RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 TESK2Q96S53 571 aa25.2■■□□□ 1.62
COL9A3-205ENST00000466192 ADGRF5Q8IZF2 1346 aa25.18■■□□□ 1.62
COL9A3-205ENST00000466192 AGLP35573 1532 aa25.17■■□□□ 1.62
COL9A3-205ENST00000466192 CHGAP10645 457 aaKnown RBP25.17■■□□□ 1.62
COL9A3-205ENST00000466192 NRXN1Q9ULB1 1477 aa25.16■■□□□ 1.62
COL9A3-205ENST00000466192 PREX1Q8TCU6 1659 aa25.16■■□□□ 1.62
COL9A3-205ENST00000466192 DISP3Q9P2K9 1392 aa25.15■■□□□ 1.62
COL9A3-205ENST00000466192 SCAF11Q99590 1463 aaKnown RBP25.14■■□□□ 1.62
COL9A3-205ENST00000466192 ARHGEF40Q8TER5 1519 aa25.13■■□□□ 1.61
COL9A3-205ENST00000466192 CCDC184Q52MB2 194 aa25.12■■□□□ 1.61
COL9A3-205ENST00000466192 CFAP70Q5T0N1 1121 aa25.12■■□□□ 1.61
COL9A3-205ENST00000466192 MYO5BQ9ULV0 1848 aa25.09■■□□□ 1.61
COL9A3-205ENST00000466192 CLTCQ00610 1675 aaKnown RBP25.08■■□□□ 1.61
COL9A3-205ENST00000466192 TMF1P82094 1093 aa25.07■■□□□ 1.6
COL9A3-205ENST00000466192 RPGRIP1LQ68CZ1 1315 aa25.07■■□□□ 1.6
COL9A3-205ENST00000466192 IDI1Q13907 227 aa25.06■■□□□ 1.6
COL9A3-205ENST00000466192 PIK3C2GO75747 1445 aa25.06■■□□□ 1.6
COL9A3-205ENST00000466192 NEXMIFQ5QGS0 1516 aa25.04■■□□□ 1.6
COL9A3-205ENST00000466192 PPP6R1Q9UPN7 881 aa25.04■■□□□ 1.6
COL9A3-205ENST00000466192 SLC52A1Q9NWF4 448 aa25.04■■□□□ 1.6
COL9A3-205ENST00000466192 SETBP1Q9Y6X0 1596 aa25.03■■□□□ 1.6
COL9A3-205ENST00000466192 CNGB1Q14028 1251 aaPredicted RBP25.03■■□□□ 1.6
COL9A3-205ENST00000466192 EIF3AQ14152 1382 aaKnown RBP25.03■■□□□ 1.6
COL9A3-205ENST00000466192 FBXO31Q5XUX0 539 aaPredicted RBP25.02■■□□□ 1.6
COL9A3-205ENST00000466192 MRS2Q9HD23 443 aa25.02■■□□□ 1.6
COL9A3-205ENST00000466192 ERVK-7P63135 1459 aa25.02■■□□□ 1.6
COL9A3-205ENST00000466192 TMEM131LA2VDJ0 1609 aa25.02■■□□□ 1.6
COL9A3-205ENST00000466192 MLECQ14165 292 aa24.99■■□□□ 1.59
COL9A3-205ENST00000466192 HNRNPUQ00839 825 aaKnown RBP eCLIP24.98■■□□□ 1.59
COL9A3-205ENST00000466192 C14orf93Q9H972 538 aaKnown RBP24.98■■□□□ 1.59
COL9A3-205ENST00000466192 MYO3AQ8NEV4 1616 aa24.98■■□□□ 1.59
COL9A3-205ENST00000466192 ADGRB1O14514 1584 aa24.97■■□□□ 1.59
COL9A3-205ENST00000466192 PER1O15534 1290 aaPredicted RBP24.96■■□□□ 1.59
COL9A3-205ENST00000466192 NUTM2DQ5VT03 806 aaPredicted RBP24.96■■□□□ 1.59
COL9A3-205ENST00000466192 VGFO15240 615 aaPredicted RBP24.94■■□□□ 1.58
COL9A3-205ENST00000466192 FAM9BQ8IZU0 186 aa24.94■■□□□ 1.58
COL9A3-205ENST00000466192 SPATA31D1Q6ZQQ2 1576 aa24.93■■□□□ 1.58
COL9A3-205ENST00000466192 PANK3Q9H999 370 aa24.93■■□□□ 1.58
COL9A3-205ENST00000466192 KDM5AP29375 1690 aaKnown RBP24.92■■□□□ 1.58
COL9A3-205ENST00000466192 MYOM1P52179 1685 aa24.92■■□□□ 1.58
COL9A3-205ENST00000466192 KTN1Q86UP2 1357 aaKnown RBP24.92■■□□□ 1.58
COL9A3-205ENST00000466192 ZFYVE9O95405 1425 aa24.91■■□□□ 1.58
COL9A3-205ENST00000466192 CDCA8Q53HL2 280 aa24.9■■□□□ 1.58
COL9A3-205ENST00000466192 SUPT16HQ9Y5B9 1047 aaKnown RBP24.9■■□□□ 1.58
COL9A3-205ENST00000466192 RALBP1Q15311 655 aa24.9■■□□□ 1.58
COL9A3-205ENST00000466192 TMEM132EQ6IEE7 984 aa24.9■■□□□ 1.58
COL9A3-205ENST00000466192 QRICH2Q9H0J4 1663 aa24.87■■□□□ 1.57
COL9A3-205ENST00000466192 PARD3Q8TEW0 1356 aa24.87■■□□□ 1.57
COL9A3-205ENST00000466192 TRAK1Q9UPV9 953 aa24.87■■□□□ 1.57
COL9A3-205ENST00000466192 SBNO2Q9Y2G9 1366 aa24.86■■□□□ 1.57
COL9A3-205ENST00000466192 MYBBP1AQ9BQG0 1328 aaKnown RBP24.86■■□□□ 1.57
COL9A3-205ENST00000466192 SLC24A1O60721 1099 aa24.85■■□□□ 1.57
COL9A3-205ENST00000466192 CENPJQ9HC77 1338 aaPredicted RBP24.85■■□□□ 1.57
COL9A3-205ENST00000466192 ARHGEF28Q8N1W1 1705 aaKnown RBP24.84■■□□□ 1.57
COL9A3-205ENST00000466192 ZMYM3Q14202 1370 aa24.84■■□□□ 1.57
COL9A3-205ENST00000466192 ESF1Q9H501 851 aaKnown RBP24.82■■□□□ 1.56
COL9A3-205ENST00000466192 ASXL1Q8IXJ9 1541 aa24.81■■□□□ 1.56
COL9A3-205ENST00000466192 A2ML1A8K2U0 1454 aa24.81■■□□□ 1.56
COL9A3-205ENST00000466192 BRD4O60885 1362 aaPredicted RBP24.81■■□□□ 1.56
COL9A3-205ENST00000466192 STAG3Q9UJ98 1225 aa24.81■■□□□ 1.56
COL9A3-205ENST00000466192 TMC1Q8TDI8 760 aa24.8■■□□□ 1.56
COL9A3-205ENST00000466192 CC2D1BQ5T0F9 858 aaKnown RBP24.8■■□□□ 1.56
COL9A3-205ENST00000466192 PNISRQ8TF01 805 aaKnown RBP24.78■■□□□ 1.56
COL9A3-205ENST00000466192 SENP3Q9H4L4 574 aaPredicted RBP24.78■■□□□ 1.56
COL9A3-205ENST00000466192 TRHP20396 242 aaPredicted RBP24.77■■□□□ 1.56
COL9A3-205ENST00000466192 NLRP13Q86W25 1043 aa24.75■■□□□ 1.55
COL9A3-205ENST00000466192 FKBP8Q14318 412 aa24.74■■□□□ 1.55
COL9A3-205ENST00000466192 KNSTRNQ9Y448 316 aa24.74■■□□□ 1.55
COL9A3-205ENST00000466192 ALKQ9UM73 1620 aa24.74■■□□□ 1.55
COL9A3-205ENST00000466192 AMER1Q5JTC6 1135 aaPredicted RBP24.72■■□□□ 1.55
COL9A3-205ENST00000466192 RIMS2Q9UQ26 1411 aa24.71■■□□□ 1.55
COL9A3-205ENST00000466192 ZBED9Q6R2W3 1325 aa24.71■■□□□ 1.55
COL9A3-205ENST00000466192 LRPPRCP42704 1394 aaKnown RBP24.7■■□□□ 1.54
COL9A3-205ENST00000466192 NEFLP07196 543 aa24.69■■□□□ 1.54
COL9A3-205ENST00000466192 STK26Q9P289 416 aa24.69■■□□□ 1.54
COL9A3-205ENST00000466192 TNRQ92752 1358 aa24.68■■□□□ 1.54
COL9A3-205ENST00000466192 SETD1AO15047 1707 aaKnown RBP24.68■■□□□ 1.54
COL9A3-205ENST00000466192 TULP4Q9NRJ4 1543 aa24.68■■□□□ 1.54
COL9A3-205ENST00000466192 YTHDC2Q9H6S0 1430 aaKnown RBP24.67■■□□□ 1.54
COL9A3-205ENST00000466192 PTPRMP28827 1452 aa24.67■■□□□ 1.54
COL9A3-205ENST00000466192 UBR1Q8IWV7 1749 aa24.65■■□□□ 1.54
COL9A3-205ENST00000466192 NPC1L1Q9UHC9 1359 aa24.65■■□□□ 1.54
COL9A3-205ENST00000466192 BCANQ96GW7 911 aa24.64■■□□□ 1.54
COL9A3-205ENST00000466192 CARD14Q9BXL6 1004 aa24.64■■□□□ 1.54
COL9A3-205ENST00000466192 NRXN3Q9Y4C0 1643 aa24.63■■□□□ 1.53
COL9A3-205ENST00000466192 FER1L4A9Z1Z3 1794 aa24.63■■□□□ 1.53
COL9A3-205ENST00000466192 EVC2Q86UK5 1308 aa24.62■■□□□ 1.53
COL9A3-205ENST00000466192 C3P01024 1663 aa24.62■■□□□ 1.53
COL9A3-205ENST00000466192 SAFB2Q14151 953 aaKnown RBP eCLIP24.62■■□□□ 1.53
COL9A3-205ENST00000466192 SLC12A5Q9H2X9 1139 aa24.6■■□□□ 1.53
COL9A3-205ENST00000466192 PPP2R1AP30153 589 aa24.59■■□□□ 1.53
COL9A3-205ENST00000466192 PUS7Q96PZ0 661 aaKnown RBP24.59■■□□□ 1.53
COL9A3-205ENST00000466192 CEBPAP49715 358 aaPredicted RBP24.59■■□□□ 1.53
COL9A3-205ENST00000466192 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.59■■□□□ 1.53
COL9A3-205ENST00000466192 PRAM1Q96QH2 718 aa24.59■■□□□ 1.53
COL9A3-205ENST00000466192 SENP3-EIF4A1A0A087X0R7 540 aa24.57■■□□□ 1.52
COL9A3-205ENST00000466192 CABP2Q9NPB3 220 aa24.55■■□□□ 1.52
COL9A3-205ENST00000466192 POGKQ9P215 609 aa24.54■■□□□ 1.52
COL9A3-205ENST00000466192 TMEM2Q9UHN6 1383 aa24.54■■□□□ 1.52
COL9A3-205ENST00000466192 DLC1Q96QB1 1528 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms