RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 RIMS2Q9UQ26 1411 aa22.05■■□□□ 1.12
NPHP4-205ENST00000466897 MYOM2P54296 1465 aa22.04■■□□□ 1.12
NPHP4-205ENST00000466897 SCAF11Q99590 1463 aaKnown RBP22.03■■□□□ 1.12
NPHP4-205ENST00000466897 HDGFP51858 240 aaKnown RBP22.02■■□□□ 1.12
NPHP4-205ENST00000466897 STAC3Q96MF2 364 aa22.02■■□□□ 1.12
NPHP4-205ENST00000466897 MED14O60244 1454 aa22.02■■□□□ 1.12
NPHP4-205ENST00000466897 ZNF326Q5BKZ1 582 aaKnown RBP22.01■■□□□ 1.11
NPHP4-205ENST00000466897 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.01■■□□□ 1.11
NPHP4-205ENST00000466897 TIMELESSQ9UNS1 1208 aa22■■□□□ 1.11
NPHP4-205ENST00000466897 IQGAP1P46940 1657 aa21.99■■□□□ 1.11
NPHP4-205ENST00000466897 NRXN1Q9ULB1 1477 aa21.99■■□□□ 1.11
NPHP4-205ENST00000466897 NEUROD1Q13562 356 aa21.99■■□□□ 1.11
NPHP4-205ENST00000466897 RGL3Q3MIN7 710 aa21.98■■□□□ 1.11
NPHP4-205ENST00000466897 EID1Q9Y6B2 187 aa21.98■■□□□ 1.11
NPHP4-205ENST00000466897 SETBP1Q9Y6X0 1596 aa21.98■■□□□ 1.11
NPHP4-205ENST00000466897 TONSLQ96HA7 1378 aa21.98■■□□□ 1.11
NPHP4-205ENST00000466897 ANKLE2Q86XL3 938 aa21.97■■□□□ 1.11
NPHP4-205ENST00000466897 LAMC1P11047 1609 aa21.96■■□□□ 1.11
NPHP4-205ENST00000466897 NRXN3Q9Y4C0 1643 aa21.96■■□□□ 1.11
NPHP4-205ENST00000466897 VGFO15240 615 aaPredicted RBP21.96■■□□□ 1.11
NPHP4-205ENST00000466897 HSPA2P54652 639 aa21.96■■□□□ 1.11
NPHP4-205ENST00000466897 PLEKHG1Q9ULL1 1385 aa21.96■■□□□ 1.11
NPHP4-205ENST00000466897 TXNDC2Q86VQ3 553 aa21.95■■□□□ 1.1
NPHP4-205ENST00000466897 DIP2AQ14689 1571 aa21.95■■□□□ 1.1
NPHP4-205ENST00000466897 KIAA1210Q9ULL0 1709 aa21.94■■□□□ 1.1
NPHP4-205ENST00000466897 LTKP29376 864 aa21.94■■□□□ 1.1
NPHP4-205ENST00000466897 SETD1AO15047 1707 aaKnown RBP21.94■■□□□ 1.1
NPHP4-205ENST00000466897 PIK3C2GO75747 1445 aa21.93■■□□□ 1.1
NPHP4-205ENST00000466897 L3MBTL2Q969R5 705 aa21.93■■□□□ 1.1
NPHP4-205ENST00000466897 NPHP4O75161 1426 aaPredicted RBP21.91■■□□□ 1.1
NPHP4-205ENST00000466897 DCAF11Q8TEB1 546 aa21.91■■□□□ 1.1
NPHP4-205ENST00000466897 PPP1R15AO75807 674 aaPredicted RBP21.9■■□□□ 1.1
NPHP4-205ENST00000466897 PRAG1Q86YV5 1406 aa21.89■■□□□ 1.09
NPHP4-205ENST00000466897 NCKAP5LQ9HCH0 1330 aa21.88■■□□□ 1.09
NPHP4-205ENST00000466897 ALKQ9UM73 1620 aa21.88■■□□□ 1.09
NPHP4-205ENST00000466897 ADGRF5Q8IZF2 1346 aa21.87■■□□□ 1.09
NPHP4-205ENST00000466897 ADAMTS13Q76LX8 1427 aa21.87■■□□□ 1.09
NPHP4-205ENST00000466897 TRPM1Q7Z4N2 1603 aa21.87■■□□□ 1.09
NPHP4-205ENST00000466897 NUTM2DQ5VT03 806 aaPredicted RBP21.85■■□□□ 1.09
NPHP4-205ENST00000466897 DMRT2Q9Y5R5 561 aa21.84■■□□□ 1.09
NPHP4-205ENST00000466897 KDM2AQ9Y2K7 1162 aa21.82■■□□□ 1.08
NPHP4-205ENST00000466897 CHD2O14647 1828 aaKnown RBP21.82■■□□□ 1.08
NPHP4-205ENST00000466897 TBX22Q9Y458 520 aa21.81■■□□□ 1.08
NPHP4-205ENST00000466897 PIK3R4Q99570 1358 aa21.8■■□□□ 1.08
NPHP4-205ENST00000466897 C14orf93Q9H972 538 aaKnown RBP21.79■■□□□ 1.08
NPHP4-205ENST00000466897 ASXL1Q8IXJ9 1541 aa21.79■■□□□ 1.08
NPHP4-205ENST00000466897 ADGRB1O14514 1584 aa21.78■■□□□ 1.08
NPHP4-205ENST00000466897 NWD1Q149M9 1564 aa21.78■■□□□ 1.08
NPHP4-205ENST00000466897 KNDC1Q76NI1 1749 aa21.78■■□□□ 1.08
NPHP4-205ENST00000466897 RALGAPBQ86X10 1494 aa21.77■■□□□ 1.08
NPHP4-205ENST00000466897 XRN1Q8IZH2 1706 aaKnown RBP21.77■■□□□ 1.08
NPHP4-205ENST00000466897 BCANQ96GW7 911 aa21.75■■□□□ 1.07
NPHP4-205ENST00000466897 NBPF8Q3BBV2 869 aa21.74■■□□□ 1.07
NPHP4-205ENST00000466897 SLC26A8Q96RN1 970 aa21.74■■□□□ 1.07
NPHP4-205ENST00000466897 STRCP1A6NGW2 1772 aa21.73■■□□□ 1.07
NPHP4-205ENST00000466897 METP08581 1390 aa21.73■■□□□ 1.07
NPHP4-205ENST00000466897 GPRASP1Q5JY77 1395 aa21.73■■□□□ 1.07
NPHP4-205ENST00000466897 CFAP70Q5T0N1 1121 aa21.72■■□□□ 1.07
NPHP4-205ENST00000466897 ZEB1P37275 1124 aaPredicted RBP21.7■■□□□ 1.06
NPHP4-205ENST00000466897 TECPR2O15040 1411 aa21.7■■□□□ 1.06
NPHP4-205ENST00000466897 NKTRP30414 1462 aaKnown RBP21.7■■□□□ 1.06
NPHP4-205ENST00000466897 CPS1P31327 1500 aa21.7■■□□□ 1.06
NPHP4-205ENST00000466897 ARHGEF28Q8N1W1 1705 aaKnown RBP21.69■■□□□ 1.06
NPHP4-205ENST00000466897 LRPPRCP42704 1394 aaKnown RBP21.68■■□□□ 1.06
NPHP4-205ENST00000466897 PTPRUQ92729 1446 aa21.68■■□□□ 1.06
NPHP4-205ENST00000466897 YTHDC2Q9H6S0 1430 aaKnown RBP21.68■■□□□ 1.06
NPHP4-205ENST00000466897 DLC1Q96QB1 1528 aa21.68■■□□□ 1.06
NPHP4-205ENST00000466897 ROCK2O75116 1388 aaKnown RBP21.67■■□□□ 1.06
NPHP4-205ENST00000466897 PTCH1Q13635 1447 aa21.66■■□□□ 1.06
NPHP4-205ENST00000466897 ABCC11Q96J66 1382 aa21.66■■□□□ 1.06
NPHP4-205ENST00000466897 KCNA6P17658 529 aa21.65■■□□□ 1.06
NPHP4-205ENST00000466897 ILDR1Q86SU0 546 aaPredicted RBP21.65■■□□□ 1.06
NPHP4-205ENST00000466897 SENP3Q9H4L4 574 aaPredicted RBP21.65■■□□□ 1.06
NPHP4-205ENST00000466897 NBPF1Q3BBV0 1214 aa21.63■■□□□ 1.05
NPHP4-205ENST00000466897 LTBP4Q8N2S1 1624 aa21.62■■□□□ 1.05
NPHP4-205ENST00000466897 TMEM132EQ6IEE7 984 aa21.62■■□□□ 1.05
NPHP4-205ENST00000466897 FAM135BQ49AJ0 1406 aa21.62■■□□□ 1.05
NPHP4-205ENST00000466897 SIRT1Q96EB6 747 aa21.61■■□□□ 1.05
NPHP4-205ENST00000466897 XIRP1Q702N8 1843 aaKnown RBP21.61■■□□□ 1.05
NPHP4-205ENST00000466897 AMOTL2Q9Y2J4 779 aa21.6■■□□□ 1.05
NPHP4-205ENST00000466897 ZNF335Q9H4Z2 1342 aaPredicted RBP21.59■■□□□ 1.05
NPHP4-205ENST00000466897 FBXO41Q8TF61 875 aa21.58■■□□□ 1.05
NPHP4-205ENST00000466897 NCOA3Q9Y6Q9 1424 aa21.57■■□□□ 1.04
NPHP4-205ENST00000466897 CERKQ8TCT0 537 aa21.57■■□□□ 1.04
NPHP4-205ENST00000466897 CARD11Q9BXL7 1154 aa21.57■■□□□ 1.04
NPHP4-205ENST00000466897 EIF3AQ14152 1382 aaKnown RBP21.56■■□□□ 1.04
NPHP4-205ENST00000466897 ROBO2Q9HCK4 1378 aa21.56■■□□□ 1.04
NPHP4-205ENST00000466897 QRICH2Q9H0J4 1663 aa21.56■■□□□ 1.04
NPHP4-205ENST00000466897 LRRC7Q96NW7 1537 aa21.55■■□□□ 1.04
NPHP4-205ENST00000466897 NALCNQ8IZF0 1738 aa21.55■■□□□ 1.04
NPHP4-205ENST00000466897 ADGRB2O60241 1585 aa21.53■■□□□ 1.04
NPHP4-205ENST00000466897 STK26Q9P289 416 aa21.53■■□□□ 1.04
NPHP4-205ENST00000466897 TRAK1Q9UPV9 953 aa21.52■■□□□ 1.04
NPHP4-205ENST00000466897 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.52■■□□□ 1.03
NPHP4-205ENST00000466897 IQSEC2Q5JU85 1478 aa21.51■■□□□ 1.03
NPHP4-205ENST00000466897 USP47Q96K76 1375 aa21.5■■□□□ 1.03
NPHP4-205ENST00000466897 SBNO2Q9Y2G9 1366 aa21.49■■□□□ 1.03
NPHP4-205ENST00000466897 ADGRL3Q9HAR2 1447 aa21.48■■□□□ 1.03
NPHP4-205ENST00000466897 CDC42BPGQ6DT37 1551 aa21.48■■□□□ 1.03
NPHP4-205ENST00000466897 TMEM94Q12767 1356 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms