RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 RIMS2Q9UQ26 1411 aa21.56■■□□□ 1.04
COL9A3-209ENST00000469852 POLR1AO95602 1720 aaPredicted RBP21.56■■□□□ 1.04
COL9A3-209ENST00000469852 IFT172Q9UG01 1749 aa21.56■■□□□ 1.04
COL9A3-209ENST00000469852 RGL3Q3MIN7 710 aa21.56■■□□□ 1.04
COL9A3-209ENST00000469852 PPLO60437 1756 aa21.56■■□□□ 1.04
COL9A3-209ENST00000469852 NEUROD1Q13562 356 aa21.55■■□□□ 1.04
COL9A3-209ENST00000469852 ZNF326Q5BKZ1 582 aaKnown RBP21.55■■□□□ 1.04
COL9A3-209ENST00000469852 LTKP29376 864 aa21.54■■□□□ 1.04
COL9A3-209ENST00000469852 NUTM2DQ5VT03 806 aaPredicted RBP21.54■■□□□ 1.04
COL9A3-209ENST00000469852 NCKAP5LQ9HCH0 1330 aa21.54■■□□□ 1.04
COL9A3-209ENST00000469852 SCAF11Q99590 1463 aaKnown RBP21.52■■□□□ 1.03
COL9A3-209ENST00000469852 TXNDC2Q86VQ3 553 aa21.5■■□□□ 1.03
COL9A3-209ENST00000469852 LTBP4Q8N2S1 1624 aa21.5■■□□□ 1.03
COL9A3-209ENST00000469852 CLSPNQ9HAW4 1339 aa21.49■■□□□ 1.03
COL9A3-209ENST00000469852 ANKLE2Q86XL3 938 aa21.48■■□□□ 1.03
COL9A3-209ENST00000469852 SENP3Q9H4L4 574 aaPredicted RBP21.48■■□□□ 1.03
COL9A3-209ENST00000469852 RPGRIP1LQ68CZ1 1315 aa21.47■■□□□ 1.03
COL9A3-209ENST00000469852 MED14O60244 1454 aa21.46■■□□□ 1.03
COL9A3-209ENST00000469852 EID1Q9Y6B2 187 aa21.46■■□□□ 1.03
COL9A3-209ENST00000469852 IQGAP1P46940 1657 aa21.45■■□□□ 1.02
COL9A3-209ENST00000469852 NRXN3Q9Y4C0 1643 aa21.44■■□□□ 1.02
COL9A3-209ENST00000469852 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.44■■□□□ 1.02
COL9A3-209ENST00000469852 L3MBTL2Q969R5 705 aa21.44■■□□□ 1.02
COL9A3-209ENST00000469852 ADGRF5Q8IZF2 1346 aa21.44■■□□□ 1.02
COL9A3-209ENST00000469852 NPHP4O75161 1426 aaPredicted RBP21.44■■□□□ 1.02
COL9A3-209ENST00000469852 PPP1R15AO75807 674 aaPredicted RBP21.43■■□□□ 1.02
COL9A3-209ENST00000469852 DCAF11Q8TEB1 546 aa21.43■■□□□ 1.02
COL9A3-209ENST00000469852 PLEKHG1Q9ULL1 1385 aa21.43■■□□□ 1.02
COL9A3-209ENST00000469852 MYOM2P54296 1465 aa21.43■■□□□ 1.02
COL9A3-209ENST00000469852 KDM2AQ9Y2K7 1162 aa21.41■■□□□ 1.02
COL9A3-209ENST00000469852 NRXN1Q9ULB1 1477 aa21.4■■□□□ 1.02
COL9A3-209ENST00000469852 SETBP1Q9Y6X0 1596 aa21.4■■□□□ 1.02
COL9A3-209ENST00000469852 IQSEC2Q5JU85 1478 aa21.39■■□□□ 1.02
COL9A3-209ENST00000469852 ADAMTS13Q76LX8 1427 aa21.39■■□□□ 1.02
COL9A3-209ENST00000469852 TONSLQ96HA7 1378 aa21.39■■□□□ 1.02
COL9A3-209ENST00000469852 VGFO15240 615 aaPredicted RBP21.39■■□□□ 1.01
COL9A3-209ENST00000469852 HDGFP51858 240 aaKnown RBP21.39■■□□□ 1.01
COL9A3-209ENST00000469852 SETD1AO15047 1707 aaKnown RBP21.38■■□□□ 1.01
COL9A3-209ENST00000469852 PIK3C2GO75747 1445 aa21.38■■□□□ 1.01
COL9A3-209ENST00000469852 SLC26A8Q96RN1 970 aa21.36■■□□□ 1.01
COL9A3-209ENST00000469852 BCANQ96GW7 911 aa21.35■■□□□ 1.01
COL9A3-209ENST00000469852 ZNF335Q9H4Z2 1342 aaPredicted RBP21.34■■□□□ 1.01
COL9A3-209ENST00000469852 ALKQ9UM73 1620 aa21.34■■□□□ 1.01
COL9A3-209ENST00000469852 PRAG1Q86YV5 1406 aa21.33■■□□□ 1.01
COL9A3-209ENST00000469852 DIP2AQ14689 1571 aa21.32■■□□□ 1
COL9A3-209ENST00000469852 ASXL1Q8IXJ9 1541 aa21.31■■□□□ 1
COL9A3-209ENST00000469852 DISP3Q9P2K9 1392 aa21.31■■□□□ 1
COL9A3-209ENST00000469852 STRCP1A6NGW2 1772 aa21.29■■□□□ 1
COL9A3-209ENST00000469852 METP08581 1390 aa21.29■■□□□ 1
COL9A3-209ENST00000469852 NBPF8Q3BBV2 869 aa21.29■■□□□ 1
COL9A3-209ENST00000469852 CFAP70Q5T0N1 1121 aa21.29■■□□□ 1
COL9A3-209ENST00000469852 ILDR2Q71H61 639 aa21.29■■□□□ 1
COL9A3-209ENST00000469852 STAC3Q96MF2 364 aa21.29■■□□□ 1
COL9A3-209ENST00000469852 TBX22Q9Y458 520 aa21.28■■□□□ 1
COL9A3-209ENST00000469852 LAMC1P11047 1609 aa21.28■■□□□ 1
COL9A3-209ENST00000469852 PTPRUQ92729 1446 aa21.27■■□□□ 1
COL9A3-209ENST00000469852 TRPM1Q7Z4N2 1603 aa21.26■□□□□ 0.99
COL9A3-209ENST00000469852 C14orf93Q9H972 538 aaKnown RBP21.26■□□□□ 0.99
COL9A3-209ENST00000469852 TIMELESSQ9UNS1 1208 aa21.26■□□□□ 0.99
COL9A3-209ENST00000469852 CHD2O14647 1828 aaKnown RBP21.26■□□□□ 0.99
COL9A3-209ENST00000469852 KIAA1210Q9ULL0 1709 aa21.25■□□□□ 0.99
COL9A3-209ENST00000469852 ADGRB1O14514 1584 aa21.24■□□□□ 0.99
COL9A3-209ENST00000469852 TMEM132EQ6IEE7 984 aa21.23■□□□□ 0.99
COL9A3-209ENST00000469852 NWD1Q149M9 1564 aa21.23■□□□□ 0.99
COL9A3-209ENST00000469852 XRN1Q8IZH2 1706 aaKnown RBP21.22■□□□□ 0.99
COL9A3-209ENST00000469852 NBPF1Q3BBV0 1214 aa21.21■□□□□ 0.99
COL9A3-209ENST00000469852 UBAP1LF5GYI3 381 aa21.19■□□□□ 0.98
COL9A3-209ENST00000469852 PIK3R4Q99570 1358 aa21.19■□□□□ 0.98
COL9A3-209ENST00000469852 RALGAPBQ86X10 1494 aa21.18■□□□□ 0.98
COL9A3-209ENST00000469852 KCNA6P17658 529 aa21.17■□□□□ 0.98
COL9A3-209ENST00000469852 AMOTL2Q9Y2J4 779 aa21.17■□□□□ 0.98
COL9A3-209ENST00000469852 YTHDC2Q9H6S0 1430 aaKnown RBP21.17■□□□□ 0.98
COL9A3-209ENST00000469852 KNDC1Q76NI1 1749 aa21.15■□□□□ 0.98
COL9A3-209ENST00000469852 LRPPRCP42704 1394 aaKnown RBP21.15■□□□□ 0.98
COL9A3-209ENST00000469852 STK26Q9P289 416 aa21.15■□□□□ 0.98
COL9A3-209ENST00000469852 SOCS7O14512 581 aa21.14■□□□□ 0.97
COL9A3-209ENST00000469852 ROCK2O75116 1388 aaKnown RBP21.13■□□□□ 0.97
COL9A3-209ENST00000469852 CPS1P31327 1500 aa21.13■□□□□ 0.97
COL9A3-209ENST00000469852 XIRP1Q702N8 1843 aaKnown RBP21.13■□□□□ 0.97
COL9A3-209ENST00000469852 NKTRP30414 1462 aaKnown RBP21.13■□□□□ 0.97
COL9A3-209ENST00000469852 GPRASP1Q5JY77 1395 aa21.12■□□□□ 0.97
COL9A3-209ENST00000469852 ROBO2Q9HCK4 1378 aa21.12■□□□□ 0.97
COL9A3-209ENST00000469852 TECPR2O15040 1411 aa21.12■□□□□ 0.97
COL9A3-209ENST00000469852 LRRC7Q96NW7 1537 aa21.11■□□□□ 0.97
COL9A3-209ENST00000469852 RBM33Q96EV2 1170 aaKnown RBP21.11■□□□□ 0.97
COL9A3-209ENST00000469852 ARHGEF28Q8N1W1 1705 aaKnown RBP21.11■□□□□ 0.97
COL9A3-209ENST00000469852 ABCC11Q96J66 1382 aa21.1■□□□□ 0.97
COL9A3-209ENST00000469852 PTCH1Q13635 1447 aa21.1■□□□□ 0.97
COL9A3-209ENST00000469852 TRAK1Q9UPV9 953 aa21.09■□□□□ 0.97
COL9A3-209ENST00000469852 DLC1Q96QB1 1528 aa21.08■□□□□ 0.96
COL9A3-209ENST00000469852 PLEKHH1Q9ULM0 1364 aa21.08■□□□□ 0.96
COL9A3-209ENST00000469852 WAPLQ7Z5K2 1190 aa21.06■□□□□ 0.96
COL9A3-209ENST00000469852 PROSER2Q86WR7 435 aaPredicted RBP21.06■□□□□ 0.96
COL9A3-209ENST00000469852 CARD11Q9BXL7 1154 aa21.06■□□□□ 0.96
COL9A3-209ENST00000469852 TMEM94Q12767 1356 aa21.06■□□□□ 0.96
COL9A3-209ENST00000469852 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.04■□□□□ 0.96
COL9A3-209ENST00000469852 NALCNQ8IZF0 1738 aa21.04■□□□□ 0.96
COL9A3-209ENST00000469852 PRAM1Q96QH2 718 aa21.03■□□□□ 0.96
COL9A3-209ENST00000469852 FAM135BQ49AJ0 1406 aa21.03■□□□□ 0.96
COL9A3-209ENST00000469852 TOM1O60784 492 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms