RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 TMEM94Q12767 1356 aa20.75■□□□□ 0.91
CHD3-209ENST00000473376 SLC26A8Q96RN1 970 aa20.75■□□□□ 0.91
CHD3-209ENST00000473376 NWD1Q149M9 1564 aa20.74■□□□□ 0.91
CHD3-209ENST00000473376 TBX22Q9Y458 520 aa20.74■□□□□ 0.91
CHD3-209ENST00000473376 NCOA3Q9Y6Q9 1424 aa20.73■□□□□ 0.91
CHD3-209ENST00000473376 RIMS2Q9UQ26 1411 aa20.72■□□□□ 0.91
CHD3-209ENST00000473376 TMEM131LA2VDJ0 1609 aa20.72■□□□□ 0.91
CHD3-209ENST00000473376 IQGAP3Q86VI3 1631 aa20.72■□□□□ 0.91
CHD3-209ENST00000473376 PROSER2Q86WR7 435 aaPredicted RBP20.72■□□□□ 0.91
CHD3-209ENST00000473376 XIRP1Q702N8 1843 aaKnown RBP20.71■□□□□ 0.91
CHD3-209ENST00000473376 PIK3R4Q99570 1358 aa20.71■□□□□ 0.91
CHD3-209ENST00000473376 NUP155O75694 1391 aa20.7■□□□□ 0.9
CHD3-209ENST00000473376 PPP1R15AO75807 674 aaPredicted RBP20.69■□□□□ 0.9
CHD3-209ENST00000473376 BCANQ96GW7 911 aa20.67■□□□□ 0.9
CHD3-209ENST00000473376 E9PCH4 1651 aa20.67■□□□□ 0.9
CHD3-209ENST00000473376 MSH6P52701 1360 aa20.66■□□□□ 0.9
CHD3-209ENST00000473376 DIP2AQ14689 1571 aa20.65■□□□□ 0.9
CHD3-209ENST00000473376 PHF23Q9BUL5 403 aaPredicted RBP20.65■□□□□ 0.9
CHD3-209ENST00000473376 ADAMTS13Q76LX8 1427 aa20.62■□□□□ 0.89
CHD3-209ENST00000473376 RRBP1Q9P2E9 1410 aaKnown RBP20.62■□□□□ 0.89
CHD3-209ENST00000473376 SLAIN2Q9P270 581 aa20.62■□□□□ 0.89
CHD3-209ENST00000473376 CHD2O14647 1828 aaKnown RBP20.62■□□□□ 0.89
CHD3-209ENST00000473376 CHGAP10645 457 aaKnown RBP20.6■□□□□ 0.89
CHD3-209ENST00000473376 MYO5BQ9ULV0 1848 aa20.58■□□□□ 0.89
CHD3-209ENST00000473376 ITGAEP38570 1179 aa20.58■□□□□ 0.89
CHD3-209ENST00000473376 C19orf44Q9H6X5 657 aa20.57■□□□□ 0.88
CHD3-209ENST00000473376 CADPS2Q86UW7 1296 aa20.56■□□□□ 0.88
CHD3-209ENST00000473376 ROBO1Q9Y6N7 1651 aa20.56■□□□□ 0.88
CHD3-209ENST00000473376 TRPM2O94759 1503 aa20.54■□□□□ 0.88
CHD3-209ENST00000473376 RBM33Q96EV2 1170 aaKnown RBP20.54■□□□□ 0.88
CHD3-209ENST00000473376 NAIPQ13075 1403 aa20.53■□□□□ 0.88
CHD3-209ENST00000473376 SETBP1Q9Y6X0 1596 aa20.52■□□□□ 0.88
CHD3-209ENST00000473376 DCCP43146 1447 aa20.52■□□□□ 0.87
CHD3-209ENST00000473376 RGS17Q9UGC6 210 aaPredicted RBP20.51■□□□□ 0.87
CHD3-209ENST00000473376 AMOTL2Q9Y2J4 779 aa20.51■□□□□ 0.87
CHD3-209ENST00000473376 SPHKAPQ2M3C7 1700 aa20.5■□□□□ 0.87
CHD3-209ENST00000473376 JCADQ9P266 1359 aa20.5■□□□□ 0.87
CHD3-209ENST00000473376 SENP3Q9H4L4 574 aaPredicted RBP20.5■□□□□ 0.87
CHD3-209ENST00000473376 ATF3P18847 181 aa20.49■□□□□ 0.87
CHD3-209ENST00000473376 HFM1A2PYH4 1435 aa20.49■□□□□ 0.87
CHD3-209ENST00000473376 NUTM2DQ5VT03 806 aaPredicted RBP20.48■□□□□ 0.87
CHD3-209ENST00000473376 PPARGC1BQ86YN6 1023 aaKnown RBP20.48■□□□□ 0.87
CHD3-209ENST00000473376 C14orf37Q86TY3 774 aa20.47■□□□□ 0.87
CHD3-209ENST00000473376 PTPRUQ92729 1446 aa20.46■□□□□ 0.87
CHD3-209ENST00000473376 ZNF326Q5BKZ1 582 aaKnown RBP20.45■□□□□ 0.86
CHD3-209ENST00000473376 SPATA31A6Q5VVP1 1343 aa20.45■□□□□ 0.86
CHD3-209ENST00000473376 RPGRIP1LQ68CZ1 1315 aa20.44■□□□□ 0.86
CHD3-209ENST00000473376 NRXN3Q9Y4C0 1643 aa20.43■□□□□ 0.86
CHD3-209ENST00000473376 VGFO15240 615 aaPredicted RBP20.43■□□□□ 0.86
CHD3-209ENST00000473376 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.43■□□□□ 0.86
CHD3-209ENST00000473376 AHDC1Q5TGY3 1603 aaPredicted RBP20.42■□□□□ 0.86
CHD3-209ENST00000473376 PHLPP1O60346 1717 aa20.42■□□□□ 0.86
CHD3-209ENST00000473376 XRN1Q8IZH2 1706 aaKnown RBP20.42■□□□□ 0.86
CHD3-209ENST00000473376 ACIN1Q9UKV3 1341 aaKnown RBP20.42■□□□□ 0.86
CHD3-209ENST00000473376 NEXMIFQ5QGS0 1516 aa20.41■□□□□ 0.86
CHD3-209ENST00000473376 COL16A1Q07092 1604 aaPredicted RBP20.41■□□□□ 0.86
CHD3-209ENST00000473376 METP08581 1390 aa20.4■□□□□ 0.86
CHD3-209ENST00000473376 CLTCL1P53675 1640 aa20.4■□□□□ 0.86
CHD3-209ENST00000473376 PRAG1Q86YV5 1406 aa20.38■□□□□ 0.85
CHD3-209ENST00000473376 BRINP3Q76B58 766 aa20.38■□□□□ 0.85
CHD3-209ENST00000473376 SLC4A1APQ9BWU0 796 aaKnown RBP20.37■□□□□ 0.85
CHD3-209ENST00000473376 POTEAQ6S8J7 498 aa20.36■□□□□ 0.85
CHD3-209ENST00000473376 TRIM52Q96A61 297 aa20.36■□□□□ 0.85
CHD3-209ENST00000473376 ADGRL3Q9HAR2 1447 aa20.36■□□□□ 0.85
CHD3-209ENST00000473376 KIF1BO60333 1816 aa20.35■□□□□ 0.85
CHD3-209ENST00000473376 MST1RQ04912 1400 aa20.35■□□□□ 0.85
CHD3-209ENST00000473376 PTCH1Q13635 1447 aa20.35■□□□□ 0.85
CHD3-209ENST00000473376 SETD5Q9C0A6 1442 aa20.34■□□□□ 0.85
CHD3-209ENST00000473376 ZNF772Q68DY9 489 aaPredicted RBP20.32■□□□□ 0.84
CHD3-209ENST00000473376 SHPRHQ149N8 1683 aa20.32■□□□□ 0.84
CHD3-209ENST00000473376 LRRC59Q96AG4 307 aaKnown RBP20.31■□□□□ 0.84
CHD3-209ENST00000473376 ASXL1Q8IXJ9 1541 aa20.31■□□□□ 0.84
CHD3-209ENST00000473376 LRP6O75581 1613 aa20.27■□□□□ 0.83
CHD3-209ENST00000473376 ANKRD30BQ9BXX2 1392 aa20.25■□□□□ 0.83
CHD3-209ENST00000473376 MEX3CQ5U5Q3 659 aaKnown RBP20.25■□□□□ 0.83
CHD3-209ENST00000473376 NHSL1Q5SYE7 1610 aa20.24■□□□□ 0.83
CHD3-209ENST00000473376 CCDC144AA2RUR9 1427 aa20.24■□□□□ 0.83
CHD3-209ENST00000473376 SETD1AO15047 1707 aaKnown RBP20.24■□□□□ 0.83
CHD3-209ENST00000473376 C1orf167Q5SNV9 1468 aa20.24■□□□□ 0.83
CHD3-209ENST00000473376 ROBO2Q9HCK4 1378 aa20.23■□□□□ 0.83
CHD3-209ENST00000473376 MPHOSPH9Q99550 1183 aa20.23■□□□□ 0.83
CHD3-209ENST00000473376 LAMC1P11047 1609 aa20.22■□□□□ 0.83
CHD3-209ENST00000473376 PPLO60437 1756 aa20.21■□□□□ 0.83
CHD3-209ENST00000473376 SPATA31E1Q6ZUB1 1445 aa20.21■□□□□ 0.83
CHD3-209ENST00000473376 NALCNQ8IZF0 1738 aa20.21■□□□□ 0.83
CHD3-209ENST00000473376 SOS2Q07890 1332 aaPredicted RBP20.2■□□□□ 0.82
CHD3-209ENST00000473376 TECPR2O15040 1411 aa20.19■□□□□ 0.82
CHD3-209ENST00000473376 CDK12Q9NYV4 1490 aaPredicted RBP20.19■□□□□ 0.82
CHD3-209ENST00000473376 PNPLA6Q8IY17 1366 aa20.18■□□□□ 0.82
CHD3-209ENST00000473376 ABCC11Q96J66 1382 aa20.17■□□□□ 0.82
CHD3-209ENST00000473376 RXRBP28702 533 aa20.16■□□□□ 0.82
CHD3-209ENST00000473376 SIRT1Q96EB6 747 aa20.16■□□□□ 0.82
CHD3-209ENST00000473376 FOXD1Q16676 465 aa20.15■□□□□ 0.82
CHD3-209ENST00000473376 LRPPRCP42704 1394 aaKnown RBP20.14■□□□□ 0.81
CHD3-209ENST00000473376 ADGRF5Q8IZF2 1346 aa20.14■□□□□ 0.81
CHD3-209ENST00000473376 CDC42BPGQ6DT37 1551 aa20.13■□□□□ 0.81
CHD3-209ENST00000473376 NUTM2BA6NNL0 878 aaPredicted RBP20.13■□□□□ 0.81
CHD3-209ENST00000473376 NUTM2EB1AL46 878 aaPredicted RBP20.13■□□□□ 0.81
CHD3-209ENST00000473376 NUTM2AQ8IVF1 878 aaPredicted RBP20.13■□□□□ 0.81
CHD3-209ENST00000473376 PIK3C2GO75747 1445 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms