RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 MED1Q15648 1581 aaPredicted RBP26.78■■□□□ 1.88
COL7A1-205ENST00000465238 E9PCH4 1651 aa26.78■■□□□ 1.88
COL7A1-205ENST00000465238 TMEM131LA2VDJ0 1609 aa26.77■■□□□ 1.88
COL7A1-205ENST00000465238 ZFYVE9O95405 1425 aa26.76■■□□□ 1.87
COL7A1-205ENST00000465238 HDGFP51858 240 aaKnown RBP26.76■■□□□ 1.87
COL7A1-205ENST00000465238 TMEM94Q12767 1356 aa26.74■■□□□ 1.87
COL7A1-205ENST00000465238 BCANQ96GW7 911 aa26.74■■□□□ 1.87
COL7A1-205ENST00000465238 RIMS2Q9UQ26 1411 aa26.73■■□□□ 1.87
COL7A1-205ENST00000465238 NUP155O75694 1391 aa26.72■■□□□ 1.87
COL7A1-205ENST00000465238 PLEKHG1Q9ULL1 1385 aa26.72■■□□□ 1.87
COL7A1-205ENST00000465238 NWD1Q149M9 1564 aa26.72■■□□□ 1.87
COL7A1-205ENST00000465238 NKTRP30414 1462 aaKnown RBP26.72■■□□□ 1.87
COL7A1-205ENST00000465238 PPP1R15AO75807 674 aaPredicted RBP26.71■■□□□ 1.87
COL7A1-205ENST00000465238 PROSER2Q86WR7 435 aaPredicted RBP26.71■■□□□ 1.87
COL7A1-205ENST00000465238 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.69■■□□□ 1.86
COL7A1-205ENST00000465238 CHGAP10645 457 aaKnown RBP26.68■■□□□ 1.86
COL7A1-205ENST00000465238 SENP3Q9H4L4 574 aaPredicted RBP26.68■■□□□ 1.86
COL7A1-205ENST00000465238 FAM135BQ49AJ0 1406 aa26.66■■□□□ 1.86
COL7A1-205ENST00000465238 CHD2O14647 1828 aaKnown RBP26.65■■□□□ 1.86
COL7A1-205ENST00000465238 TBX22Q9Y458 520 aa26.63■■□□□ 1.85
COL7A1-205ENST00000465238 RBM33Q96EV2 1170 aaKnown RBP26.62■■□□□ 1.85
COL7A1-205ENST00000465238 MSH6P52701 1360 aa26.6■■□□□ 1.85
COL7A1-205ENST00000465238 PHF23Q9BUL5 403 aaPredicted RBP26.6■■□□□ 1.85
COL7A1-205ENST00000465238 DIP2AQ14689 1571 aa26.58■■□□□ 1.85
COL7A1-205ENST00000465238 SPHKAPQ2M3C7 1700 aa26.58■■□□□ 1.85
COL7A1-205ENST00000465238 ADAMTS13Q76LX8 1427 aa26.57■■□□□ 1.84
COL7A1-205ENST00000465238 ROBO1Q9Y6N7 1651 aa26.57■■□□□ 1.84
COL7A1-205ENST00000465238 NUTM2DQ5VT03 806 aaPredicted RBP26.56■■□□□ 1.84
COL7A1-205ENST00000465238 PIK3R4Q99570 1358 aa26.55■■□□□ 1.84
COL7A1-205ENST00000465238 NCOA3Q9Y6Q9 1424 aa26.54■■□□□ 1.84
COL7A1-205ENST00000465238 NAIPQ13075 1403 aa26.51■■□□□ 1.83
COL7A1-205ENST00000465238 SLAIN2Q9P270 581 aa26.51■■□□□ 1.83
COL7A1-205ENST00000465238 TRPM2O94759 1503 aa26.5■■□□□ 1.83
COL7A1-205ENST00000465238 HFM1A2PYH4 1435 aa26.48■■□□□ 1.83
COL7A1-205ENST00000465238 C14orf37Q86TY3 774 aa26.46■■□□□ 1.83
COL7A1-205ENST00000465238 ZNF326Q5BKZ1 582 aaKnown RBP26.45■■□□□ 1.82
COL7A1-205ENST00000465238 SETBP1Q9Y6X0 1596 aa26.44■■□□□ 1.82
COL7A1-205ENST00000465238 AMOTL2Q9Y2J4 779 aa26.43■■□□□ 1.82
COL7A1-205ENST00000465238 CLTCL1P53675 1640 aa26.43■■□□□ 1.82
COL7A1-205ENST00000465238 NRXN3Q9Y4C0 1643 aa26.43■■□□□ 1.82
COL7A1-205ENST00000465238 C19orf44Q9H6X5 657 aa26.42■■□□□ 1.82
COL7A1-205ENST00000465238 PHLPP1O60346 1717 aa26.42■■□□□ 1.82
COL7A1-205ENST00000465238 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.42■■□□□ 1.82
COL7A1-205ENST00000465238 PTPRUQ92729 1446 aa26.41■■□□□ 1.82
COL7A1-205ENST00000465238 CADPS2Q86UW7 1296 aa26.41■■□□□ 1.82
COL7A1-205ENST00000465238 KIF1BO60333 1816 aa26.39■■□□□ 1.82
COL7A1-205ENST00000465238 ATF3P18847 181 aa26.39■■□□□ 1.82
COL7A1-205ENST00000465238 RGS17Q9UGC6 210 aaPredicted RBP26.38■■□□□ 1.81
COL7A1-205ENST00000465238 XRN1Q8IZH2 1706 aaKnown RBP26.37■■□□□ 1.81
COL7A1-205ENST00000465238 TRIM52Q96A61 297 aa26.37■■□□□ 1.81
COL7A1-205ENST00000465238 NEXMIFQ5QGS0 1516 aa26.37■■□□□ 1.81
COL7A1-205ENST00000465238 JCADQ9P266 1359 aa26.35■■□□□ 1.81
COL7A1-205ENST00000465238 SETD5Q9C0A6 1442 aa26.34■■□□□ 1.81
COL7A1-205ENST00000465238 DCCP43146 1447 aa26.33■■□□□ 1.81
COL7A1-205ENST00000465238 COL16A1Q07092 1604 aaPredicted RBP26.33■■□□□ 1.81
COL7A1-205ENST00000465238 METP08581 1390 aa26.33■■□□□ 1.8
COL7A1-205ENST00000465238 SLC4A1APQ9BWU0 796 aaKnown RBP26.31■■□□□ 1.8
COL7A1-205ENST00000465238 AHDC1Q5TGY3 1603 aaPredicted RBP26.29■■□□□ 1.8
COL7A1-205ENST00000465238 ACIN1Q9UKV3 1341 aaKnown RBP26.28■■□□□ 1.8
COL7A1-205ENST00000465238 VGFO15240 615 aaPredicted RBP26.26■■□□□ 1.79
COL7A1-205ENST00000465238 TRIM26Q12899 539 aaPredicted RBP26.26■■□□□ 1.79
COL7A1-205ENST00000465238 RPGRIP1LQ68CZ1 1315 aa26.24■■□□□ 1.79
COL7A1-205ENST00000465238 BRINP3Q76B58 766 aa26.24■■□□□ 1.79
COL7A1-205ENST00000465238 RAB3GAP2Q9H2M9 1393 aa26.23■■□□□ 1.79
COL7A1-205ENST00000465238 SPATA31A6Q5VVP1 1343 aa26.23■■□□□ 1.79
COL7A1-205ENST00000465238 POTEAQ6S8J7 498 aa26.23■■□□□ 1.79
COL7A1-205ENST00000465238 ADGRL3Q9HAR2 1447 aa26.22■■□□□ 1.79
COL7A1-205ENST00000465238 SHPRHQ149N8 1683 aa26.21■■□□□ 1.79
COL7A1-205ENST00000465238 MST1RQ04912 1400 aa26.21■■□□□ 1.79
COL7A1-205ENST00000465238 SETD1AO15047 1707 aaKnown RBP26.19■■□□□ 1.78
COL7A1-205ENST00000465238 ASXL1Q8IXJ9 1541 aa26.19■■□□□ 1.78
COL7A1-205ENST00000465238 PPLO60437 1756 aa26.19■■□□□ 1.78
COL7A1-205ENST00000465238 NALCNQ8IZF0 1738 aa26.18■■□□□ 1.78
COL7A1-205ENST00000465238 PTCH1Q13635 1447 aa26.17■■□□□ 1.78
COL7A1-205ENST00000465238 HRCP23327 699 aa26.16■■□□□ 1.78
COL7A1-205ENST00000465238 LRP6O75581 1613 aa26.15■■□□□ 1.78
COL7A1-205ENST00000465238 PRAG1Q86YV5 1406 aa26.14■■□□□ 1.78
COL7A1-205ENST00000465238 NHSL1Q5SYE7 1610 aa26.14■■□□□ 1.78
COL7A1-205ENST00000465238 FOXD1Q16676 465 aa26.14■■□□□ 1.78
COL7A1-205ENST00000465238 CCDC144AA2RUR9 1427 aa26.14■■□□□ 1.77
COL7A1-205ENST00000465238 MPHOSPH9Q99550 1183 aa26.13■■□□□ 1.77
COL7A1-205ENST00000465238 MEX3CQ5U5Q3 659 aaKnown RBP26.12■■□□□ 1.77
COL7A1-205ENST00000465238 ROBO2Q9HCK4 1378 aa26.11■■□□□ 1.77
COL7A1-205ENST00000465238 LRRC59Q96AG4 307 aaKnown RBP26.08■■□□□ 1.77
COL7A1-205ENST00000465238 C1orf167Q5SNV9 1468 aa26.07■■□□□ 1.76
COL7A1-205ENST00000465238 ZNF772Q68DY9 489 aaPredicted RBP26.07■■□□□ 1.76
COL7A1-205ENST00000465238 SPATA31E1Q6ZUB1 1445 aa26.06■■□□□ 1.76
COL7A1-205ENST00000465238 ANKRD30BQ9BXX2 1392 aa26.05■■□□□ 1.76
COL7A1-205ENST00000465238 RGL3Q3MIN7 710 aa26.04■■□□□ 1.76
COL7A1-205ENST00000465238 IFT172Q9UG01 1749 aa26.03■■□□□ 1.76
COL7A1-205ENST00000465238 NUTM2BA6NNL0 878 aaPredicted RBP26.03■■□□□ 1.76
COL7A1-205ENST00000465238 NUTM2EB1AL46 878 aaPredicted RBP26.03■■□□□ 1.76
COL7A1-205ENST00000465238 NUTM2AQ8IVF1 878 aaPredicted RBP26.03■■□□□ 1.76
COL7A1-205ENST00000465238 ADGRF5Q8IZF2 1346 aa26.03■■□□□ 1.76
COL7A1-205ENST00000465238 DDX17Q92841 729 aaKnown RBP26.02■■□□□ 1.76
COL7A1-205ENST00000465238 LAMC1P11047 1609 aa26.02■■□□□ 1.76
COL7A1-205ENST00000465238 PNPLA6Q8IY17 1366 aa25.99■■□□□ 1.75
COL7A1-205ENST00000465238 ORAI2Q96SN7 254 aa25.97■■□□□ 1.75
COL7A1-205ENST00000465238 TECPR2O15040 1411 aa25.97■■□□□ 1.75
COL7A1-205ENST00000465238 CDC42BPGQ6DT37 1551 aa25.96■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms