RNA–Protein interactions for RNA: ENST00000473515.5

SCML4-209, Transcript of Scm polycomb group protein like 4, human

TSL 2

Gene SCML4, Length 4,297 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCML4-209	ENST00000473515	BRD4	O60885	1362 aa	Predicted RBP	11.92	□□□□□ -0.5
SCML4-209	ENST00000473515	TPRN	Q4KMQ1	711 aa		11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	KIF21A	Q7Z4S6	1674 aa		11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	PLEKHH2	Q8IVE3	1493 aa		11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	AMPH	P49418	695 aa		11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	PPP2R1A	P30153	589 aa		11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	OS9	Q13438	667 aa	Predicted RBP	11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	FAM161A	Q3B820	660 aa		11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	TRIM44	Q96DX7	344 aa	Predicted RBP	11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	GZF1	Q9H116	711 aa	Predicted RBP	11.91	□□□□□ -0.5
SCML4-209	ENST00000473515	MTHFS	P49914	203 aa		11.9	□□□□□ -0.5
SCML4-209	ENST00000473515	NCL	P19338	710 aa	Known RBP	11.9	□□□□□ -0.5
SCML4-209	ENST00000473515	CALD1	Q05682	793 aa	Known RBP	11.9	□□□□□ -0.5
SCML4-209	ENST00000473515	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11.89	□□□□□ -0.51
SCML4-209	ENST00000473515	CASC1	Q6TDU7	716 aa		11.89	□□□□□ -0.51
SCML4-209	ENST00000473515	COG3	Q96JB2	828 aa		11.89	□□□□□ -0.51
SCML4-209	ENST00000473515	TEX14	Q8IWB6	1497 aa		11.89	□□□□□ -0.51
SCML4-209	ENST00000473515	RNF123	Q5XPI4	1314 aa		11.89	□□□□□ -0.51
SCML4-209	ENST00000473515	NUP153	P49790	1475 aa	Known RBP	11.89	□□□□□ -0.51
SCML4-209	ENST00000473515	KDM6B	O15054	1643 aa		11.88	□□□□□ -0.51
SCML4-209	ENST00000473515	MAGI3	Q5TCQ9	1506 aa		11.88	□□□□□ -0.51
SCML4-209	ENST00000473515	SLC4A10	Q6U841	1118 aa		11.88	□□□□□ -0.51
SCML4-209	ENST00000473515	DIAPH1	O60610	1272 aa	Known RBP	11.88	□□□□□ -0.51
SCML4-209	ENST00000473515	SKAP1	Q86WV1	359 aa		11.88	□□□□□ -0.51
SCML4-209	ENST00000473515	SPATA31E1	Q6ZUB1	1445 aa		11.87	□□□□□ -0.51
SCML4-209	ENST00000473515	HSP90AB1	P08238	724 aa	Known RBP	11.87	□□□□□ -0.51
SCML4-209	ENST00000473515	HMOX1	P09601	288 aa		11.87	□□□□□ -0.51
SCML4-209	ENST00000473515	PMFBP1	Q8TBY8	1022 aa		11.87	□□□□□ -0.51
SCML4-209	ENST00000473515	DHX29	Q7Z478	1369 aa	Known RBP	11.87	□□□□□ -0.51
SCML4-209	ENST00000473515	DENND4B	O75064	1496 aa	Predicted RBP	11.87	□□□□□ -0.51
SCML4-209	ENST00000473515	KIF14	Q15058	1648 aa		11.87	□□□□□ -0.51
SCML4-209	ENST00000473515	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.87	□□□□□ -0.51
SCML4-209	ENST00000473515	RIPK4	P57078	832 aa		11.86	□□□□□ -0.51
SCML4-209	ENST00000473515	PRAM1	Q96QH2	718 aa		11.86	□□□□□ -0.51
SCML4-209	ENST00000473515	GSE1	Q14687	1217 aa		11.86	□□□□□ -0.51
SCML4-209	ENST00000473515	ATP10B	O94823	1461 aa		11.86	□□□□□ -0.51
SCML4-209	ENST00000473515	GOLGA6L22	H0YM25	854 aa		11.86	□□□□□ -0.51
SCML4-209	ENST00000473515	MFAP1	P55081	439 aa	Known RBP	11.86	□□□□□ -0.51
SCML4-209	ENST00000473515	HSCB	Q8IWL3	235 aa		11.86	□□□□□ -0.51
SCML4-209	ENST00000473515	RUNDC1	Q96C34	613 aa		11.86	□□□□□ -0.51
SCML4-209	ENST00000473515	CSB-PGBD3	P0DP91	1061 aa		11.85	□□□□□ -0.51
SCML4-209	ENST00000473515	ERBIN	Q96RT1	1412 aa		11.85	□□□□□ -0.51
SCML4-209	ENST00000473515	TCP11L2	Q8N4U5	519 aa		11.85	□□□□□ -0.51
SCML4-209	ENST00000473515	LRRIQ1	Q96JM4	1722 aa		11.85	□□□□□ -0.51
SCML4-209	ENST00000473515	ABCA5	Q8WWZ7	1642 aa		11.84	□□□□□ -0.51
SCML4-209	ENST00000473515	STK31	Q9BXU1	1019 aa		11.84	□□□□□ -0.51
SCML4-209	ENST00000473515	ZKSCAN2	Q63HK3	967 aa		11.84	□□□□□ -0.51
SCML4-209	ENST00000473515	PANK1	Q8TE04	598 aa		11.83	□□□□□ -0.51
SCML4-209	ENST00000473515	BACH2	Q9BYV9	841 aa		11.83	□□□□□ -0.51
SCML4-209	ENST00000473515	GLIPR1L2	Q4G1C9	344 aa		11.83	□□□□□ -0.52
SCML4-209	ENST00000473515	RAPGEF6	Q8TEU7	1601 aa		11.83	□□□□□ -0.52
SCML4-209	ENST00000473515	LMOD3	Q0VAK6	560 aa		11.82	□□□□□ -0.52
SCML4-209	ENST00000473515	NFKBIB	Q15653	356 aa		11.82	□□□□□ -0.52
SCML4-209	ENST00000473515	TXNDC2	Q86VQ3	553 aa		11.82	□□□□□ -0.52
SCML4-209	ENST00000473515	L1TD1	Q5T7N2	865 aa	Known RBP	11.81	□□□□□ -0.52
SCML4-209	ENST00000473515	DNMT1	P26358	1616 aa	Known RBP	11.81	□□□□□ -0.52
SCML4-209	ENST00000473515	NUTM2G	Q5VZR2	741 aa		11.81	□□□□□ -0.52
SCML4-209	ENST00000473515	IL27	Q8NEV9	243 aa		11.81	□□□□□ -0.52
SCML4-209	ENST00000473515	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.81	□□□□□ -0.52
SCML4-209	ENST00000473515	ADGRF5	Q8IZF2	1346 aa		11.81	□□□□□ -0.52
SCML4-209	ENST00000473515	POLR1A	O95602	1720 aa	Predicted RBP	11.8	□□□□□ -0.52
SCML4-209	ENST00000473515	KCNJ4	P48050	445 aa		11.8	□□□□□ -0.52
SCML4-209	ENST00000473515	TAOK2	Q9UL54	1235 aa		11.8	□□□□□ -0.52
SCML4-209	ENST00000473515	ADAMTS12	P58397	1594 aa		11.8	□□□□□ -0.52
SCML4-209	ENST00000473515	CD109	Q6YHK3	1445 aa		11.8	□□□□□ -0.52
SCML4-209	ENST00000473515	WDR62	O43379	1518 aa		11.8	□□□□□ -0.52
SCML4-209	ENST00000473515	CABP1	Q9NZU7	370 aa		11.8	□□□□□ -0.52
SCML4-209	ENST00000473515	ADGRL1	O94910	1474 aa		11.8	□□□□□ -0.52
SCML4-209	ENST00000473515	SLC52A1	Q9NWF4	448 aa		11.79	□□□□□ -0.52
SCML4-209	ENST00000473515	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.79	□□□□□ -0.52
SCML4-209	ENST00000473515	NECTIN2	Q92692	538 aa		11.79	□□□□□ -0.52
SCML4-209	ENST00000473515	BCAR3	O75815	825 aa		11.79	□□□□□ -0.52
SCML4-209	ENST00000473515	DZIP1L	Q8IYY4	767 aa	Known RBP	11.78	□□□□□ -0.52
SCML4-209	ENST00000473515	FOXD4L1	Q9NU39	408 aa		11.78	□□□□□ -0.52
SCML4-209	ENST00000473515	PZP	P20742	1482 aa		11.78	□□□□□ -0.52
SCML4-209	ENST00000473515	C20orf194	Q5TEA3	1177 aa		11.78	□□□□□ -0.52
SCML4-209	ENST00000473515	PHF23	Q9BUL5	403 aa	Predicted RBP	11.78	□□□□□ -0.52
SCML4-209	ENST00000473515	ANKRD45	Q5TZF3	282 aa		11.77	□□□□□ -0.52
SCML4-209	ENST00000473515	RALGAPB	Q86X10	1494 aa		11.77	□□□□□ -0.52
SCML4-209	ENST00000473515	KIAA0556	O60303	1618 aa		11.77	□□□□□ -0.52
SCML4-209	ENST00000473515	NGEF	Q8N5V2	710 aa		11.77	□□□□□ -0.52
SCML4-209	ENST00000473515	CDK19	Q9BWU1	502 aa		11.77	□□□□□ -0.52
SCML4-209	ENST00000473515	LRPPRC	P42704	1394 aa	Known RBP	11.77	□□□□□ -0.53
SCML4-209	ENST00000473515	SLC26A8	Q96RN1	970 aa		11.77	□□□□□ -0.53
SCML4-209	ENST00000473515	TSR2	Q969E8	191 aa	Known RBP	11.77	□□□□□ -0.53
SCML4-209	ENST00000473515	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.77	□□□□□ -0.53
SCML4-209	ENST00000473515	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.76	□□□□□ -0.53
SCML4-209	ENST00000473515	BRPF3	Q9ULD4	1205 aa		11.76	□□□□□ -0.53
SCML4-209	ENST00000473515	PRKAR2B	P31323	418 aa		11.76	□□□□□ -0.53
SCML4-209	ENST00000473515	IDI1	Q13907	227 aa		11.75	□□□□□ -0.53
SCML4-209	ENST00000473515	FRAT2	O75474	233 aa	Predicted RBP	11.75	□□□□□ -0.53
SCML4-209	ENST00000473515	FANCA	O15360	1455 aa		11.75	□□□□□ -0.53
SCML4-209	ENST00000473515	GOLGA6L3	A6NEY3	463 aa		11.75	□□□□□ -0.53
SCML4-209	ENST00000473515	DISP1	Q96F81	1524 aa		11.75	□□□□□ -0.53
SCML4-209	ENST00000473515	EIF4G3	O43432	1585 aa	Known RBP	11.74	□□□□□ -0.53
SCML4-209	ENST00000473515	FGD1	P98174	961 aa		11.74	□□□□□ -0.53
SCML4-209	ENST00000473515	EXOSC9	Q06265	439 aa	Known RBP	11.74	□□□□□ -0.53
SCML4-209	ENST00000473515	TRIM6-TRIM34	B2RNG4	842 aa		11.74	□□□□□ -0.53
SCML4-209	ENST00000473515	DISP3	Q9P2K9	1392 aa		11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms