RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NUP155O75694 1391 aa28.75■■■□□ 2.19
CCDC88B-206ENST00000473405 ILDR2Q71H61 639 aa28.75■■■□□ 2.19
CCDC88B-206ENST00000473405 RIMS2Q9UQ26 1411 aa28.74■■■□□ 2.19
CCDC88B-206ENST00000473405 SPHKAPQ2M3C7 1700 aa28.73■■■□□ 2.19
CCDC88B-206ENST00000473405 SLC26A8Q96RN1 970 aa28.73■■■□□ 2.19
CCDC88B-206ENST00000473405 PLEKHG1Q9ULL1 1385 aa28.71■■■□□ 2.19
CCDC88B-206ENST00000473405 CHD2O14647 1828 aaKnown RBP28.7■■■□□ 2.18
CCDC88B-206ENST00000473405 NKTRP30414 1462 aaKnown RBP28.7■■■□□ 2.18
CCDC88B-206ENST00000473405 MED1Q15648 1581 aaPredicted RBP28.7■■■□□ 2.18
CCDC88B-206ENST00000473405 KCNA6P17658 529 aa28.68■■■□□ 2.18
CCDC88B-206ENST00000473405 TMEM94Q12767 1356 aa28.67■■■□□ 2.18
CCDC88B-206ENST00000473405 NAIPQ13075 1403 aa28.65■■■□□ 2.18
CCDC88B-206ENST00000473405 SENP3Q9H4L4 574 aaPredicted RBP28.62■■■□□ 2.17
CCDC88B-206ENST00000473405 DIP2AQ14689 1571 aa28.62■■■□□ 2.17
CCDC88B-206ENST00000473405 PPP1R15AO75807 674 aaPredicted RBP28.61■■■□□ 2.17
CCDC88B-206ENST00000473405 CHGAP10645 457 aaKnown RBP28.61■■■□□ 2.17
CCDC88B-206ENST00000473405 ADAMTS13Q76LX8 1427 aa28.6■■■□□ 2.17
CCDC88B-206ENST00000473405 BCANQ96GW7 911 aa28.59■■■□□ 2.17
CCDC88B-206ENST00000473405 CLTCL1P53675 1640 aa28.58■■■□□ 2.17
CCDC88B-206ENST00000473405 HDGFP51858 240 aaKnown RBP28.57■■■□□ 2.16
CCDC88B-206ENST00000473405 RBM33Q96EV2 1170 aaKnown RBP28.57■■■□□ 2.16
CCDC88B-206ENST00000473405 TRPM2O94759 1503 aa28.56■■■□□ 2.16
CCDC88B-206ENST00000473405 PROSER2Q86WR7 435 aaPredicted RBP28.56■■■□□ 2.16
CCDC88B-206ENST00000473405 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.56■■■□□ 2.16
CCDC88B-206ENST00000473405 ROBO1Q9Y6N7 1651 aa28.56■■■□□ 2.16
CCDC88B-206ENST00000473405 NRXN3Q9Y4C0 1643 aa28.55■■■□□ 2.16
CCDC88B-206ENST00000473405 HFM1A2PYH4 1435 aa28.55■■■□□ 2.16
CCDC88B-206ENST00000473405 NUTM2DQ5VT03 806 aaPredicted RBP28.54■■■□□ 2.16
CCDC88B-206ENST00000473405 TBX22Q9Y458 520 aa28.53■■■□□ 2.16
CCDC88B-206ENST00000473405 FAM135BQ49AJ0 1406 aa28.52■■■□□ 2.16
CCDC88B-206ENST00000473405 SETBP1Q9Y6X0 1596 aa28.5■■■□□ 2.15
CCDC88B-206ENST00000473405 SOCS7O14512 581 aa28.5■■■□□ 2.15
CCDC88B-206ENST00000473405 KIF1BO60333 1816 aa28.49■■■□□ 2.15
CCDC88B-206ENST00000473405 MSH6P52701 1360 aa28.48■■■□□ 2.15
CCDC88B-206ENST00000473405 NEXMIFQ5QGS0 1516 aa28.47■■■□□ 2.15
CCDC88B-206ENST00000473405 PIK3R4Q99570 1358 aa28.47■■■□□ 2.15
CCDC88B-206ENST00000473405 XRN1Q8IZH2 1706 aaKnown RBP28.46■■■□□ 2.15
CCDC88B-206ENST00000473405 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.43■■■□□ 2.14
CCDC88B-206ENST00000473405 PTPRUQ92729 1446 aa28.43■■■□□ 2.14
CCDC88B-206ENST00000473405 NCOA3Q9Y6Q9 1424 aa28.43■■■□□ 2.14
CCDC88B-206ENST00000473405 PHLPP1O60346 1717 aa28.38■■■□□ 2.13
CCDC88B-206ENST00000473405 ZNF326Q5BKZ1 582 aaKnown RBP28.37■■■□□ 2.13
CCDC88B-206ENST00000473405 SLAIN2Q9P270 581 aa28.36■■■□□ 2.13
CCDC88B-206ENST00000473405 SETD1AO15047 1707 aaKnown RBP28.35■■■□□ 2.13
CCDC88B-206ENST00000473405 TRIM52Q96A61 297 aa28.34■■■□□ 2.13
CCDC88B-206ENST00000473405 AMOTL2Q9Y2J4 779 aa28.33■■■□□ 2.13
CCDC88B-206ENST00000473405 METP08581 1390 aa28.32■■■□□ 2.12
CCDC88B-206ENST00000473405 COL16A1Q07092 1604 aaPredicted RBP28.32■■■□□ 2.12
CCDC88B-206ENST00000473405 PPLO60437 1756 aa28.32■■■□□ 2.12
CCDC88B-206ENST00000473405 PHF23Q9BUL5 403 aaPredicted RBP28.31■■■□□ 2.12
CCDC88B-206ENST00000473405 SLC4A1APQ9BWU0 796 aaKnown RBP28.29■■■□□ 2.12
CCDC88B-206ENST00000473405 C14orf37Q86TY3 774 aa28.28■■■□□ 2.12
CCDC88B-206ENST00000473405 C19orf44Q9H6X5 657 aa28.27■■■□□ 2.12
CCDC88B-206ENST00000473405 NALCNQ8IZF0 1738 aa28.26■■■□□ 2.12
CCDC88B-206ENST00000473405 DCCP43146 1447 aa28.26■■■□□ 2.11
CCDC88B-206ENST00000473405 AHDC1Q5TGY3 1603 aaPredicted RBP28.25■■■□□ 2.11
CCDC88B-206ENST00000473405 CADPS2Q86UW7 1296 aa28.24■■■□□ 2.11
CCDC88B-206ENST00000473405 ATF3P18847 181 aa28.21■■■□□ 2.11
CCDC88B-206ENST00000473405 RGS17Q9UGC6 210 aaPredicted RBP28.21■■■□□ 2.11
CCDC88B-206ENST00000473405 FOXD1Q16676 465 aa28.2■■■□□ 2.1
CCDC88B-206ENST00000473405 IFT172Q9UG01 1749 aa28.2■■■□□ 2.1
CCDC88B-206ENST00000473405 ADGRL3Q9HAR2 1447 aa28.18■■■□□ 2.1
CCDC88B-206ENST00000473405 SHPRHQ149N8 1683 aa28.17■■■□□ 2.1
CCDC88B-206ENST00000473405 JCADQ9P266 1359 aa28.17■■■□□ 2.1
CCDC88B-206ENST00000473405 MST1RQ04912 1400 aa28.17■■■□□ 2.1
CCDC88B-206ENST00000473405 RPGRIP1LQ68CZ1 1315 aa28.17■■■□□ 2.1
CCDC88B-206ENST00000473405 VGFO15240 615 aaPredicted RBP28.16■■■□□ 2.1
CCDC88B-206ENST00000473405 NHSL1Q5SYE7 1610 aa28.16■■■□□ 2.1
CCDC88B-206ENST00000473405 ASXL1Q8IXJ9 1541 aa28.16■■■□□ 2.1
CCDC88B-206ENST00000473405 PTCH1Q13635 1447 aa28.16■■■□□ 2.1
CCDC88B-206ENST00000473405 PRAG1Q86YV5 1406 aa28.16■■■□□ 2.1
CCDC88B-206ENST00000473405 CCDC144AA2RUR9 1427 aa28.14■■■□□ 2.1
CCDC88B-206ENST00000473405 SPATA31E1Q6ZUB1 1445 aa28.14■■■□□ 2.1
CCDC88B-206ENST00000473405 BRINP3Q76B58 766 aa28.12■■■□□ 2.09
CCDC88B-206ENST00000473405 MPHOSPH9Q99550 1183 aa28.11■■■□□ 2.09
CCDC88B-206ENST00000473405 LRP6O75581 1613 aa28.1■■■□□ 2.09
CCDC88B-206ENST00000473405 ROBO2Q9HCK4 1378 aa28.09■■■□□ 2.09
CCDC88B-206ENST00000473405 SETD5Q9C0A6 1442 aa28.08■■■□□ 2.09
CCDC88B-206ENST00000473405 LAMC1P11047 1609 aa28.03■■■□□ 2.08
CCDC88B-206ENST00000473405 ADGRF5Q8IZF2 1346 aa28.03■■■□□ 2.08
CCDC88B-206ENST00000473405 POTEAQ6S8J7 498 aa28.03■■■□□ 2.08
CCDC88B-206ENST00000473405 SPATA31A6Q5VVP1 1343 aa28.02■■■□□ 2.08
CCDC88B-206ENST00000473405 C1orf167Q5SNV9 1468 aa28.01■■■□□ 2.07
CCDC88B-206ENST00000473405 ANKRD30BQ9BXX2 1392 aa28■■■□□ 2.07
CCDC88B-206ENST00000473405 KNDC1Q76NI1 1749 aa28■■■□□ 2.07
CCDC88B-206ENST00000473405 RGL3Q3MIN7 710 aa27.99■■■□□ 2.07
CCDC88B-206ENST00000473405 PIK3C2GO75747 1445 aa27.99■■■□□ 2.07
CCDC88B-206ENST00000473405 RAB3GAP2Q9H2M9 1393 aa27.99■■■□□ 2.07
CCDC88B-206ENST00000473405 CDC42BPGQ6DT37 1551 aa27.98■■■□□ 2.07
CCDC88B-206ENST00000473405 ACIN1Q9UKV3 1341 aaKnown RBP27.97■■■□□ 2.07
CCDC88B-206ENST00000473405 TECPR2O15040 1411 aa27.96■■■□□ 2.07
CCDC88B-206ENST00000473405 DDX17Q92841 729 aaKnown RBP27.93■■■□□ 2.06
CCDC88B-206ENST00000473405 NRXN1Q9ULB1 1477 aa27.91■■■□□ 2.06
CCDC88B-206ENST00000473405 MYOM2P54296 1465 aa27.9■■■□□ 2.06
CCDC88B-206ENST00000473405 LRPPRCP42704 1394 aaKnown RBP27.89■■■□□ 2.06
CCDC88B-206ENST00000473405 PNPLA6Q8IY17 1366 aa27.87■■■□□ 2.05
CCDC88B-206ENST00000473405 MEX3CQ5U5Q3 659 aaKnown RBP27.87■■■□□ 2.05
CCDC88B-206ENST00000473405 LRRC59Q96AG4 307 aaKnown RBP27.86■■■□□ 2.05
CCDC88B-206ENST00000473405 ORAI2Q96SN7 254 aa27.86■■■□□ 2.05
CCDC88B-206ENST00000473405 ABCC11Q96J66 1382 aa27.86■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms