RNA–Protein interactions for RNA: ENST00000473916.1

VARS2-206, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 2,000 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-206ENST00000473916 STAC3Q96MF2 364 aa24.99■■□□□ 1.59
VARS2-206ENST00000473916 FBXO31Q5XUX0 539 aaPredicted RBP24.98■■□□□ 1.59
VARS2-206ENST00000473916 TESK2Q96S53 571 aa24.98■■□□□ 1.59
VARS2-206ENST00000473916 NRXN1Q9ULB1 1477 aa24.98■■□□□ 1.59
VARS2-206ENST00000473916 CCER2I3L3R5 266 aa24.97■■□□□ 1.59
VARS2-206ENST00000473916 CFAP70Q5T0N1 1121 aa24.97■■□□□ 1.59
VARS2-206ENST00000473916 ARID4BQ4LE39 1312 aaPredicted RBP24.97■■□□□ 1.59
VARS2-206ENST00000473916 IDI1Q13907 227 aa24.96■■□□□ 1.59
VARS2-206ENST00000473916 DISP3Q9P2K9 1392 aa24.95■■□□□ 1.59
VARS2-206ENST00000473916 ERVK-7P63135 1459 aa24.93■■□□□ 1.58
VARS2-206ENST00000473916 NUTM2DQ5VT03 806 aaPredicted RBP24.93■■□□□ 1.58
VARS2-206ENST00000473916 SCAF11Q99590 1463 aaKnown RBP24.92■■□□□ 1.58
VARS2-206ENST00000473916 NEXMIFQ5QGS0 1516 aa24.92■■□□□ 1.58
VARS2-206ENST00000473916 TRHP20396 242 aaPredicted RBP24.91■■□□□ 1.58
VARS2-206ENST00000473916 TMEM131LA2VDJ0 1609 aa24.9■■□□□ 1.58
VARS2-206ENST00000473916 PRKRIP1Q9H875 184 aaPredicted RBP24.9■■□□□ 1.58
VARS2-206ENST00000473916 PIK3C2GO75747 1445 aa24.89■■□□□ 1.58
VARS2-206ENST00000473916 CNGB1Q14028 1251 aaPredicted RBP24.89■■□□□ 1.57
VARS2-206ENST00000473916 SCAF1Q9H7N4 1312 aaKnown RBP24.87■■□□□ 1.57
VARS2-206ENST00000473916 CCDC184Q52MB2 194 aa24.87■■□□□ 1.57
VARS2-206ENST00000473916 SLC52A1Q9NWF4 448 aa24.86■■□□□ 1.57
VARS2-206ENST00000473916 PPP6R1Q9UPN7 881 aa24.86■■□□□ 1.57
VARS2-206ENST00000473916 RPGRIP1LQ68CZ1 1315 aa24.85■■□□□ 1.57
VARS2-206ENST00000473916 SPATA31D1Q6ZQQ2 1576 aa24.83■■□□□ 1.57
VARS2-206ENST00000473916 SENP3Q9H4L4 574 aaPredicted RBP24.83■■□□□ 1.57
VARS2-206ENST00000473916 SETBP1Q9Y6X0 1596 aa24.82■■□□□ 1.56
VARS2-206ENST00000473916 TMF1P82094 1093 aa24.81■■□□□ 1.56
VARS2-206ENST00000473916 ADGRB1O14514 1584 aa24.81■■□□□ 1.56
VARS2-206ENST00000473916 C14orf93Q9H972 538 aaKnown RBP24.8■■□□□ 1.56
VARS2-206ENST00000473916 TMEM132EQ6IEE7 984 aa24.79■■□□□ 1.56
VARS2-206ENST00000473916 EIF3AQ14152 1382 aaKnown RBP24.78■■□□□ 1.56
VARS2-206ENST00000473916 ZMYM3Q14202 1370 aa24.77■■□□□ 1.56
VARS2-206ENST00000473916 VGFO15240 615 aaPredicted RBP24.76■■□□□ 1.55
VARS2-206ENST00000473916 MYO3AQ8NEV4 1616 aa24.76■■□□□ 1.55
VARS2-206ENST00000473916 ESF1Q9H501 851 aaKnown RBP24.74■■□□□ 1.55
VARS2-206ENST00000473916 TRAK1Q9UPV9 953 aa24.73■■□□□ 1.55
VARS2-206ENST00000473916 MYOM1P52179 1685 aa24.73■■□□□ 1.55
VARS2-206ENST00000473916 A2ML1A8K2U0 1454 aa24.71■■□□□ 1.55
VARS2-206ENST00000473916 ZFYVE9O95405 1425 aa24.71■■□□□ 1.55
VARS2-206ENST00000473916 DNAJC5Q9H3Z4 198 aa24.71■■□□□ 1.55
VARS2-206ENST00000473916 STAG3Q9UJ98 1225 aa24.71■■□□□ 1.55
VARS2-206ENST00000473916 QRICH2Q9H0J4 1663 aa24.71■■□□□ 1.55
VARS2-206ENST00000473916 ASXL1Q8IXJ9 1541 aa24.7■■□□□ 1.55
VARS2-206ENST00000473916 MRS2Q9HD23 443 aa24.7■■□□□ 1.54
VARS2-206ENST00000473916 GTF3C3Q9Y5Q9 886 aa24.7■■□□□ 1.54
VARS2-206ENST00000473916 KDM5AP29375 1690 aaKnown RBP24.7■■□□□ 1.54
VARS2-206ENST00000473916 PANK3Q9H999 370 aa24.69■■□□□ 1.54
VARS2-206ENST00000473916 ARHGEF28Q8N1W1 1705 aaKnown RBP24.69■■□□□ 1.54
VARS2-206ENST00000473916 PER1O15534 1290 aaPredicted RBP24.69■■□□□ 1.54
VARS2-206ENST00000473916 CENPJQ9HC77 1338 aaPredicted RBP24.66■■□□□ 1.54
VARS2-206ENST00000473916 FER1L4A9Z1Z3 1794 aa24.63■■□□□ 1.53
VARS2-206ENST00000473916 FAM9BQ8IZU0 186 aa24.62■■□□□ 1.53
VARS2-206ENST00000473916 TNRQ92752 1358 aa24.62■■□□□ 1.53
VARS2-206ENST00000473916 CEBPAP49715 358 aaPredicted RBP24.62■■□□□ 1.53
VARS2-206ENST00000473916 RIMS2Q9UQ26 1411 aa24.62■■□□□ 1.53
VARS2-206ENST00000473916 ALKQ9UM73 1620 aa24.61■■□□□ 1.53
VARS2-206ENST00000473916 SBNO2Q9Y2G9 1366 aa24.6■■□□□ 1.53
VARS2-206ENST00000473916 C3P01024 1663 aa24.6■■□□□ 1.53
VARS2-206ENST00000473916 CDCA8Q53HL2 280 aa24.6■■□□□ 1.53
VARS2-206ENST00000473916 CC2D1BQ5T0F9 858 aaKnown RBP24.59■■□□□ 1.53
VARS2-206ENST00000473916 STK26Q9P289 416 aa24.59■■□□□ 1.53
VARS2-206ENST00000473916 UBR1Q8IWV7 1749 aa24.58■■□□□ 1.53
VARS2-206ENST00000473916 KTN1Q86UP2 1357 aaKnown RBP24.58■■□□□ 1.53
VARS2-206ENST00000473916 PARD3Q8TEW0 1356 aa24.58■■□□□ 1.53
VARS2-206ENST00000473916 HNRNPUQ00839 825 aaKnown RBP eCLIP24.57■■□□□ 1.52
VARS2-206ENST00000473916 SETD1AO15047 1707 aaKnown RBP24.57■■□□□ 1.52
VARS2-206ENST00000473916 PLPPR3Q6T4P5 718 aa24.57■■□□□ 1.52
VARS2-206ENST00000473916 PTPRMP28827 1452 aa24.56■■□□□ 1.52
VARS2-206ENST00000473916 MYBBP1AQ9BQG0 1328 aaKnown RBP24.55■■□□□ 1.52
VARS2-206ENST00000473916 RALBP1Q15311 655 aa24.55■■□□□ 1.52
VARS2-206ENST00000473916 NRXN3Q9Y4C0 1643 aa24.55■■□□□ 1.52
VARS2-206ENST00000473916 SAFB2Q14151 953 aaKnown RBP eCLIP24.54■■□□□ 1.52
VARS2-206ENST00000473916 TULP4Q9NRJ4 1543 aa24.53■■□□□ 1.52
VARS2-206ENST00000473916 YTHDC2Q9H6S0 1430 aaKnown RBP24.53■■□□□ 1.52
VARS2-206ENST00000473916 SLC24A1O60721 1099 aa24.49■■□□□ 1.51
VARS2-206ENST00000473916 TMC1Q8TDI8 760 aa24.49■■□□□ 1.51
VARS2-206ENST00000473916 KNSTRNQ9Y448 316 aa24.48■■□□□ 1.51
VARS2-206ENST00000473916 AMER1Q5JTC6 1135 aaPredicted RBP24.47■■□□□ 1.51
VARS2-206ENST00000473916 BRD4O60885 1362 aaPredicted RBP24.47■■□□□ 1.51
VARS2-206ENST00000473916 PRAM1Q96QH2 718 aa24.46■■□□□ 1.51
VARS2-206ENST00000473916 PNISRQ8TF01 805 aaKnown RBP24.45■■□□□ 1.51
VARS2-206ENST00000473916 CARD14Q9BXL6 1004 aa24.45■■□□□ 1.51
VARS2-206ENST00000473916 TMEM2Q9UHN6 1383 aa24.45■■□□□ 1.5
VARS2-206ENST00000473916 NLRP1Q9C000 1473 aa24.44■■□□□ 1.5
VARS2-206ENST00000473916 NLRP13Q86W25 1043 aa24.43■■□□□ 1.5
VARS2-206ENST00000473916 SLC12A5Q9H2X9 1139 aa24.43■■□□□ 1.5
VARS2-206ENST00000473916 RIMS1Q86UR5 1692 aaKnown RBP24.42■■□□□ 1.5
VARS2-206ENST00000473916 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.42■■□□□ 1.5
VARS2-206ENST00000473916 MINK1Q8N4C8 1332 aaPredicted RBP24.42■■□□□ 1.5
VARS2-206ENST00000473916 METP08581 1390 aa24.42■■□□□ 1.5
VARS2-206ENST00000473916 CABP2Q9NPB3 220 aa24.42■■□□□ 1.5
VARS2-206ENST00000473916 EVC2Q86UK5 1308 aa24.42■■□□□ 1.5
VARS2-206ENST00000473916 SENP3-EIF4A1A0A087X0R7 540 aa24.41■■□□□ 1.5
VARS2-206ENST00000473916 POGKQ9P215 609 aa24.39■■□□□ 1.5
VARS2-206ENST00000473916 PLEKHH1Q9ULM0 1364 aa24.39■■□□□ 1.49
VARS2-206ENST00000473916 LTKP29376 864 aa24.39■■□□□ 1.49
VARS2-206ENST00000473916 LRPPRCP42704 1394 aaKnown RBP24.38■■□□□ 1.49
VARS2-206ENST00000473916 WAPLQ7Z5K2 1190 aa24.37■■□□□ 1.49
VARS2-206ENST00000473916 DLC1Q96QB1 1528 aa24.36■■□□□ 1.49
VARS2-206ENST00000473916 BCANQ96GW7 911 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms