RNA–Protein interactions for RNA: ENST00000465560.5

PTCD3-206, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 747 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-206ENST00000465560 TXNDC2Q86VQ3 553 aa29.9■■■□□ 2.38
PTCD3-206ENST00000465560 ANKRD30BQ9BXX2 1392 aa29.88■■■□□ 2.37
PTCD3-206ENST00000465560 NEXMIFQ5QGS0 1516 aa29.84■■■□□ 2.37
PTCD3-206ENST00000465560 HDGFP51858 240 aaKnown RBP29.82■■■□□ 2.36
PTCD3-206ENST00000465560 SPATA31E1Q6ZUB1 1445 aa29.81■■■□□ 2.36
PTCD3-206ENST00000465560 ZNF326Q5BKZ1 582 aaKnown RBP29.81■■■□□ 2.36
PTCD3-206ENST00000465560 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.81■■■□□ 2.36
PTCD3-206ENST00000465560 PPLO60437 1756 aa29.81■■■□□ 2.36
PTCD3-206ENST00000465560 PCGF6Q9BYE7 350 aa29.79■■■□□ 2.36
PTCD3-206ENST00000465560 IFT172Q9UG01 1749 aa29.78■■■□□ 2.36
PTCD3-206ENST00000465560 PLEKHG1Q9ULL1 1385 aa29.77■■■□□ 2.36
PTCD3-206ENST00000465560 PPP1R15AO75807 674 aaPredicted RBP29.77■■■□□ 2.36
PTCD3-206ENST00000465560 DHX57Q6P158 1386 aaKnown RBP29.76■■■□□ 2.35
PTCD3-206ENST00000465560 RPGRIP1LQ68CZ1 1315 aa29.73■■■□□ 2.35
PTCD3-206ENST00000465560 NUTM2DQ5VT03 806 aaPredicted RBP29.73■■■□□ 2.35
PTCD3-206ENST00000465560 LTBP4Q8N2S1 1624 aa29.71■■■□□ 2.35
PTCD3-206ENST00000465560 NRXN3Q9Y4C0 1643 aa29.71■■■□□ 2.35
PTCD3-206ENST00000465560 DIP2AQ14689 1571 aa29.69■■■□□ 2.34
PTCD3-206ENST00000465560 SETBP1Q9Y6X0 1596 aa29.69■■■□□ 2.34
PTCD3-206ENST00000465560 ZNF335Q9H4Z2 1342 aaPredicted RBP29.68■■■□□ 2.34
PTCD3-206ENST00000465560 RGL3Q3MIN7 710 aa29.67■■■□□ 2.34
PTCD3-206ENST00000465560 STRCP1A6NGW2 1772 aa29.67■■■□□ 2.34
PTCD3-206ENST00000465560 BCANQ96GW7 911 aa29.66■■■□□ 2.34
PTCD3-206ENST00000465560 ADAMTS13Q76LX8 1427 aa29.65■■■□□ 2.34
PTCD3-206ENST00000465560 VGFO15240 615 aaPredicted RBP29.64■■■□□ 2.34
PTCD3-206ENST00000465560 SLC26A8Q96RN1 970 aa29.64■■■□□ 2.34
PTCD3-206ENST00000465560 SENP3Q9H4L4 574 aaPredicted RBP29.62■■■□□ 2.33
PTCD3-206ENST00000465560 CHD2O14647 1828 aaKnown RBP29.61■■■□□ 2.33
PTCD3-206ENST00000465560 CPS1P31327 1500 aa29.61■■■□□ 2.33
PTCD3-206ENST00000465560 SETD1AO15047 1707 aaKnown RBP29.59■■■□□ 2.33
PTCD3-206ENST00000465560 TBX22Q9Y458 520 aa29.59■■■□□ 2.33
PTCD3-206ENST00000465560 MYOM2P54296 1465 aa29.59■■■□□ 2.33
PTCD3-206ENST00000465560 NWD1Q149M9 1564 aa29.59■■■□□ 2.33
PTCD3-206ENST00000465560 ADGRF5Q8IZF2 1346 aa29.54■■■□□ 2.32
PTCD3-206ENST00000465560 NRXN1Q9ULB1 1477 aa29.54■■■□□ 2.32
PTCD3-206ENST00000465560 PIK3R4Q99570 1358 aa29.53■■■□□ 2.32
PTCD3-206ENST00000465560 ALKQ9UM73 1620 aa29.53■■■□□ 2.32
PTCD3-206ENST00000465560 PIK3C2GO75747 1445 aa29.52■■■□□ 2.32
PTCD3-206ENST00000465560 CERKQ8TCT0 537 aa29.51■■■□□ 2.31
PTCD3-206ENST00000465560 IQSEC2Q5JU85 1478 aa29.5■■■□□ 2.31
PTCD3-206ENST00000465560 KCNA6P17658 529 aa29.5■■■□□ 2.31
PTCD3-206ENST00000465560 NKTRP30414 1462 aaKnown RBP29.49■■■□□ 2.31
PTCD3-206ENST00000465560 SIN3AQ96ST3 1273 aa29.49■■■□□ 2.31
PTCD3-206ENST00000465560 LAMC1P11047 1609 aa29.49■■■□□ 2.31
PTCD3-206ENST00000465560 XRN1Q8IZH2 1706 aaKnown RBP29.48■■■□□ 2.31
PTCD3-206ENST00000465560 LRRC7Q96NW7 1537 aa29.47■■■□□ 2.31
PTCD3-206ENST00000465560 XIRP1Q702N8 1843 aaKnown RBP29.47■■■□□ 2.31
PTCD3-206ENST00000465560 DCAF11Q8TEB1 546 aa29.46■■■□□ 2.31
PTCD3-206ENST00000465560 STAC3Q96MF2 364 aa29.46■■■□□ 2.31
PTCD3-206ENST00000465560 METP08581 1390 aa29.46■■■□□ 2.31
PTCD3-206ENST00000465560 PTPRUQ92729 1446 aa29.45■■■□□ 2.3
PTCD3-206ENST00000465560 NEUROD1Q13562 356 aa29.42■■■□□ 2.3
PTCD3-206ENST00000465560 KDM2AQ9Y2K7 1162 aa29.4■■■□□ 2.3
PTCD3-206ENST00000465560 ASXL1Q8IXJ9 1541 aa29.4■■■□□ 2.3
PTCD3-206ENST00000465560 AMOTL2Q9Y2J4 779 aa29.38■■■□□ 2.29
PTCD3-206ENST00000465560 C14orf93Q9H972 538 aaKnown RBP29.36■■■□□ 2.29
PTCD3-206ENST00000465560 KNDC1Q76NI1 1749 aa29.35■■■□□ 2.29
PTCD3-206ENST00000465560 CLSPNQ9HAW4 1339 aa29.35■■■□□ 2.29
PTCD3-206ENST00000465560 PRAG1Q86YV5 1406 aa29.35■■■□□ 2.29
PTCD3-206ENST00000465560 L3MBTL2Q969R5 705 aa29.34■■■□□ 2.29
PTCD3-206ENST00000465560 TMEM94Q12767 1356 aa29.34■■■□□ 2.29
PTCD3-206ENST00000465560 KIAA1210Q9ULL0 1709 aa29.34■■■□□ 2.29
PTCD3-206ENST00000465560 PROSER2Q86WR7 435 aaPredicted RBP29.33■■■□□ 2.29
PTCD3-206ENST00000465560 CFAP70Q5T0N1 1121 aa29.32■■■□□ 2.28
PTCD3-206ENST00000465560 PTCH1Q13635 1447 aa29.31■■■□□ 2.28
PTCD3-206ENST00000465560 ADGRB1O14514 1584 aa29.3■■■□□ 2.28
PTCD3-206ENST00000465560 NCOA3Q9Y6Q9 1424 aa29.28■■■□□ 2.28
PTCD3-206ENST00000465560 TONSLQ96HA7 1378 aa29.28■■■□□ 2.28
PTCD3-206ENST00000465560 TECPR2O15040 1411 aa29.28■■■□□ 2.28
PTCD3-206ENST00000465560 LRPPRCP42704 1394 aaKnown RBP29.27■■■□□ 2.28
PTCD3-206ENST00000465560 YTHDC2Q9H6S0 1430 aaKnown RBP29.27■■■□□ 2.28
PTCD3-206ENST00000465560 TMEM132EQ6IEE7 984 aa29.26■■■□□ 2.27
PTCD3-206ENST00000465560 RBM33Q96EV2 1170 aaKnown RBP29.25■■■□□ 2.27
PTCD3-206ENST00000465560 CCER1Q8TC90 406 aaPredicted RBP29.24■■■□□ 2.27
PTCD3-206ENST00000465560 ROBO2Q9HCK4 1378 aa29.24■■■□□ 2.27
PTCD3-206ENST00000465560 FBXO41Q8TF61 875 aa29.23■■■□□ 2.27
PTCD3-206ENST00000465560 ABCC11Q96J66 1382 aa29.23■■■□□ 2.27
PTCD3-206ENST00000465560 TRPM1Q7Z4N2 1603 aa29.22■■■□□ 2.27
PTCD3-206ENST00000465560 NALCNQ8IZF0 1738 aa29.22■■■□□ 2.27
PTCD3-206ENST00000465560 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.21■■■□□ 2.27
PTCD3-206ENST00000465560 MSH6P52701 1360 aa29.2■■■□□ 2.26
PTCD3-206ENST00000465560 STK26Q9P289 416 aa29.19■■■□□ 2.26
PTCD3-206ENST00000465560 UBAP1LF5GYI3 381 aa29.18■■■□□ 2.26
PTCD3-206ENST00000465560 DLC1Q96QB1 1528 aa29.18■■■□□ 2.26
PTCD3-206ENST00000465560 TOM1O60784 492 aa29.16■■■□□ 2.26
PTCD3-206ENST00000465560 FAM135BQ49AJ0 1406 aa29.15■■■□□ 2.26
PTCD3-206ENST00000465560 ADGRL3Q9HAR2 1447 aa29.15■■■□□ 2.26
PTCD3-206ENST00000465560 C14orf37Q86TY3 774 aa29.15■■■□□ 2.26
PTCD3-206ENST00000465560 ARHGEF28Q8N1W1 1705 aaKnown RBP29.14■■■□□ 2.26
PTCD3-206ENST00000465560 DCCP43146 1447 aa29.12■■■□□ 2.25
PTCD3-206ENST00000465560 SIRT1Q96EB6 747 aa29.12■■■□□ 2.25
PTCD3-206ENST00000465560 C19orf44Q9H6X5 657 aa29.12■■■□□ 2.25
PTCD3-206ENST00000465560 NBPF1Q3BBV0 1214 aa29.1■■■□□ 2.25
PTCD3-206ENST00000465560 NBPF8Q3BBV2 869 aa29.09■■■□□ 2.25
PTCD3-206ENST00000465560 TIMELESSQ9UNS1 1208 aa29.09■■■□□ 2.25
PTCD3-206ENST00000465560 PLEKHH1Q9ULM0 1364 aa29.09■■■□□ 2.25
PTCD3-206ENST00000465560 WAPLQ7Z5K2 1190 aa29.08■■■□□ 2.25
PTCD3-206ENST00000465560 TRAK1Q9UPV9 953 aa29.07■■■□□ 2.24
PTCD3-206ENST00000465560 CDC42BPGQ6DT37 1551 aa29.06■■■□□ 2.24
PTCD3-206ENST00000465560 CADPS2Q86UW7 1296 aa29.06■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms