RNA–Protein interactions for RNA: ENST00000462553.2

CDC42BPA-210, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 430 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-210ENST00000462553 UNC13BO14795 1591 aa12.42□□□□□ -0.42
CDC42BPA-210ENST00000462553 KANK1Q14678 1352 aa12.42□□□□□ -0.42
CDC42BPA-210ENST00000462553 CHD2O14647 1828 aaKnown RBP12.41□□□□□ -0.42
CDC42BPA-210ENST00000462553 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.41□□□□□ -0.42
CDC42BPA-210ENST00000462553 TMEM131LA2VDJ0 1609 aa12.4□□□□□ -0.42
CDC42BPA-210ENST00000462553 NKTRP30414 1462 aaKnown RBP12.4□□□□□ -0.43
CDC42BPA-210ENST00000462553 RPRD2Q5VT52 1461 aaKnown RBP12.4□□□□□ -0.43
CDC42BPA-210ENST00000462553 E9PCH4 1651 aa12.39□□□□□ -0.43
CDC42BPA-210ENST00000462553 IDI1Q13907 227 aa12.39□□□□□ -0.43
CDC42BPA-210ENST00000462553 CHIC2Q9UKJ5 165 aa12.39□□□□□ -0.43
CDC42BPA-210ENST00000462553 ZFYVE9O95405 1425 aa12.38□□□□□ -0.43
CDC42BPA-210ENST00000462553 TMEM94Q12767 1356 aa12.38□□□□□ -0.43
CDC42BPA-210ENST00000462553 FAM135BQ49AJ0 1406 aa12.37□□□□□ -0.43
CDC42BPA-210ENST00000462553 EID1Q9Y6B2 187 aa12.37□□□□□ -0.43
CDC42BPA-210ENST00000462553 IQGAP3Q86VI3 1631 aa12.37□□□□□ -0.43
CDC42BPA-210ENST00000462553 ANKRD50Q9ULJ7 1429 aa12.37□□□□□ -0.43
CDC42BPA-210ENST00000462553 PHLPP1O60346 1717 aa12.35□□□□□ -0.43
CDC42BPA-210ENST00000462553 APLP2Q06481 763 aa12.35□□□□□ -0.43
CDC42BPA-210ENST00000462553 RGS17Q9UGC6 210 aaPredicted RBP12.35□□□□□ -0.43
CDC42BPA-210ENST00000462553 KCNA6P17658 529 aa12.34□□□□□ -0.43
CDC42BPA-210ENST00000462553 SLC26A8Q96RN1 970 aa12.33□□□□□ -0.44
CDC42BPA-210ENST00000462553 STAG3Q9UJ98 1225 aa12.33□□□□□ -0.44
CDC42BPA-210ENST00000462553 COL16A1Q07092 1604 aaPredicted RBP12.33□□□□□ -0.44
CDC42BPA-210ENST00000462553 PLEKHG1Q9ULL1 1385 aa12.32□□□□□ -0.44
CDC42BPA-210ENST00000462553 DIP2AQ14689 1571 aa12.32□□□□□ -0.44
CDC42BPA-210ENST00000462553 SETD1AO15047 1707 aaKnown RBP12.31□□□□□ -0.44
CDC42BPA-210ENST00000462553 RIMS2Q9UQ26 1411 aa12.31□□□□□ -0.44
CDC42BPA-210ENST00000462553 RBM33Q96EV2 1170 aaKnown RBP12.31□□□□□ -0.44
CDC42BPA-210ENST00000462553 SLC52A1Q9NWF4 448 aa12.31□□□□□ -0.44
CDC42BPA-210ENST00000462553 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.31□□□□□ -0.44
CDC42BPA-210ENST00000462553 NCBP3Q53F19 620 aaKnown RBP12.3□□□□□ -0.44
CDC42BPA-210ENST00000462553 SPHKAPQ2M3C7 1700 aa12.3□□□□□ -0.44
CDC42BPA-210ENST00000462553 NRXN3Q9Y4C0 1643 aa12.29□□□□□ -0.44
CDC42BPA-210ENST00000462553 ADAMTS13Q76LX8 1427 aa12.29□□□□□ -0.44
CDC42BPA-210ENST00000462553 FAM50AQ14320 339 aaKnown RBP12.29□□□□□ -0.44
CDC42BPA-210ENST00000462553 PROSER2Q86WR7 435 aaPredicted RBP12.28□□□□□ -0.44
CDC42BPA-210ENST00000462553 ROCK1Q13464 1354 aa12.28□□□□□ -0.44
CDC42BPA-210ENST00000462553 XRN1Q8IZH2 1706 aaKnown RBP12.28□□□□□ -0.44
CDC42BPA-210ENST00000462553 SHPRHQ149N8 1683 aa12.27□□□□□ -0.45
CDC42BPA-210ENST00000462553 MSH6P52701 1360 aa12.27□□□□□ -0.45
CDC42BPA-210ENST00000462553 AHDC1Q5TGY3 1603 aaPredicted RBP12.26□□□□□ -0.45
CDC42BPA-210ENST00000462553 POTEAQ6S8J7 498 aa12.25□□□□□ -0.45
CDC42BPA-210ENST00000462553 TRPM2O94759 1503 aa12.25□□□□□ -0.45
CDC42BPA-210ENST00000462553 LRP6O75581 1613 aa12.24□□□□□ -0.45
CDC42BPA-210ENST00000462553 NCOA3Q9Y6Q9 1424 aa12.24□□□□□ -0.45
CDC42BPA-210ENST00000462553 SETBP1Q9Y6X0 1596 aa12.24□□□□□ -0.45
CDC42BPA-210ENST00000462553 PTPRUQ92729 1446 aa12.23□□□□□ -0.45
CDC42BPA-210ENST00000462553 NHSL1Q5SYE7 1610 aa12.22□□□□□ -0.45
CDC42BPA-210ENST00000462553 PIK3R4Q99570 1358 aa12.22□□□□□ -0.45
CDC42BPA-210ENST00000462553 JCADQ9P266 1359 aa12.22□□□□□ -0.45
CDC42BPA-210ENST00000462553 SLAIN2Q9P270 581 aa12.22□□□□□ -0.45
CDC42BPA-210ENST00000462553 TBX22Q9Y458 520 aa12.22□□□□□ -0.45
CDC42BPA-210ENST00000462553 CLTCL1P53675 1640 aa12.22□□□□□ -0.45
CDC42BPA-210ENST00000462553 NALCNQ8IZF0 1738 aa12.21□□□□□ -0.45
CDC42BPA-210ENST00000462553 PPP1R15AO75807 674 aaPredicted RBP12.21□□□□□ -0.45
CDC42BPA-210ENST00000462553 BCANQ96GW7 911 aa12.21□□□□□ -0.45
CDC42BPA-210ENST00000462553 NUTM2DQ5VT03 806 aaPredicted RBP12.2□□□□□ -0.46
CDC42BPA-210ENST00000462553 KIF1BO60333 1816 aa12.2□□□□□ -0.46
CDC42BPA-210ENST00000462553 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.19□□□□□ -0.46
CDC42BPA-210ENST00000462553 NEXMIFQ5QGS0 1516 aa12.19□□□□□ -0.46
CDC42BPA-210ENST00000462553 NUP155O75694 1391 aa12.18□□□□□ -0.46
CDC42BPA-210ENST00000462553 ASXL1Q8IXJ9 1541 aa12.18□□□□□ -0.46
CDC42BPA-210ENST00000462553 CHGAP10645 457 aaKnown RBP12.18□□□□□ -0.46
CDC42BPA-210ENST00000462553 DCCP43146 1447 aa12.18□□□□□ -0.46
CDC42BPA-210ENST00000462553 HDGFP51858 240 aaKnown RBP12.17□□□□□ -0.46
CDC42BPA-210ENST00000462553 PPARGC1BQ86YN6 1023 aaKnown RBP12.16□□□□□ -0.46
CDC42BPA-210ENST00000462553 MST1RQ04912 1400 aa12.15□□□□□ -0.46
CDC42BPA-210ENST00000462553 LAMC1P11047 1609 aa12.15□□□□□ -0.47
CDC42BPA-210ENST00000462553 RRBP1Q9P2E9 1410 aaKnown RBP12.14□□□□□ -0.47
CDC42BPA-210ENST00000462553 CADPS2Q86UW7 1296 aa12.14□□□□□ -0.47
CDC42BPA-210ENST00000462553 C19orf44Q9H6X5 657 aa12.14□□□□□ -0.47
CDC42BPA-210ENST00000462553 METP08581 1390 aa12.14□□□□□ -0.47
CDC42BPA-210ENST00000462553 SPATA31A6Q5VVP1 1343 aa12.13□□□□□ -0.47
CDC42BPA-210ENST00000462553 PPLO60437 1756 aa12.13□□□□□ -0.47
CDC42BPA-210ENST00000462553 BRINP3Q76B58 766 aa12.13□□□□□ -0.47
CDC42BPA-210ENST00000462553 C14orf37Q86TY3 774 aa12.13□□□□□ -0.47
CDC42BPA-210ENST00000462553 AMOTL2Q9Y2J4 779 aa12.13□□□□□ -0.47
CDC42BPA-210ENST00000462553 ADGRL3Q9HAR2 1447 aa12.12□□□□□ -0.47
CDC42BPA-210ENST00000462553 ITGAEP38570 1179 aa12.12□□□□□ -0.47
CDC42BPA-210ENST00000462553 SRCAPQ6ZRS2 3230 aa12.12□□□□□ -0.47
CDC42BPA-210ENST00000462553 SETD5Q9C0A6 1442 aa12.11□□□□□ -0.47
CDC42BPA-210ENST00000462553 EP400Q96L91 3159 aa12.11□□□□□ -0.47
CDC42BPA-210ENST00000462553 ATF3P18847 181 aa12.11□□□□□ -0.47
CDC42BPA-210ENST00000462553 NAIPQ13075 1403 aa12.11□□□□□ -0.47
CDC42BPA-210ENST00000462553 PRAG1Q86YV5 1406 aa12.09□□□□□ -0.47
CDC42BPA-210ENST00000462553 PTCH1Q13635 1447 aa12.08□□□□□ -0.48
CDC42BPA-210ENST00000462553 IFT172Q9UG01 1749 aa12.08□□□□□ -0.48
CDC42BPA-210ENST00000462553 CDK12Q9NYV4 1490 aaPredicted RBP12.08□□□□□ -0.48
CDC42BPA-210ENST00000462553 PNPLA6Q8IY17 1366 aa12.06□□□□□ -0.48
CDC42BPA-210ENST00000462553 ZNF326Q5BKZ1 582 aaKnown RBP12.06□□□□□ -0.48
CDC42BPA-210ENST00000462553 COL22A1Q8NFW1 1626 aaPredicted RBP12.05□□□□□ -0.48
CDC42BPA-210ENST00000462553 MEX3CQ5U5Q3 659 aaKnown RBP12.05□□□□□ -0.48
CDC42BPA-210ENST00000462553 ZNF772Q68DY9 489 aaPredicted RBP12.05□□□□□ -0.48
CDC42BPA-210ENST00000462553 C1orf167Q5SNV9 1468 aa12.05□□□□□ -0.48
CDC42BPA-210ENST00000462553 MARF1Q9Y4F3 1742 aaKnown RBP12.05□□□□□ -0.48
CDC42BPA-210ENST00000462553 HFM1A2PYH4 1435 aa12.04□□□□□ -0.48
CDC42BPA-210ENST00000462553 ROBO2Q9HCK4 1378 aa12.04□□□□□ -0.48
CDC42BPA-210ENST00000462553 RGS12O14924 1447 aa12.03□□□□□ -0.48
CDC42BPA-210ENST00000462553 DDX17Q92841 729 aaKnown RBP12.03□□□□□ -0.48
CDC42BPA-210ENST00000462553 UPF1Q92900 1129 aaKnown RBP eCLIP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms