RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 ITGAEP38570 1179 aa23.54■■□□□ 1.36
SKA3-204ENST00000462482 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.54■■□□□ 1.36
SKA3-204ENST00000462482 RIMS2Q9UQ26 1411 aa23.51■■□□□ 1.35
SKA3-204ENST00000462482 PLEKHG1Q9ULL1 1385 aa23.51■■□□□ 1.35
SKA3-204ENST00000462482 FAM135BQ49AJ0 1406 aa23.5■■□□□ 1.35
SKA3-204ENST00000462482 TET3O43151 1660 aa23.5■■□□□ 1.35
SKA3-204ENST00000462482 RBM33Q96EV2 1170 aaKnown RBP23.49■■□□□ 1.35
SKA3-204ENST00000462482 NUP155O75694 1391 aa23.49■■□□□ 1.35
SKA3-204ENST00000462482 MSH6P52701 1360 aa23.49■■□□□ 1.35
SKA3-204ENST00000462482 NKTRP30414 1462 aaKnown RBP23.49■■□□□ 1.35
SKA3-204ENST00000462482 ZFYVE9O95405 1425 aa23.47■■□□□ 1.35
SKA3-204ENST00000462482 TBX22Q9Y458 520 aa23.46■■□□□ 1.35
SKA3-204ENST00000462482 UNC13BO14795 1591 aa23.45■■□□□ 1.34
SKA3-204ENST00000462482 PPARGC1BQ86YN6 1023 aaKnown RBP23.45■■□□□ 1.34
SKA3-204ENST00000462482 C14orf37Q86TY3 774 aa23.44■■□□□ 1.34
SKA3-204ENST00000462482 NWD1Q149M9 1564 aa23.41■■□□□ 1.34
SKA3-204ENST00000462482 NUTM2DQ5VT03 806 aaPredicted RBP23.41■■□□□ 1.34
SKA3-204ENST00000462482 SLAIN2Q9P270 581 aa23.41■■□□□ 1.34
SKA3-204ENST00000462482 GCC2Q8IWJ2 1684 aa23.41■■□□□ 1.34
SKA3-204ENST00000462482 TMEM131LA2VDJ0 1609 aa23.39■■□□□ 1.33
SKA3-204ENST00000462482 XIRP1Q702N8 1843 aaKnown RBP23.37■■□□□ 1.33
SKA3-204ENST00000462482 IQGAP3Q86VI3 1631 aa23.37■■□□□ 1.33
SKA3-204ENST00000462482 NCOA3Q9Y6Q9 1424 aa23.35■■□□□ 1.33
SKA3-204ENST00000462482 PIK3R4Q99570 1358 aa23.35■■□□□ 1.33
SKA3-204ENST00000462482 ZNF326Q5BKZ1 582 aaKnown RBP23.34■■□□□ 1.33
SKA3-204ENST00000462482 E9PCH4 1651 aa23.34■■□□□ 1.33
SKA3-204ENST00000462482 ATF3P18847 181 aa23.33■■□□□ 1.33
SKA3-204ENST00000462482 CADPS2Q86UW7 1296 aa23.33■■□□□ 1.33
SKA3-204ENST00000462482 ADAMTS13Q76LX8 1427 aa23.32■■□□□ 1.32
SKA3-204ENST00000462482 ROBO1Q9Y6N7 1651 aa23.32■■□□□ 1.32
SKA3-204ENST00000462482 C19orf44Q9H6X5 657 aa23.31■■□□□ 1.32
SKA3-204ENST00000462482 DIP2AQ14689 1571 aa23.31■■□□□ 1.32
SKA3-204ENST00000462482 AMOTL2Q9Y2J4 779 aa23.3■■□□□ 1.32
SKA3-204ENST00000462482 JCADQ9P266 1359 aa23.28■■□□□ 1.32
SKA3-204ENST00000462482 RGS17Q9UGC6 210 aaPredicted RBP23.28■■□□□ 1.32
SKA3-204ENST00000462482 TRPM2O94759 1503 aa23.26■■□□□ 1.31
SKA3-204ENST00000462482 MYO5BQ9ULV0 1848 aa23.25■■□□□ 1.31
SKA3-204ENST00000462482 CHD2O14647 1828 aaKnown RBP23.24■■□□□ 1.31
SKA3-204ENST00000462482 TRIM52Q96A61 297 aa23.22■■□□□ 1.31
SKA3-204ENST00000462482 RRBP1Q9P2E9 1410 aaKnown RBP23.22■■□□□ 1.31
SKA3-204ENST00000462482 MEX3CQ5U5Q3 659 aaKnown RBP23.19■■□□□ 1.3
SKA3-204ENST00000462482 POTEAQ6S8J7 498 aa23.19■■□□□ 1.3
SKA3-204ENST00000462482 SPATA31A6Q5VVP1 1343 aa23.18■■□□□ 1.3
SKA3-204ENST00000462482 NAIPQ13075 1403 aa23.17■■□□□ 1.3
SKA3-204ENST00000462482 PTPRUQ92729 1446 aa23.17■■□□□ 1.3
SKA3-204ENST00000462482 PHLPP1O60346 1717 aa23.17■■□□□ 1.3
SKA3-204ENST00000462482 DCCP43146 1447 aa23.16■■□□□ 1.3
SKA3-204ENST00000462482 SETBP1Q9Y6X0 1596 aa23.14■■□□□ 1.3
SKA3-204ENST00000462482 SPHKAPQ2M3C7 1700 aa23.14■■□□□ 1.3
SKA3-204ENST00000462482 BRINP3Q76B58 766 aa23.14■■□□□ 1.29
SKA3-204ENST00000462482 VGFO15240 615 aaPredicted RBP23.13■■□□□ 1.29
SKA3-204ENST00000462482 SLC4A1APQ9BWU0 796 aaKnown RBP23.13■■□□□ 1.29
SKA3-204ENST00000462482 METP08581 1390 aa23.13■■□□□ 1.29
SKA3-204ENST00000462482 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.11■■□□□ 1.29
SKA3-204ENST00000462482 ZNF772Q68DY9 489 aaPredicted RBP23.1■■□□□ 1.29
SKA3-204ENST00000462482 HFM1A2PYH4 1435 aa23.09■■□□□ 1.29
SKA3-204ENST00000462482 COL16A1Q07092 1604 aaPredicted RBP23.09■■□□□ 1.29
SKA3-204ENST00000462482 RPGRIP1LQ68CZ1 1315 aa23.08■■□□□ 1.29
SKA3-204ENST00000462482 AHDC1Q5TGY3 1603 aaPredicted RBP23.08■■□□□ 1.29
SKA3-204ENST00000462482 CLTCL1P53675 1640 aa23.07■■□□□ 1.28
SKA3-204ENST00000462482 NUTM2BA6NNL0 878 aaPredicted RBP23.06■■□□□ 1.28
SKA3-204ENST00000462482 NUTM2EB1AL46 878 aaPredicted RBP23.06■■□□□ 1.28
SKA3-204ENST00000462482 NUTM2AQ8IVF1 878 aaPredicted RBP23.06■■□□□ 1.28
SKA3-204ENST00000462482 NEXMIFQ5QGS0 1516 aa23.06■■□□□ 1.28
SKA3-204ENST00000462482 NRXN3Q9Y4C0 1643 aa23.05■■□□□ 1.28
SKA3-204ENST00000462482 LRRC59Q96AG4 307 aaKnown RBP23.05■■□□□ 1.28
SKA3-204ENST00000462482 ADGRL3Q9HAR2 1447 aa23.05■■□□□ 1.28
SKA3-204ENST00000462482 XRN1Q8IZH2 1706 aaKnown RBP23.05■■□□□ 1.28
SKA3-204ENST00000462482 MST1RQ04912 1400 aa23.04■■□□□ 1.28
SKA3-204ENST00000462482 ASXL1Q8IXJ9 1541 aa23.03■■□□□ 1.28
SKA3-204ENST00000462482 LRP6O75581 1613 aa23.01■■□□□ 1.27
SKA3-204ENST00000462482 SETD5Q9C0A6 1442 aa22.99■■□□□ 1.27
SKA3-204ENST00000462482 PTCH1Q13635 1447 aa22.98■■□□□ 1.27
SKA3-204ENST00000462482 KIF1BO60333 1816 aa22.96■■□□□ 1.27
SKA3-204ENST00000462482 RXRBP28702 533 aa22.96■■□□□ 1.27
SKA3-204ENST00000462482 SHPRHQ149N8 1683 aa22.96■■□□□ 1.27
SKA3-204ENST00000462482 CCDC144AA2RUR9 1427 aa22.94■■□□□ 1.26
SKA3-204ENST00000462482 ROBO2Q9HCK4 1378 aa22.94■■□□□ 1.26
SKA3-204ENST00000462482 FOXD1Q16676 465 aa22.94■■□□□ 1.26
SKA3-204ENST00000462482 C1orf167Q5SNV9 1468 aa22.93■■□□□ 1.26
SKA3-204ENST00000462482 DDX17Q92841 729 aaKnown RBP22.93■■□□□ 1.26
SKA3-204ENST00000462482 AFF2P51816 1311 aa22.92■■□□□ 1.26
SKA3-204ENST00000462482 RGL3Q3MIN7 710 aa22.92■■□□□ 1.26
SKA3-204ENST00000462482 ACIN1Q9UKV3 1341 aaKnown RBP22.91■■□□□ 1.26
SKA3-204ENST00000462482 C8orf37Q96NL8 207 aa22.91■■□□□ 1.26
SKA3-204ENST00000462482 MPHOSPH9Q99550 1183 aa22.9■■□□□ 1.26
SKA3-204ENST00000462482 PNPLA6Q8IY17 1366 aa22.89■■□□□ 1.26
SKA3-204ENST00000462482 ORAI2Q96SN7 254 aa22.88■■□□□ 1.25
SKA3-204ENST00000462482 PRAG1Q86YV5 1406 aa22.88■■□□□ 1.25
SKA3-204ENST00000462482 ANKRD30BQ9BXX2 1392 aa22.88■■□□□ 1.25
SKA3-204ENST00000462482 NHSL1Q5SYE7 1610 aa22.87■■□□□ 1.25
SKA3-204ENST00000462482 NALCNQ8IZF0 1738 aa22.86■■□□□ 1.25
SKA3-204ENST00000462482 NGLY1Q96IV0 654 aa22.86■■□□□ 1.25
SKA3-204ENST00000462482 ADGRF5Q8IZF2 1346 aa22.85■■□□□ 1.25
SKA3-204ENST00000462482 ADAMTS2O95450 1211 aa22.85■■□□□ 1.25
SKA3-204ENST00000462482 STK26Q9P289 416 aa22.85■■□□□ 1.25
SKA3-204ENST00000462482 SOS2Q07890 1332 aaPredicted RBP22.84■■□□□ 1.25
SKA3-204ENST00000462482 ESCO1Q5FWF5 840 aa22.84■■□□□ 1.25
SKA3-204ENST00000462482 QTRT2Q9H974 415 aaKnown RBP22.84■■□□□ 1.25
SKA3-204ENST00000462482 NPHP3Q7Z494 1330 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms