RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 FAM217BQ9NTX9 383 aaPredicted RBP11.45□□□□□ -0.58
PTCD3-208ENST00000469585 PLEKHG3A1L390 1219 aa11.44□□□□□ -0.58
PTCD3-208ENST00000469585 LSM11P83369 360 aaKnown RBP eCLIP11.44□□□□□ -0.58
PTCD3-208ENST00000469585 DDRGK1Q96HY6 314 aa11.44□□□□□ -0.58
PTCD3-208ENST00000469585 TMEM134Q9H6X4 195 aa11.44□□□□□ -0.58
PTCD3-208ENST00000469585 DAXXQ9UER7 740 aaPredicted RBP11.44□□□□□ -0.58
PTCD3-208ENST00000469585 BHMG1C9JSJ3 638 aaPredicted RBP11.43□□□□□ -0.58
PTCD3-208ENST00000469585 SEPT9Q9UHD8 586 aaPredicted RBP11.42□□□□□ -0.58
PTCD3-208ENST00000469585 ADGRD1Q6QNK2 874 aa11.4□□□□□ -0.58
PTCD3-208ENST00000469585 FAM98CQ17RN3 349 aaKnown RBP11.39□□□□□ -0.59
PTCD3-208ENST00000469585 HRO43593 1189 aa11.38□□□□□ -0.59
PTCD3-208ENST00000469585 LAPTM4BQ86VI4 370 aa11.38□□□□□ -0.59
PTCD3-208ENST00000469585 NBPF3Q9H094 633 aa11.38□□□□□ -0.59
PTCD3-208ENST00000469585 BEGAINQ9BUH8 593 aa11.37□□□□□ -0.59
PTCD3-208ENST00000469585 KRTAP3-3Q9BYR6 98 aa11.36□□□□□ -0.59
PTCD3-208ENST00000469585 KRTAP3-2Q9BYR7 98 aa11.36□□□□□ -0.59
PTCD3-208ENST00000469585 CD46P15529 392 aa11.35□□□□□ -0.59
PTCD3-208ENST00000469585 SWT1Q5T5J6 900 aaKnown RBP11.35□□□□□ -0.59
PTCD3-208ENST00000469585 ANKRD13DQ6ZTN6 518 aa11.34□□□□□ -0.59
PTCD3-208ENST00000469585 SULF1Q8IWU6 871 aa11.34□□□□□ -0.59
PTCD3-208ENST00000469585 EIF4G1Q04637 1599 aaKnown RBP11.33□□□□□ -0.6
PTCD3-208ENST00000469585 DDX11L8A8MPP1 907 aa11.33□□□□□ -0.6
PTCD3-208ENST00000469585 MRPL50Q8N5N7 158 aaKnown RBP11.32□□□□□ -0.6
PTCD3-208ENST00000469585 ZFRQ96KR1 1074 aaKnown RBP11.32□□□□□ -0.6
PTCD3-208ENST00000469585 GOPCQ9HD26 462 aa11.32□□□□□ -0.6
PTCD3-208ENST00000469585 SAMD7Q7Z3H4 446 aa11.31□□□□□ -0.6
PTCD3-208ENST00000469585 GTF3C3Q9Y5Q9 886 aa11.31□□□□□ -0.6
PTCD3-208ENST00000469585 POTEGQ6S5H5 508 aa11.3□□□□□ -0.6
PTCD3-208ENST00000469585 SLC10A3P09131 477 aa11.29□□□□□ -0.6
PTCD3-208ENST00000469585 SH3D19Q5HYK7 790 aa11.29□□□□□ -0.6
PTCD3-208ENST00000469585 POTEMA6NI47 508 aa11.28□□□□□ -0.6
PTCD3-208ENST00000469585 HDGFP51858 240 aaKnown RBP11.28□□□□□ -0.6
PTCD3-208ENST00000469585 CC2D2AQ9P2K1 1620 aa11.27□□□□□ -0.6
PTCD3-208ENST00000469585 RSPH6AQ9H0K4 717 aa11.27□□□□□ -0.61
PTCD3-208ENST00000469585 SLF2Q8IX21 1173 aa11.26□□□□□ -0.61
PTCD3-208ENST00000469585 RDH13Q8NBN7 331 aa11.26□□□□□ -0.61
PTCD3-208ENST00000469585 SPIRE2Q8WWL2 714 aa11.26□□□□□ -0.61
PTCD3-208ENST00000469585 TBC1D2Q9BYX2 928 aa11.26□□□□□ -0.61
PTCD3-208ENST00000469585 MYSM1Q5VVJ2 828 aa11.25□□□□□ -0.61
PTCD3-208ENST00000469585 CDAN1Q8IWY9 1227 aa11.25□□□□□ -0.61
PTCD3-208ENST00000469585 CECR2Q9BXF3 1484 aa11.25□□□□□ -0.61
PTCD3-208ENST00000469585 GCGRP47871 477 aa11.24□□□□□ -0.61
PTCD3-208ENST00000469585 SKIV2LQ15477 1246 aaKnown RBP11.24□□□□□ -0.61
PTCD3-208ENST00000469585 DIXDC1Q155Q3 683 aa11.24□□□□□ -0.61
PTCD3-208ENST00000469585 RSPH4AQ5TD94 716 aa11.24□□□□□ -0.61
PTCD3-208ENST00000469585 PLSCR2Q9NRY7 297 aa11.24□□□□□ -0.61
PTCD3-208ENST00000469585 STAC3Q96MF2 364 aa11.23□□□□□ -0.61
PTCD3-208ENST00000469585 LRCH3Q96II8 777 aa11.22□□□□□ -0.61
PTCD3-208ENST00000469585 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.22□□□□□ -0.61
PTCD3-208ENST00000469585 BAZ1AQ9NRL2 1556 aaPredicted RBP11.21□□□□□ -0.61
PTCD3-208ENST00000469585 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
PTCD3-208ENST00000469585 NUTM1Q86Y26 1132 aa11.21□□□□□ -0.61
PTCD3-208ENST00000469585 PCMTD1Q96MG8 357 aaPredicted RBP11.21□□□□□ -0.61
PTCD3-208ENST00000469585 GOLGA8CPA6NN73 597 aa11.2□□□□□ -0.62
PTCD3-208ENST00000469585 KDM4AO75164 1064 aa11.2□□□□□ -0.62
PTCD3-208ENST00000469585 ANKK1Q8NFD2 765 aa11.2□□□□□ -0.62
PTCD3-208ENST00000469585 POLR3EQ9NVU0 708 aa11.2□□□□□ -0.62
PTCD3-208ENST00000469585 SOWAHBA6NEL2 793 aa11.19□□□□□ -0.62
PTCD3-208ENST00000469585 RNF40O75150 1001 aa11.19□□□□□ -0.62
PTCD3-208ENST00000469585 CLK2P49760 499 aaKnown RBP11.19□□□□□ -0.62
PTCD3-208ENST00000469585 PROCA1Q8NCQ7 364 aaPredicted RBP11.18□□□□□ -0.62
PTCD3-208ENST00000469585 WNT2BQ93097 391 aa11.18□□□□□ -0.62
PTCD3-208ENST00000469585 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.18□□□□□ -0.62
PTCD3-208ENST00000469585 LIMD1Q9UGP4 676 aa11.18□□□□□ -0.62
PTCD3-208ENST00000469585 SMARCA2P51531 1590 aa11.17□□□□□ -0.62
PTCD3-208ENST00000469585 MOXD2PA6NHM9 499 aa11.17□□□□□ -0.62
PTCD3-208ENST00000469585 CFHP08603 1231 aa11.17□□□□□ -0.62
PTCD3-208ENST00000469585 USP46P62068 366 aa11.17□□□□□ -0.62
PTCD3-208ENST00000469585 SPTLC1O15269 473 aa11.16□□□□□ -0.62
PTCD3-208ENST00000469585 HOXA2O43364 376 aa11.16□□□□□ -0.62
PTCD3-208ENST00000469585 BCAMP50895 628 aa11.16□□□□□ -0.62
PTCD3-208ENST00000469585 RSBN1LQ6PCB5 846 aaPredicted RBP11.16□□□□□ -0.62
PTCD3-208ENST00000469585 RIC3Q7Z5B4 369 aa11.16□□□□□ -0.62
PTCD3-208ENST00000469585 SMARCA4P51532 1647 aa11.16□□□□□ -0.62
PTCD3-208ENST00000469585 NDUFV2P19404 249 aa11.15□□□□□ -0.62
PTCD3-208ENST00000469585 GJA5P36382 358 aa11.15□□□□□ -0.62
PTCD3-208ENST00000469585 TUSC1Q2TAM9 212 aa11.15□□□□□ -0.62
PTCD3-208ENST00000469585 NECTIN2Q92692 538 aa11.15□□□□□ -0.62
PTCD3-208ENST00000469585 HPS5Q9UPZ3 1129 aa11.14□□□□□ -0.63
PTCD3-208ENST00000469585 FUT2Q10981 343 aa11.13□□□□□ -0.63
PTCD3-208ENST00000469585 PPP4CP60510 307 aa11.12□□□□□ -0.63
PTCD3-208ENST00000469585 KMT5BQ4FZB7 885 aa11.12□□□□□ -0.63
PTCD3-208ENST00000469585 TSR3Q9UJK0 312 aaKnown RBP11.12□□□□□ -0.63
PTCD3-208ENST00000469585 ACTN4O43707 911 aaKnown RBP11.11□□□□□ -0.63
PTCD3-208ENST00000469585 FBXO31Q5XUX0 539 aaPredicted RBP11.11□□□□□ -0.63
PTCD3-208ENST00000469585 THSD4Q6ZMP0 1018 aa11.11□□□□□ -0.63
PTCD3-208ENST00000469585 HLA-CQ95604 372 aa11.11□□□□□ -0.63
PTCD3-208ENST00000469585 PCDHB15Q9Y5E8 787 aa11.1□□□□□ -0.63
PTCD3-208ENST00000469585 ATP6V1AP38606 617 aa11.09□□□□□ -0.63
PTCD3-208ENST00000469585 APLP1P51693 650 aa11.09□□□□□ -0.63
PTCD3-208ENST00000469585 GUCA2AQ02747 115 aa11.09□□□□□ -0.63
PTCD3-208ENST00000469585 PCDHGC3Q9UN70 934 aa11.09□□□□□ -0.63
PTCD3-208ENST00000469585 BAZ1BQ9UIG0 1483 aaKnown RBP11.08□□□□□ -0.64
PTCD3-208ENST00000469585 FDX1P10109 184 aa11.08□□□□□ -0.64
PTCD3-208ENST00000469585 GRIPAP1Q4V328 841 aa11.08□□□□□ -0.64
PTCD3-208ENST00000469585 PPP2R2DQ66LE6 453 aa11.08□□□□□ -0.64
PTCD3-208ENST00000469585 KCTD12Q96CX2 325 aaKnown RBP11.08□□□□□ -0.64
PTCD3-208ENST00000469585 PRR14Q9BWN1 585 aa11.08□□□□□ -0.64
PTCD3-208ENST00000469585 WBP1LQ9NX94 342 aa11.08□□□□□ -0.64
PTCD3-208ENST00000469585 NCAPD3P42695 1498 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 929.3 ms