RNA–Protein interactions for RNA: ENST00000472988.5

SMARCD3-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,654 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-209ENST00000472988 KIAA1210Q9ULL0 1709 aa27.33■■□□□ 1.97
SMARCD3-209ENST00000472988 STAC3Q96MF2 364 aa27.31■■□□□ 1.96
SMARCD3-209ENST00000472988 RPGRIP1LQ68CZ1 1315 aa27.31■■□□□ 1.96
SMARCD3-209ENST00000472988 PTPRMP28827 1452 aa27.3■■□□□ 1.96
SMARCD3-209ENST00000472988 LAMC1P11047 1609 aa27.29■■□□□ 1.96
SMARCD3-209ENST00000472988 STAG3Q9UJ98 1225 aa27.27■■□□□ 1.96
SMARCD3-209ENST00000472988 ZNF142P52746 1687 aaPredicted RBP27.27■■□□□ 1.96
SMARCD3-209ENST00000472988 ADGRF5Q8IZF2 1346 aa27.27■■□□□ 1.96
SMARCD3-209ENST00000472988 PIK3C2GO75747 1445 aa27.25■■□□□ 1.95
SMARCD3-209ENST00000472988 CEP170BQ9Y4F5 1589 aaPredicted RBP27.25■■□□□ 1.95
SMARCD3-209ENST00000472988 SETD1BQ9UPS6 1966 aaKnown RBP27.24■■□□□ 1.95
SMARCD3-209ENST00000472988 ZFYVE9O95405 1425 aa27.24■■□□□ 1.95
SMARCD3-209ENST00000472988 ZNF316A6NFI3 1004 aaPredicted RBP27.22■■□□□ 1.95
SMARCD3-209ENST00000472988 ROCK2O75116 1388 aaKnown RBP27.22■■□□□ 1.95
SMARCD3-209ENST00000472988 GPRASP1Q5JY77 1395 aa27.21■■□□□ 1.95
SMARCD3-209ENST00000472988 RIMS2Q9UQ26 1411 aa27.21■■□□□ 1.95
SMARCD3-209ENST00000472988 NUTM2DQ5VT03 806 aaPredicted RBP27.21■■□□□ 1.95
SMARCD3-209ENST00000472988 IQGAP1P46940 1657 aa27.2■■□□□ 1.94
SMARCD3-209ENST00000472988 NBPF1Q3BBV0 1214 aa27.19■■□□□ 1.94
SMARCD3-209ENST00000472988 VGFO15240 615 aaPredicted RBP27.17■■□□□ 1.94
SMARCD3-209ENST00000472988 SETBP1Q9Y6X0 1596 aa27.16■■□□□ 1.94
SMARCD3-209ENST00000472988 TMEM2Q9UHN6 1383 aa27.15■■□□□ 1.94
SMARCD3-209ENST00000472988 CARD11Q9BXL7 1154 aa27.15■■□□□ 1.94
SMARCD3-209ENST00000472988 SLIT1O75093 1534 aa27.15■■□□□ 1.94
SMARCD3-209ENST00000472988 USP47Q96K76 1375 aa27.15■■□□□ 1.94
SMARCD3-209ENST00000472988 SETD1AO15047 1707 aaKnown RBP27.14■■□□□ 1.94
SMARCD3-209ENST00000472988 NRXN3Q9Y4C0 1643 aa27.14■■□□□ 1.94
SMARCD3-209ENST00000472988 EIF4G2P78344 907 aaKnown RBP eCLIP27.14■■□□□ 1.93
SMARCD3-209ENST00000472988 HIRIP3Q9BW71 556 aaPredicted RBP27.14■■□□□ 1.93
SMARCD3-209ENST00000472988 HSPA5P11021 654 aaKnown RBP27.13■■□□□ 1.93
SMARCD3-209ENST00000472988 ARHGAP23Q9P227 1491 aa27.13■■□□□ 1.93
SMARCD3-209ENST00000472988 CFAP70Q5T0N1 1121 aa27.12■■□□□ 1.93
SMARCD3-209ENST00000472988 ADGRB1O14514 1584 aa27.12■■□□□ 1.93
SMARCD3-209ENST00000472988 KDM4FA0A1W2PPD8 638 aa27.11■■□□□ 1.93
SMARCD3-209ENST00000472988 POLR1AO95602 1720 aaPredicted RBP27.1■■□□□ 1.93
SMARCD3-209ENST00000472988 ASXL1Q8IXJ9 1541 aa27.09■■□□□ 1.93
SMARCD3-209ENST00000472988 ALKQ9UM73 1620 aa27.09■■□□□ 1.93
SMARCD3-209ENST00000472988 C14orf93Q9H972 538 aaKnown RBP27.08■■□□□ 1.93
SMARCD3-209ENST00000472988 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.06■■□□□ 1.92
SMARCD3-209ENST00000472988 SCAF11Q99590 1463 aaKnown RBP27.05■■□□□ 1.92
SMARCD3-209ENST00000472988 SENP3Q9H4L4 574 aaPredicted RBP27.04■■□□□ 1.92
SMARCD3-209ENST00000472988 THEMISQ8N1K5 641 aaPredicted RBP27.03■■□□□ 1.92
SMARCD3-209ENST00000472988 ARHGEF28Q8N1W1 1705 aaKnown RBP27.01■■□□□ 1.91
SMARCD3-209ENST00000472988 LTKP29376 864 aa27.01■■□□□ 1.91
SMARCD3-209ENST00000472988 HDGFP51858 240 aaKnown RBP27.01■■□□□ 1.91
SMARCD3-209ENST00000472988 PLEKHG1Q9ULL1 1385 aa26.98■■□□□ 1.91
SMARCD3-209ENST00000472988 TXNDC2Q86VQ3 553 aa26.97■■□□□ 1.91
SMARCD3-209ENST00000472988 ST20-MTHFSA0A0A6YYL1 179 aa26.96■■□□□ 1.91
SMARCD3-209ENST00000472988 TMEM132EQ6IEE7 984 aa26.96■■□□□ 1.91
SMARCD3-209ENST00000472988 EID1Q9Y6B2 187 aa26.95■■□□□ 1.91
SMARCD3-209ENST00000472988 ADAMTS13Q76LX8 1427 aa26.94■■□□□ 1.9
SMARCD3-209ENST00000472988 QRICH2Q9H0J4 1663 aa26.93■■□□□ 1.9
SMARCD3-209ENST00000472988 EIF3AQ14152 1382 aaKnown RBP26.92■■□□□ 1.9
SMARCD3-209ENST00000472988 KNDC1Q76NI1 1749 aa26.91■■□□□ 1.9
SMARCD3-209ENST00000472988 MED14O60244 1454 aa26.9■■□□□ 1.9
SMARCD3-209ENST00000472988 DIP2AQ14689 1571 aa26.9■■□□□ 1.9
SMARCD3-209ENST00000472988 YTHDC2Q9H6S0 1430 aaKnown RBP26.9■■□□□ 1.9
SMARCD3-209ENST00000472988 C11orf95C9JLR9 678 aaPredicted RBP26.89■■□□□ 1.9
SMARCD3-209ENST00000472988 WASHC2AQ641Q2 1341 aa26.87■■□□□ 1.89
SMARCD3-209ENST00000472988 METP08581 1390 aa26.87■■□□□ 1.89
SMARCD3-209ENST00000472988 TESK2Q96S53 571 aa26.87■■□□□ 1.89
SMARCD3-209ENST00000472988 TRAK1Q9UPV9 953 aa26.87■■□□□ 1.89
SMARCD3-209ENST00000472988 CCDC7Q96M83 1385 aa26.86■■□□□ 1.89
SMARCD3-209ENST00000472988 BCANQ96GW7 911 aa26.85■■□□□ 1.89
SMARCD3-209ENST00000472988 LMTK3Q96Q04 1460 aa26.85■■□□□ 1.89
SMARCD3-209ENST00000472988 DLC1Q96QB1 1528 aa26.84■■□□□ 1.89
SMARCD3-209ENST00000472988 ANKLE2Q86XL3 938 aa26.83■■□□□ 1.89
SMARCD3-209ENST00000472988 KIF7Q2M1P5 1343 aa26.83■■□□□ 1.89
SMARCD3-209ENST00000472988 LRPPRCP42704 1394 aaKnown RBP26.83■■□□□ 1.89
SMARCD3-209ENST00000472988 STK26Q9P289 416 aa26.81■■□□□ 1.88
SMARCD3-209ENST00000472988 CPS1P31327 1500 aa26.81■■□□□ 1.88
SMARCD3-209ENST00000472988 DISP3Q9P2K9 1392 aa26.8■■□□□ 1.88
SMARCD3-209ENST00000472988 SLC26A8Q96RN1 970 aa26.79■■□□□ 1.88
SMARCD3-209ENST00000472988 CENPJQ9HC77 1338 aaPredicted RBP26.79■■□□□ 1.88
SMARCD3-209ENST00000472988 DIEXFQ68CQ4 756 aaKnown RBP26.79■■□□□ 1.88
SMARCD3-209ENST00000472988 SBNO2Q9Y2G9 1366 aa26.79■■□□□ 1.88
SMARCD3-209ENST00000472988 XRN1Q8IZH2 1706 aaKnown RBP26.78■■□□□ 1.88
SMARCD3-209ENST00000472988 TECPR2O15040 1411 aa26.78■■□□□ 1.88
SMARCD3-209ENST00000472988 NPHP4O75161 1426 aaPredicted RBP26.77■■□□□ 1.88
SMARCD3-209ENST00000472988 ABCC11Q96J66 1382 aa26.77■■□□□ 1.88
SMARCD3-209ENST00000472988 PTPRUQ92729 1446 aa26.76■■□□□ 1.87
SMARCD3-209ENST00000472988 TBX22Q9Y458 520 aa26.76■■□□□ 1.87
SMARCD3-209ENST00000472988 CHD2O14647 1828 aaKnown RBP26.75■■□□□ 1.87
SMARCD3-209ENST00000472988 DDX10Q13206 875 aaKnown RBP26.75■■□□□ 1.87
SMARCD3-209ENST00000472988 NCKAP5LQ9HCH0 1330 aa26.74■■□□□ 1.87
SMARCD3-209ENST00000472988 STRCQ7RTU9 1775 aa26.73■■□□□ 1.87
SMARCD3-209ENST00000472988 TMF1P82094 1093 aa26.73■■□□□ 1.87
SMARCD3-209ENST00000472988 HSPA2P54652 639 aa26.72■■□□□ 1.87
SMARCD3-209ENST00000472988 MYOM1P52179 1685 aa26.71■■□□□ 1.87
SMARCD3-209ENST00000472988 TULP4Q9NRJ4 1543 aa26.71■■□□□ 1.87
SMARCD3-209ENST00000472988 PRAM1Q96QH2 718 aa26.7■■□□□ 1.87
SMARCD3-209ENST00000472988 FAM135BQ49AJ0 1406 aa26.69■■□□□ 1.86
SMARCD3-209ENST00000472988 PIK3R4Q99570 1358 aa26.69■■□□□ 1.86
SMARCD3-209ENST00000472988 PLEKHH1Q9ULM0 1364 aa26.69■■□□□ 1.86
SMARCD3-209ENST00000472988 POLR3GLQ9BT43 218 aa26.69■■□□□ 1.86
SMARCD3-209ENST00000472988 ROBO2Q9HCK4 1378 aa26.67■■□□□ 1.86
SMARCD3-209ENST00000472988 SAFB2Q14151 953 aaKnown RBP eCLIP26.66■■□□□ 1.86
SMARCD3-209ENST00000472988 POGKQ9P215 609 aa26.66■■□□□ 1.86
SMARCD3-209ENST00000472988 PTCH1Q13635 1447 aa26.65■■□□□ 1.86
SMARCD3-209ENST00000472988 WAPLQ7Z5K2 1190 aa26.64■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms