RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SMAP	O00193	183 aa		8.01	□□□□□ -1.13
PTCD3-209	ENST00000472044	SH3D19	Q5HYK7	790 aa		8.01	□□□□□ -1.13
PTCD3-209	ENST00000472044	SULF1	Q8IWU6	871 aa		8.01	□□□□□ -1.13
PTCD3-209	ENST00000472044	RSPH6A	Q9H0K4	717 aa		8.01	□□□□□ -1.13
PTCD3-209	ENST00000472044	BHMG1	C9JSJ3	638 aa	Predicted RBP	7.99	□□□□□ -1.13
PTCD3-209	ENST00000472044	CD46	P15529	392 aa		7.99	□□□□□ -1.13
PTCD3-209	ENST00000472044	DIXDC1	Q155Q3	683 aa		7.99	□□□□□ -1.13
PTCD3-209	ENST00000472044	LAPTM4B	Q86VI4	370 aa		7.99	□□□□□ -1.13
PTCD3-209	ENST00000472044	SKIV2L	Q15477	1246 aa	Known RBP	7.98	□□□□□ -1.13
PTCD3-209	ENST00000472044	FAM98C	Q17RN3	349 aa	Known RBP	7.98	□□□□□ -1.13
PTCD3-209	ENST00000472044	NBPF3	Q9H094	633 aa		7.96	□□□□□ -1.14
PTCD3-209	ENST00000472044	SEPT9	Q9UHD8	586 aa	Predicted RBP	7.96	□□□□□ -1.14
PTCD3-209	ENST00000472044	TIMELESS	Q9UNS1	1208 aa		7.96	□□□□□ -1.14
PTCD3-209	ENST00000472044	DDX11L8	A8MPP1	907 aa		7.95	□□□□□ -1.14
PTCD3-209	ENST00000472044	LSM11	P83369	360 aa	Known RBP eCLIP	7.95	□□□□□ -1.14
PTCD3-209	ENST00000472044	MYSM1	Q5VVJ2	828 aa		7.95	□□□□□ -1.14
PTCD3-209	ENST00000472044	PCMTD1	Q96MG8	357 aa	Predicted RBP	7.95	□□□□□ -1.14
PTCD3-209	ENST00000472044	HDGF	P51858	240 aa	Known RBP	7.94	□□□□□ -1.14
PTCD3-209	ENST00000472044	SWT1	Q5T5J6	900 aa	Known RBP	7.94	□□□□□ -1.14
PTCD3-209	ENST00000472044	RSPH4A	Q5TD94	716 aa		7.94	□□□□□ -1.14
PTCD3-209	ENST00000472044	TBC1D2	Q9BYX2	928 aa		7.94	□□□□□ -1.14
PTCD3-209	ENST00000472044	HR	O43593	1189 aa		7.93	□□□□□ -1.14
PTCD3-209	ENST00000472044	ADGRD1	Q6QNK2	874 aa		7.93	□□□□□ -1.14
PTCD3-209	ENST00000472044	SPIRE2	Q8WWL2	714 aa		7.93	□□□□□ -1.14
PTCD3-209	ENST00000472044	GJA5	P36382	358 aa		7.92	□□□□□ -1.14
PTCD3-209	ENST00000472044	TUSC1	Q2TAM9	212 aa		7.92	□□□□□ -1.14
PTCD3-209	ENST00000472044	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	7.92	□□□□□ -1.14
PTCD3-209	ENST00000472044	SLC10A3	P09131	477 aa		7.91	□□□□□ -1.14
PTCD3-209	ENST00000472044	GCGR	P47871	477 aa		7.91	□□□□□ -1.14
PTCD3-209	ENST00000472044	NUTM1	Q86Y26	1132 aa		7.91	□□□□□ -1.14
PTCD3-209	ENST00000472044	SLF2	Q8IX21	1173 aa		7.91	□□□□□ -1.14
PTCD3-209	ENST00000472044	ZFR	Q96KR1	1074 aa	Known RBP	7.91	□□□□□ -1.14
PTCD3-209	ENST00000472044	SLC4A3	P48751	1232 aa		7.9	□□□□□ -1.14
PTCD3-209	ENST00000472044	CLK2	P49760	499 aa	Known RBP	7.9	□□□□□ -1.14
PTCD3-209	ENST00000472044	SAMD7	Q7Z3H4	446 aa		7.9	□□□□□ -1.14
PTCD3-209	ENST00000472044	MRPL50	Q8N5N7	158 aa	Known RBP	7.9	□□□□□ -1.14
PTCD3-209	ENST00000472044	RDH13	Q8NBN7	331 aa		7.9	□□□□□ -1.14
PTCD3-209	ENST00000472044	SPTLC1	O15269	473 aa		7.89	□□□□□ -1.15
PTCD3-209	ENST00000472044	USP46	P62068	366 aa		7.89	□□□□□ -1.15
PTCD3-209	ENST00000472044	C14orf37	Q86TY3	774 aa		7.89	□□□□□ -1.15
PTCD3-209	ENST00000472044	CDAN1	Q8IWY9	1227 aa		7.89	□□□□□ -1.15
PTCD3-209	ENST00000472044	PROCA1	Q8NCQ7	364 aa	Predicted RBP	7.89	□□□□□ -1.15
PTCD3-209	ENST00000472044	POLR3E	Q9NVU0	708 aa		7.89	□□□□□ -1.15
PTCD3-209	ENST00000472044	KDM4A	O75164	1064 aa		7.88	□□□□□ -1.15
PTCD3-209	ENST00000472044	RIC3	Q7Z5B4	369 aa		7.88	□□□□□ -1.15
PTCD3-209	ENST00000472044	PPP2R2D	Q66LE6	453 aa		7.87	□□□□□ -1.15
PTCD3-209	ENST00000472044	RSBN1L	Q6PCB5	846 aa	Predicted RBP	7.87	□□□□□ -1.15
PTCD3-209	ENST00000472044	NECTIN2	Q92692	538 aa		7.87	□□□□□ -1.15
PTCD3-209	ENST00000472044	LIMD1	Q9UGP4	676 aa		7.87	□□□□□ -1.15
PTCD3-209	ENST00000472044	MOXD2P	A6NHM9	499 aa		7.86	□□□□□ -1.15
PTCD3-209	ENST00000472044	FLII	Q13045	1269 aa		7.86	□□□□□ -1.15
PTCD3-209	ENST00000472044	ANKRD13D	Q6ZTN6	518 aa		7.86	□□□□□ -1.15
PTCD3-209	ENST00000472044	HOXA2	O43364	376 aa		7.85	□□□□□ -1.15
PTCD3-209	ENST00000472044	KRTAP3-3	Q9BYR6	98 aa		7.85	□□□□□ -1.15
PTCD3-209	ENST00000472044	KRTAP3-2	Q9BYR7	98 aa		7.85	□□□□□ -1.15
PTCD3-209	ENST00000472044	LRCH3	Q96II8	777 aa		7.84	□□□□□ -1.15
PTCD3-209	ENST00000472044	STAC3	Q96MF2	364 aa		7.84	□□□□□ -1.15
PTCD3-209	ENST00000472044	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	7.84	□□□□□ -1.15
PTCD3-209	ENST00000472044	NDUFV2	P19404	249 aa		7.83	□□□□□ -1.16
PTCD3-209	ENST00000472044	PRPF38B	Q5VTL8	546 aa	Known RBP	7.83	□□□□□ -1.16
PTCD3-209	ENST00000472044	SOWAHB	A6NEL2	793 aa		7.82	□□□□□ -1.16
PTCD3-209	ENST00000472044	GOLGA8CP	A6NN73	597 aa		7.82	□□□□□ -1.16
PTCD3-209	ENST00000472044	LILRB3	O75022	631 aa		7.82	□□□□□ -1.16
PTCD3-209	ENST00000472044	CFH	P08603	1231 aa		7.82	□□□□□ -1.16
PTCD3-209	ENST00000472044	GRIPAP1	Q4V328	841 aa		7.82	□□□□□ -1.16
PTCD3-209	ENST00000472044	ANKK1	Q8NFD2	765 aa		7.82	□□□□□ -1.16
PTCD3-209	ENST00000472044	ATP6V1A	P38606	617 aa		7.81	□□□□□ -1.16
PTCD3-209	ENST00000472044	RFC5	P40937	340 aa		7.81	□□□□□ -1.16
PTCD3-209	ENST00000472044	KMT5B	Q4FZB7	885 aa		7.81	□□□□□ -1.16
PTCD3-209	ENST00000472044	FBXO31	Q5XUX0	539 aa	Predicted RBP	7.81	□□□□□ -1.16
PTCD3-209	ENST00000472044	BANK1	Q8NDB2	785 aa		7.81	□□□□□ -1.16
PTCD3-209	ENST00000472044	ATP1B4	Q9UN42	357 aa	Predicted RBP	7.81	□□□□□ -1.16
PTCD3-209	ENST00000472044	PCDHB15	Q9Y5E8	787 aa		7.81	□□□□□ -1.16
PTCD3-209	ENST00000472044	FDX1	P10109	184 aa		7.8	□□□□□ -1.16
PTCD3-209	ENST00000472044	FUT2	Q10981	343 aa		7.8	□□□□□ -1.16
PTCD3-209	ENST00000472044	TMEM259	Q4ZIN3	620 aa		7.8	□□□□□ -1.16
PTCD3-209	ENST00000472044	PRR14	Q9BWN1	585 aa		7.8	□□□□□ -1.16
PTCD3-209	ENST00000472044	ACTN4	O43707	911 aa	Known RBP	7.79	□□□□□ -1.16
PTCD3-209	ENST00000472044	RNF40	O75150	1001 aa		7.79	□□□□□ -1.16
PTCD3-209	ENST00000472044	QPCT	Q16769	361 aa		7.79	□□□□□ -1.16
PTCD3-209	ENST00000472044	WNT2B	Q93097	391 aa		7.79	□□□□□ -1.16
PTCD3-209	ENST00000472044	ZMYND15	Q9H091	742 aa		7.79	□□□□□ -1.16
PTCD3-209	ENST00000472044	PCDHGC3	Q9UN70	934 aa		7.79	□□□□□ -1.16
PTCD3-209	ENST00000472044	PPP4C	P60510	307 aa		7.78	□□□□□ -1.16
PTCD3-209	ENST00000472044	MCM6	Q14566	821 aa		7.78	□□□□□ -1.16
PTCD3-209	ENST00000472044	ZBTB3	Q9H5J0	574 aa		7.78	□□□□□ -1.16
PTCD3-209	ENST00000472044	TSR3	Q9UJK0	312 aa	Known RBP	7.78	□□□□□ -1.16
PTCD3-209	ENST00000472044	SPDYE5	A6NIY4	337 aa		7.77	□□□□□ -1.17
PTCD3-209	ENST00000472044	HRC	P23327	699 aa		7.77	□□□□□ -1.17
PTCD3-209	ENST00000472044	MORN1	Q5T089	497 aa		7.77	□□□□□ -1.17
PTCD3-209	ENST00000472044	HPS5	Q9UPZ3	1129 aa		7.77	□□□□□ -1.17
PTCD3-209	ENST00000472044	SOCS7	O14512	581 aa		7.76	□□□□□ -1.17
PTCD3-209	ENST00000472044	BCAM	P50895	628 aa		7.76	□□□□□ -1.17
PTCD3-209	ENST00000472044	GUCA2A	Q02747	115 aa		7.76	□□□□□ -1.17
PTCD3-209	ENST00000472044	CSPP1	Q1MSJ5	1256 aa		7.76	□□□□□ -1.17
PTCD3-209	ENST00000472044	RTL5	Q5HYW3	569 aa	Predicted RBP	7.76	□□□□□ -1.17
PTCD3-209	ENST00000472044	HLA-C	Q95604	372 aa		7.76	□□□□□ -1.17
PTCD3-209	ENST00000472044	MTMR2	Q13614	643 aa		7.75	□□□□□ -1.17
PTCD3-209	ENST00000472044	CABLES1	Q8TDN4	633 aa		7.75	□□□□□ -1.17
PTCD3-209	ENST00000472044	NUTM2B	A6NNL0	878 aa	Predicted RBP	7.74	□□□□□ -1.17

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