647 NUTM2AQ8IVF1 878 aaPredicted RBP21.34■■□□□ 1.01
CCDC78-209ENST00000474647 METP08581 1390 aa21.34■■□□□ 1.01
CCDC78-209ENST00000474647 ADGRL3Q9HAR2 1447 aa21.31■■□□□ 1
CCDC78-209ENST00000474647 PPLO60437 1756 aa21.31■■□□□ 1
CCDC78-209ENST00000474647 SETD5Q9C0A6 1442 aa21.29■■□□□ 1
CCDC78-209ENST00000474647 RXRBP28702 533 aa21.25■□□□□ 0.99
CCDC78-209ENST00000474647 LAMC1P11047 1609 aa21.25■□□□□ 0.99
CCDC78-209ENST00000474647 AFF2P51816 1311 aa21.25■□□□□ 0.99
CCDC78-209ENST00000474647 DDX17Q92841 729 aaKnown RBP21.24■□□□□ 0.99
CCDC78-209ENST00000474647 NAIPQ13075 1403 aa21.23■□□□□ 0.99
CCDC78-209ENST00000474647 RRBP1Q9P2E9 1410 aaKnown RBP21.22■□□□□ 0.99
CCDC78-209ENST00000474647 CDK12Q9NYV4 1490 aaPredicted RBP21.22■□□□□ 0.99
CCDC78-209ENST00000474647 UPF1Q92900 1129 aaKnown RBP eCLIP21.22■□□□□ 0.99
CCDC78-209ENST00000474647 LRRC59Q96AG4 307 aaKnown RBP21.22■□□□□ 0.99
CCDC78-209ENST00000474647 PNPLA6Q8IY17 1366 aa21.22■□□□□ 0.99
CCDC78-209ENST00000474647 C8orf37Q96NL8 207 aa21.21■□□□□ 0.99
CCDC78-209ENST00000474647 PTCH1Q13635 1447 aa21.21■□□□□ 0.99
CCDC78-209ENST00000474647 MARF1Q9Y4F3 1742 aaKnown RBP21.2■□□□□ 0.98
CCDC78-209ENST00000474647 C1orf167Q5SNV9 1468 aa21.2■□□□□ 0.98
CCDC78-209ENST00000474647 RGS12O14924 1447 aa21.17■□□□□ 0.98
CCDC78-209ENST00000474647 IFT172Q9UG01 1749 aa21.17■□□□□ 0.98
CCDC78-209ENST00000474647 ROBO2Q9HCK4 1378 aa21.16■□□□□ 0.98
CCDC78-209ENST00000474647 COL22A1Q8NFW1 1626 aaPredicted RBP21.15■□□□□ 0.98
CCDC78-209ENST00000474647 VGFO15240 615 aaPredicted RBP21.14■□□□□ 0.97
CCDC78-209ENST00000474647 ADAMTS2O95450 1211 aa21.13■□□□□ 0.97
CCDC78-209ENST00000474647 HFM1A2PYH4 1435 aa21.12■□□□□ 0.97
CCDC78-209ENST00000474647 CDC42BPGQ6DT37 1551 aa21.12■□□□□ 0.97
CCDC78-209ENST00000474647 ORAI2Q96SN7 254 aa21.11■□□□□ 0.97
CCDC78-209ENST00000474647 QTRT2Q9H974 415 aaKnown RBP21.11■□□□□ 0.97
CCDC78-209ENST00000474647 KNDC1Q76NI1 1749 aa21.1■□□□□ 0.97
CCDC78-209ENST00000474647 RBM6P78332 1123 aaKnown RBP21.1■□□□□ 0.97
CCDC78-209ENST00000474647 NGLY1Q96IV0 654 aa21.1■□□□□ 0.97
CCDC78-209ENST00000474647 SLC4A1APQ9BWU0 796 aaKnown RBP21.1■□□□□ 0.97
CCDC78-209ENST00000474647 PRAG1Q86YV5 1406 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms