RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.22□□□□□ -0.29
UBE4B-204ENST00000462658 DNAJB2P25686 324 aa13.22□□□□□ -0.29
UBE4B-204ENST00000462658 MRPL50Q8N5N7 158 aaKnown RBP13.22□□□□□ -0.29
UBE4B-204ENST00000462658 FAM98CQ17RN3 349 aaKnown RBP13.21□□□□□ -0.29
UBE4B-204ENST00000462658 GIGYF2Q6Y7W6 1299 aaKnown RBP13.19□□□□□ -0.3
UBE4B-204ENST00000462658 STAC3Q96MF2 364 aa13.19□□□□□ -0.3
UBE4B-204ENST00000462658 TMUB1Q9BVT8 246 aa13.19□□□□□ -0.3
UBE4B-204ENST00000462658 KDM4CQ9H3R0 1056 aa13.19□□□□□ -0.3
UBE4B-204ENST00000462658 CLCN1P35523 988 aa13.18□□□□□ -0.3
UBE4B-204ENST00000462658 LAPTM4BQ86VI4 370 aa13.18□□□□□ -0.3
UBE4B-204ENST00000462658 TMEM134Q9H6X4 195 aa13.18□□□□□ -0.3
UBE4B-204ENST00000462658 GPCPD1Q9NPB8 672 aa13.18□□□□□ -0.3
UBE4B-204ENST00000462658 SWT1Q5T5J6 900 aaKnown RBP13.17□□□□□ -0.3
UBE4B-204ENST00000462658 ZFRQ96KR1 1074 aaKnown RBP13.17□□□□□ -0.3
UBE4B-204ENST00000462658 SAMD7Q7Z3H4 446 aa13.15□□□□□ -0.3
UBE4B-204ENST00000462658 DAXXQ9UER7 740 aaPredicted RBP13.15□□□□□ -0.3
UBE4B-204ENST00000462658 GOLGA8CPA6NN73 597 aa13.13□□□□□ -0.31
UBE4B-204ENST00000462658 MS4A1P11836 297 aa13.13□□□□□ -0.31
UBE4B-204ENST00000462658 FAM217BQ9NTX9 383 aaPredicted RBP13.13□□□□□ -0.31
UBE4B-204ENST00000462658 SSTR3P32745 418 aaPredicted RBP13.12□□□□□ -0.31
UBE4B-204ENST00000462658 DDX11L8A8MPP1 907 aa13.1□□□□□ -0.31
UBE4B-204ENST00000462658 HDGFP51858 240 aaKnown RBP13.1□□□□□ -0.31
UBE4B-204ENST00000462658 RNF40O75150 1001 aa13.09□□□□□ -0.31
UBE4B-204ENST00000462658 WNT2BQ93097 391 aa13.08□□□□□ -0.32
UBE4B-204ENST00000462658 FAM117AQ9C073 453 aa13.08□□□□□ -0.32
UBE4B-204ENST00000462658 BCAMP50895 628 aa13.07□□□□□ -0.32
UBE4B-204ENST00000462658 ANKK1Q8NFD2 765 aa13.07□□□□□ -0.32
UBE4B-204ENST00000462658 LRCH3Q96II8 777 aa13.07□□□□□ -0.32
UBE4B-204ENST00000462658 PCDH10Q9P2E7 1040 aa13.07□□□□□ -0.32
UBE4B-204ENST00000462658 IL27Q8NEV9 243 aa13.06□□□□□ -0.32
UBE4B-204ENST00000462658 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.06□□□□□ -0.32
UBE4B-204ENST00000462658 SLC10A3P09131 477 aa13.05□□□□□ -0.32
UBE4B-204ENST00000462658 RDH13Q8NBN7 331 aa13.05□□□□□ -0.32
UBE4B-204ENST00000462658 KCTD12Q96CX2 325 aaKnown RBP13.05□□□□□ -0.32
UBE4B-204ENST00000462658 SULF1Q8IWU6 871 aa13.04□□□□□ -0.32
UBE4B-204ENST00000462658 SOWAHBA6NEL2 793 aa13.03□□□□□ -0.32
UBE4B-204ENST00000462658 CD46P15529 392 aa13.03□□□□□ -0.32
UBE4B-204ENST00000462658 SLF2Q8IX21 1173 aa13.03□□□□□ -0.32
UBE4B-204ENST00000462658 BEGAINQ9BUH8 593 aa13.03□□□□□ -0.32
UBE4B-204ENST00000462658 EIF4G1Q04637 1599 aaKnown RBP13.02□□□□□ -0.33
UBE4B-204ENST00000462658 PLEKHG3A1L390 1219 aa13.01□□□□□ -0.33
UBE4B-204ENST00000462658 SPNS2Q8IVW8 549 aa13.01□□□□□ -0.33
UBE4B-204ENST00000462658 SLC4A3P48751 1232 aa13□□□□□ -0.33
UBE4B-204ENST00000462658 MYT1LQ9UL68 1186 aa13□□□□□ -0.33
UBE4B-204ENST00000462658 HPS5Q9UPZ3 1129 aa13□□□□□ -0.33
UBE4B-204ENST00000462658 CC2D2AQ9P2K1 1620 aa12.99□□□□□ -0.33
UBE4B-204ENST00000462658 THSD4Q6ZMP0 1018 aa12.98□□□□□ -0.33
UBE4B-204ENST00000462658 DDRGK1Q96HY6 314 aa12.98□□□□□ -0.33
UBE4B-204ENST00000462658 CFHP08603 1231 aa12.96□□□□□ -0.33
UBE4B-204ENST00000462658 PPP4CP60510 307 aa12.96□□□□□ -0.33
UBE4B-204ENST00000462658 RSPH4AQ5TD94 716 aa12.96□□□□□ -0.33
UBE4B-204ENST00000462658 WBP1LQ9NX94 342 aa12.95□□□□□ -0.34
UBE4B-204ENST00000462658 TSR3Q9UJK0 312 aaKnown RBP12.95□□□□□ -0.34
UBE4B-204ENST00000462658 GCGRP47871 477 aa12.94□□□□□ -0.34
UBE4B-204ENST00000462658 PTPN5P54829 565 aa12.93□□□□□ -0.34
UBE4B-204ENST00000462658 SPIRE2Q8WWL2 714 aa12.92□□□□□ -0.34
UBE4B-204ENST00000462658 NUTM1Q86Y26 1132 aa12.91□□□□□ -0.34
UBE4B-204ENST00000462658 TBC1D2Q9BYX2 928 aa12.91□□□□□ -0.34
UBE4B-204ENST00000462658 APLP1P51693 650 aa12.9□□□□□ -0.34
UBE4B-204ENST00000462658 TMEM132AQ24JP5 1023 aa12.9□□□□□ -0.34
UBE4B-204ENST00000462658 KDM4AO75164 1064 aa12.89□□□□□ -0.35
UBE4B-204ENST00000462658 RNF166Q96A37 237 aaPredicted RBP12.89□□□□□ -0.35
UBE4B-204ENST00000462658 KMT5BQ4FZB7 885 aa12.88□□□□□ -0.35
UBE4B-204ENST00000462658 FUT2Q10981 343 aa12.87□□□□□ -0.35
UBE4B-204ENST00000462658 MYSM1Q5VVJ2 828 aa12.87□□□□□ -0.35
UBE4B-204ENST00000462658 NECTIN2Q92692 538 aa12.87□□□□□ -0.35
UBE4B-204ENST00000462658 CECR2Q9BXF3 1484 aa12.86□□□□□ -0.35
UBE4B-204ENST00000462658 HLA-CQ95604 372 aa12.86□□□□□ -0.35
UBE4B-204ENST00000462658 POLR3EQ9NVU0 708 aa12.86□□□□□ -0.35
UBE4B-204ENST00000462658 MOXD2PA6NHM9 499 aa12.85□□□□□ -0.35
UBE4B-204ENST00000462658 SUPT5HO00267 1087 aaKnown RBP12.85□□□□□ -0.35
UBE4B-204ENST00000462658 NDUFV2P19404 249 aa12.85□□□□□ -0.35
UBE4B-204ENST00000462658 ACTN4O43707 911 aaKnown RBP12.84□□□□□ -0.35
UBE4B-204ENST00000462658 MMRN1Q13201 1228 aa12.84□□□□□ -0.35
UBE4B-204ENST00000462658 PUS10Q3MIT2 529 aaKnown RBP12.84□□□□□ -0.35
UBE4B-204ENST00000462658 RSPH6AQ9H0K4 717 aa12.84□□□□□ -0.35
UBE4B-204ENST00000462658 HOXA2O43364 376 aa12.83□□□□□ -0.36
UBE4B-204ENST00000462658 GUCA2AQ02747 115 aa12.83□□□□□ -0.36
UBE4B-204ENST00000462658 SH3D19Q5HYK7 790 aa12.83□□□□□ -0.36
UBE4B-204ENST00000462658 DIXDC1Q155Q3 683 aa12.82□□□□□ -0.36
UBE4B-204ENST00000462658 USP46P62068 366 aa12.81□□□□□ -0.36
UBE4B-204ENST00000462658 SKIV2LQ15477 1246 aaKnown RBP12.81□□□□□ -0.36
UBE4B-204ENST00000462658 LIMD1Q9UGP4 676 aa12.81□□□□□ -0.36
UBE4B-204ENST00000462658 ATP6V1AP38606 617 aa12.8□□□□□ -0.36
UBE4B-204ENST00000462658 RIC3Q7Z5B4 369 aa12.8□□□□□ -0.36
UBE4B-204ENST00000462658 PROCA1Q8NCQ7 364 aaPredicted RBP12.8□□□□□ -0.36
UBE4B-204ENST00000462658 PRR14Q9BWN1 585 aa12.8□□□□□ -0.36
UBE4B-204ENST00000462658 RSBN1LQ6PCB5 846 aaPredicted RBP12.79□□□□□ -0.36
UBE4B-204ENST00000462658 ATP1B4Q9UN42 357 aaPredicted RBP12.79□□□□□ -0.36
UBE4B-204ENST00000462658 PCDHB3Q9Y5E6 796 aa12.79□□□□□ -0.36
UBE4B-204ENST00000462658 CLK2P49760 499 aaKnown RBP12.78□□□□□ -0.36
UBE4B-204ENST00000462658 MORN1Q5T089 497 aa12.78□□□□□ -0.36
UBE4B-204ENST00000462658 SPTLC1O15269 473 aa12.77□□□□□ -0.37
UBE4B-204ENST00000462658 CSPP1Q1MSJ5 1256 aa12.77□□□□□ -0.37
UBE4B-204ENST00000462658 BLOC1S3Q6QNY0 202 aa12.77□□□□□ -0.37
UBE4B-204ENST00000462658 GOPCQ9HD26 462 aa12.77□□□□□ -0.37
UBE4B-204ENST00000462658 PCDHGC3Q9UN70 934 aa12.77□□□□□ -0.37
UBE4B-204ENST00000462658 FDX1P10109 184 aa12.76□□□□□ -0.37
UBE4B-204ENST00000462658 COPS2P61201 443 aa12.76□□□□□ -0.37
UBE4B-204ENST00000462658 GRIPAP1Q4V328 841 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms