RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 CHGAP10645 457 aaKnown RBP30.04■■■□□ 2.4
SKA3-205ENST00000465471 ANKRD30BQ9BXX2 1392 aa30.01■■■□□ 2.39
SKA3-205ENST00000465471 NEXMIFQ5QGS0 1516 aa30■■■□□ 2.39
SKA3-205ENST00000465471 SPATA31E1Q6ZUB1 1445 aa29.98■■■□□ 2.39
SKA3-205ENST00000465471 LTBP4Q8N2S1 1624 aa29.98■■■□□ 2.39
SKA3-205ENST00000465471 PLEKHG1Q9ULL1 1385 aa29.97■■■□□ 2.39
SKA3-205ENST00000465471 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.96■■■□□ 2.39
SKA3-205ENST00000465471 HDGFP51858 240 aaKnown RBP29.95■■■□□ 2.39
SKA3-205ENST00000465471 PPLO60437 1756 aa29.92■■■□□ 2.38
SKA3-205ENST00000465471 ZNF335Q9H4Z2 1342 aaPredicted RBP29.91■■■□□ 2.38
SKA3-205ENST00000465471 ZNF326Q5BKZ1 582 aaKnown RBP29.9■■■□□ 2.38
SKA3-205ENST00000465471 IFT172Q9UG01 1749 aa29.9■■■□□ 2.38
SKA3-205ENST00000465471 NRXN3Q9Y4C0 1643 aa29.89■■■□□ 2.37
SKA3-205ENST00000465471 PPP1R15AO75807 674 aaPredicted RBP29.88■■■□□ 2.37
SKA3-205ENST00000465471 SETBP1Q9Y6X0 1596 aa29.88■■■□□ 2.37
SKA3-205ENST00000465471 RPGRIP1LQ68CZ1 1315 aa29.88■■■□□ 2.37
SKA3-205ENST00000465471 STRCP1A6NGW2 1772 aa29.87■■■□□ 2.37
SKA3-205ENST00000465471 DIP2AQ14689 1571 aa29.86■■■□□ 2.37
SKA3-205ENST00000465471 NUTM2DQ5VT03 806 aaPredicted RBP29.86■■■□□ 2.37
SKA3-205ENST00000465471 ADAMTS13Q76LX8 1427 aa29.86■■■□□ 2.37
SKA3-205ENST00000465471 DHX57Q6P158 1386 aaKnown RBP29.83■■■□□ 2.37
SKA3-205ENST00000465471 CPS1P31327 1500 aa29.82■■■□□ 2.36
SKA3-205ENST00000465471 SLC26A8Q96RN1 970 aa29.81■■■□□ 2.36
SKA3-205ENST00000465471 NWD1Q149M9 1564 aa29.8■■■□□ 2.36
SKA3-205ENST00000465471 TBX22Q9Y458 520 aa29.78■■■□□ 2.36
SKA3-205ENST00000465471 IQSEC2Q5JU85 1478 aa29.77■■■□□ 2.36
SKA3-205ENST00000465471 VGFO15240 615 aaPredicted RBP29.77■■■□□ 2.36
SKA3-205ENST00000465471 CERKQ8TCT0 537 aa29.77■■■□□ 2.36
SKA3-205ENST00000465471 CHD2O14647 1828 aaKnown RBP29.76■■■□□ 2.35
SKA3-205ENST00000465471 RGL3Q3MIN7 710 aa29.76■■■□□ 2.35
SKA3-205ENST00000465471 SETD1AO15047 1707 aaKnown RBP29.76■■■□□ 2.35
SKA3-205ENST00000465471 BCANQ96GW7 911 aa29.74■■■□□ 2.35
SKA3-205ENST00000465471 MYOM2P54296 1465 aa29.74■■■□□ 2.35
SKA3-205ENST00000465471 PCGF6Q9BYE7 350 aa29.73■■■□□ 2.35
SKA3-205ENST00000465471 PIK3R4Q99570 1358 aa29.73■■■□□ 2.35
SKA3-205ENST00000465471 SENP3Q9H4L4 574 aaPredicted RBP29.72■■■□□ 2.35
SKA3-205ENST00000465471 NRXN1Q9ULB1 1477 aa29.72■■■□□ 2.35
SKA3-205ENST00000465471 KCNA6P17658 529 aa29.7■■■□□ 2.35
SKA3-205ENST00000465471 LRRC7Q96NW7 1537 aa29.7■■■□□ 2.34
SKA3-205ENST00000465471 NKTRP30414 1462 aaKnown RBP29.69■■■□□ 2.34
SKA3-205ENST00000465471 ALKQ9UM73 1620 aa29.69■■■□□ 2.34
SKA3-205ENST00000465471 ADGRF5Q8IZF2 1346 aa29.69■■■□□ 2.34
SKA3-205ENST00000465471 PIK3C2GO75747 1445 aa29.68■■■□□ 2.34
SKA3-205ENST00000465471 XRN1Q8IZH2 1706 aaKnown RBP29.66■■■□□ 2.34
SKA3-205ENST00000465471 PTPRUQ92729 1446 aa29.65■■■□□ 2.34
SKA3-205ENST00000465471 XIRP1Q702N8 1843 aaKnown RBP29.65■■■□□ 2.34
SKA3-205ENST00000465471 METP08581 1390 aa29.64■■■□□ 2.34
SKA3-205ENST00000465471 LAMC1P11047 1609 aa29.59■■■□□ 2.33
SKA3-205ENST00000465471 PRAG1Q86YV5 1406 aa29.58■■■□□ 2.33
SKA3-205ENST00000465471 STAC3Q96MF2 364 aa29.58■■■□□ 2.33
SKA3-205ENST00000465471 ASXL1Q8IXJ9 1541 aa29.57■■■□□ 2.32
SKA3-205ENST00000465471 SIN3AQ96ST3 1273 aa29.56■■■□□ 2.32
SKA3-205ENST00000465471 TMEM94Q12767 1356 aa29.54■■■□□ 2.32
SKA3-205ENST00000465471 DCAF11Q8TEB1 546 aa29.54■■■□□ 2.32
SKA3-205ENST00000465471 AMOTL2Q9Y2J4 779 aa29.54■■■□□ 2.32
SKA3-205ENST00000465471 FBXO41Q8TF61 875 aa29.52■■■□□ 2.32
SKA3-205ENST00000465471 C14orf93Q9H972 538 aaKnown RBP29.51■■■□□ 2.31
SKA3-205ENST00000465471 PROSER2Q86WR7 435 aaPredicted RBP29.5■■■□□ 2.31
SKA3-205ENST00000465471 PTCH1Q13635 1447 aa29.5■■■□□ 2.31
SKA3-205ENST00000465471 NCOA3Q9Y6Q9 1424 aa29.5■■■□□ 2.31
SKA3-205ENST00000465471 KNDC1Q76NI1 1749 aa29.48■■■□□ 2.31
SKA3-205ENST00000465471 KDM2AQ9Y2K7 1162 aa29.47■■■□□ 2.31
SKA3-205ENST00000465471 TECPR2O15040 1411 aa29.46■■■□□ 2.31
SKA3-205ENST00000465471 ADGRB1O14514 1584 aa29.46■■■□□ 2.31
SKA3-205ENST00000465471 LRPPRCP42704 1394 aaKnown RBP29.44■■■□□ 2.3
SKA3-205ENST00000465471 NEUROD1Q13562 356 aa29.44■■■□□ 2.3
SKA3-205ENST00000465471 CFAP70Q5T0N1 1121 aa29.44■■■□□ 2.3
SKA3-205ENST00000465471 L3MBTL2Q969R5 705 aa29.44■■■□□ 2.3
SKA3-205ENST00000465471 KIAA1210Q9ULL0 1709 aa29.44■■■□□ 2.3
SKA3-205ENST00000465471 RBM33Q96EV2 1170 aaKnown RBP29.42■■■□□ 2.3
SKA3-205ENST00000465471 ROBO2Q9HCK4 1378 aa29.41■■■□□ 2.3
SKA3-205ENST00000465471 YTHDC2Q9H6S0 1430 aaKnown RBP29.41■■■□□ 2.3
SKA3-205ENST00000465471 ABCC11Q96J66 1382 aa29.4■■■□□ 2.3
SKA3-205ENST00000465471 TMEM132EQ6IEE7 984 aa29.39■■■□□ 2.3
SKA3-205ENST00000465471 CLSPNQ9HAW4 1339 aa29.39■■■□□ 2.3
SKA3-205ENST00000465471 UBAP1LF5GYI3 381 aa29.38■■■□□ 2.29
SKA3-205ENST00000465471 ILDR1Q86SU0 546 aaPredicted RBP29.38■■■□□ 2.29
SKA3-205ENST00000465471 NALCNQ8IZF0 1738 aa29.37■■■□□ 2.29
SKA3-205ENST00000465471 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.37■■■□□ 2.29
SKA3-205ENST00000465471 MSH6P52701 1360 aa29.36■■■□□ 2.29
SKA3-205ENST00000465471 TOM1O60784 492 aa29.35■■■□□ 2.29
SKA3-205ENST00000465471 ADGRL3Q9HAR2 1447 aa29.35■■■□□ 2.29
SKA3-205ENST00000465471 DLC1Q96QB1 1528 aa29.34■■■□□ 2.29
SKA3-205ENST00000465471 DCCP43146 1447 aa29.33■■■□□ 2.29
SKA3-205ENST00000465471 FAM135BQ49AJ0 1406 aa29.32■■■□□ 2.28
SKA3-205ENST00000465471 TONSLQ96HA7 1378 aa29.31■■■□□ 2.28
SKA3-205ENST00000465471 SIRT1Q96EB6 747 aa29.3■■■□□ 2.28
SKA3-205ENST00000465471 C19orf44Q9H6X5 657 aa29.3■■■□□ 2.28
SKA3-205ENST00000465471 STK26Q9P289 416 aa29.3■■■□□ 2.28
SKA3-205ENST00000465471 TRPM1Q7Z4N2 1603 aa29.3■■■□□ 2.28
SKA3-205ENST00000465471 C14orf37Q86TY3 774 aa29.26■■■□□ 2.27
SKA3-205ENST00000465471 PLEKHH1Q9ULM0 1364 aa29.26■■■□□ 2.27
SKA3-205ENST00000465471 ARHGEF28Q8N1W1 1705 aaKnown RBP29.25■■■□□ 2.27
SKA3-205ENST00000465471 CDC42BPGQ6DT37 1551 aa29.23■■■□□ 2.27
SKA3-205ENST00000465471 WAPLQ7Z5K2 1190 aa29.22■■■□□ 2.27
SKA3-205ENST00000465471 CADPS2Q86UW7 1296 aa29.22■■■□□ 2.27
SKA3-205ENST00000465471 NBPF1Q3BBV0 1214 aa29.21■■■□□ 2.27
SKA3-205ENST00000465471 PIP4K2BP78356 416 aa29.2■■■□□ 2.26
SKA3-205ENST00000465471 NBPF8Q3BBV2 869 aa29.2■■■□□ 2.26
SKA3-205ENST00000465471 MST1RQ04912 1400 aa29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms