RNA–Protein interactions for RNA: ENST00000462254.1

CSMD3-205, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 457 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-205ENST00000462254 EYA1Q99502 592 aa7.95□□□□□ -1.14
CSMD3-205ENST00000462254 PNMA3Q9UL41 463 aa7.95□□□□□ -1.14
CSMD3-205ENST00000462254 KRI1Q8N9T8 703 aaKnown RBP7.94□□□□□ -1.14
CSMD3-205ENST00000462254 PHOX2BQ99453 314 aa7.94□□□□□ -1.14
CSMD3-205ENST00000462254 MINK1Q8N4C8 1332 aaPredicted RBP7.94□□□□□ -1.14
CSMD3-205ENST00000462254 PRDM2Q13029 1718 aa7.94□□□□□ -1.14
CSMD3-205ENST00000462254 NBPF26B4DH59 902 aa7.93□□□□□ -1.14
CSMD3-205ENST00000462254 SPNS2Q8IVW8 549 aa7.93□□□□□ -1.14
CSMD3-205ENST00000462254 SLC24A3Q9HC58 644 aa7.93□□□□□ -1.14
CSMD3-205ENST00000462254 CCDC88BA6NC98 1476 aa7.93□□□□□ -1.14
CSMD3-205ENST00000462254 MRPL50Q8N5N7 158 aaKnown RBP7.92□□□□□ -1.14
CSMD3-205ENST00000462254 NLRP7Q8WX94 980 aa7.92□□□□□ -1.14
CSMD3-205ENST00000462254 CCDC102AQ96A19 550 aa7.92□□□□□ -1.14
CSMD3-205ENST00000462254 NBPF3Q9H094 633 aa7.92□□□□□ -1.14
CSMD3-205ENST00000462254 METTL3Q86U44 580 aaKnown RBP7.91□□□□□ -1.14
CSMD3-205ENST00000462254 PXYLP1Q8TE99 480 aa7.91□□□□□ -1.14
CSMD3-205ENST00000462254 PODXL2Q9NZ53 605 aa7.91□□□□□ -1.14
CSMD3-205ENST00000462254 OATP04181 439 aa7.9□□□□□ -1.14
CSMD3-205ENST00000462254 FAM98CQ17RN3 349 aaKnown RBP7.9□□□□□ -1.14
CSMD3-205ENST00000462254 STAC3Q96MF2 364 aa7.9□□□□□ -1.14
CSMD3-205ENST00000462254 RCCD1A6NED2 376 aa7.89□□□□□ -1.15
CSMD3-205ENST00000462254 LAPTM4BQ86VI4 370 aa7.89□□□□□ -1.15
CSMD3-205ENST00000462254 RBM46Q8TBY0 533 aaKnown RBP7.89□□□□□ -1.15
CSMD3-205ENST00000462254 ZFRQ96KR1 1074 aaKnown RBP7.89□□□□□ -1.15
CSMD3-205ENST00000462254 AK7Q96M32 723 aa7.87□□□□□ -1.15
CSMD3-205ENST00000462254 MYT1LQ9UL68 1186 aa7.87□□□□□ -1.15
CSMD3-205ENST00000462254 TRIM66O15016 1216 aa7.86□□□□□ -1.15
CSMD3-205ENST00000462254 SAMD7Q7Z3H4 446 aa7.86□□□□□ -1.15
CSMD3-205ENST00000462254 GOLGA8CPA6NN73 597 aa7.85□□□□□ -1.15
CSMD3-205ENST00000462254 DNAJB2P25686 324 aa7.85□□□□□ -1.15
CSMD3-205ENST00000462254 WNT2BQ93097 391 aa7.85□□□□□ -1.15
CSMD3-205ENST00000462254 KCTD12Q96CX2 325 aaKnown RBP7.85□□□□□ -1.15
CSMD3-205ENST00000462254 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.84□□□□□ -1.15
CSMD3-205ENST00000462254 BCAMP50895 628 aa7.84□□□□□ -1.15
CSMD3-205ENST00000462254 MMRN1Q13201 1228 aa7.84□□□□□ -1.15
CSMD3-205ENST00000462254 SWT1Q5T5J6 900 aaKnown RBP7.84□□□□□ -1.15
CSMD3-205ENST00000462254 TMEM134Q9H6X4 195 aa7.84□□□□□ -1.15
CSMD3-205ENST00000462254 MDM2Q00987 491 aaPredicted RBP7.83□□□□□ -1.16
CSMD3-205ENST00000462254 REPIN1Q9BWE0 567 aaKnown RBP7.83□□□□□ -1.16
CSMD3-205ENST00000462254 ANKK1Q8NFD2 765 aa7.82□□□□□ -1.16
CSMD3-205ENST00000462254 LAMC3Q9Y6N6 1575 aa7.82□□□□□ -1.16
CSMD3-205ENST00000462254 SOWAHBA6NEL2 793 aa7.81□□□□□ -1.16
CSMD3-205ENST00000462254 AMHR2Q16671 573 aa7.81□□□□□ -1.16
CSMD3-205ENST00000462254 THSD4Q6ZMP0 1018 aa7.81□□□□□ -1.16
CSMD3-205ENST00000462254 RNF166Q96A37 237 aaPredicted RBP7.81□□□□□ -1.16
CSMD3-205ENST00000462254 TMUB1Q9BVT8 246 aa7.81□□□□□ -1.16
CSMD3-205ENST00000462254 KIF21AQ7Z4S6 1674 aa7.81□□□□□ -1.16
CSMD3-205ENST00000462254 NESP48681 1621 aa7.81□□□□□ -1.16
CSMD3-205ENST00000462254 CFTRP13569 1480 aa7.81□□□□□ -1.16
CSMD3-205ENST00000462254 BRPF1P55201 1214 aaPredicted RBP7.8□□□□□ -1.16
CSMD3-205ENST00000462254 PDE4DQ08499 809 aa7.8□□□□□ -1.16
CSMD3-205ENST00000462254 LRCH3Q96II8 777 aa7.8□□□□□ -1.16
CSMD3-205ENST00000462254 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.8□□□□□ -1.16
CSMD3-205ENST00000462254 RNF40O75150 1001 aa7.79□□□□□ -1.16
CSMD3-205ENST00000462254 HDGFP51858 240 aaKnown RBP7.79□□□□□ -1.16
CSMD3-205ENST00000462254 PARP9Q8IXQ6 854 aa7.79□□□□□ -1.16
CSMD3-205ENST00000462254 TTLL12Q14166 644 aaPredicted RBP7.78□□□□□ -1.16
CSMD3-205ENST00000462254 HPS5Q9UPZ3 1129 aa7.78□□□□□ -1.16
CSMD3-205ENST00000462254 CADPSQ9ULU8 1353 aa7.77□□□□□ -1.17
CSMD3-205ENST00000462254 DDX11L8A8MPP1 907 aa7.77□□□□□ -1.17
CSMD3-205ENST00000462254 SLC10A3P09131 477 aa7.77□□□□□ -1.17
CSMD3-205ENST00000462254 CLCN1P35523 988 aa7.77□□□□□ -1.17
CSMD3-205ENST00000462254 PTPN5P54829 565 aa7.77□□□□□ -1.17
CSMD3-205ENST00000462254 GPBP1L1Q9HC44 474 aaPredicted RBP7.77□□□□□ -1.17
CSMD3-205ENST00000462254 GPCPD1Q9NPB8 672 aa7.77□□□□□ -1.17
CSMD3-205ENST00000462254 WBP1LQ9NX94 342 aa7.77□□□□□ -1.17
CSMD3-205ENST00000462254 ABCC8Q09428 1581 aa7.76□□□□□ -1.17
CSMD3-205ENST00000462254 GIGYF2Q6Y7W6 1299 aaKnown RBP7.76□□□□□ -1.17
CSMD3-205ENST00000462254 SLF2Q8IX21 1173 aa7.76□□□□□ -1.17
CSMD3-205ENST00000462254 FAM217BQ9NTX9 383 aaPredicted RBP7.76□□□□□ -1.17
CSMD3-205ENST00000462254 TSR3Q9UJK0 312 aaKnown RBP7.76□□□□□ -1.17
CSMD3-205ENST00000462254 PLSCR2Q9NRY7 297 aa7.75□□□□□ -1.17
CSMD3-205ENST00000462254 SSTR3P32745 418 aaPredicted RBP7.74□□□□□ -1.17
CSMD3-205ENST00000462254 PPP4CP60510 307 aa7.74□□□□□ -1.17
CSMD3-205ENST00000462254 MS4A1P11836 297 aa7.73□□□□□ -1.17
CSMD3-205ENST00000462254 RDH13Q8NBN7 331 aa7.73□□□□□ -1.17
CSMD3-205ENST00000462254 BIVM-ERCC5R4GMW8 1640 aa7.73□□□□□ -1.17
CSMD3-205ENST00000462254 APLP1P51693 650 aa7.72□□□□□ -1.17
CSMD3-205ENST00000462254 SULF1Q8IWU6 871 aa7.72□□□□□ -1.17
CSMD3-205ENST00000462254 FANCD2Q9BXW9 1451 aa7.72□□□□□ -1.17
CSMD3-205ENST00000462254 SYNJ1O43426 1573 aa7.71□□□□□ -1.17
CSMD3-205ENST00000462254 CFHP08603 1231 aa7.71□□□□□ -1.18
CSMD3-205ENST00000462254 CD46P15529 392 aa7.71□□□□□ -1.18
CSMD3-205ENST00000462254 UBTFP17480 764 aaKnown RBP7.71□□□□□ -1.18
CSMD3-205ENST00000462254 SLC4A3P48751 1232 aa7.71□□□□□ -1.18
CSMD3-205ENST00000462254 NEUROD2Q15784 382 aa7.71□□□□□ -1.18
CSMD3-205ENST00000462254 KDM4CQ9H3R0 1056 aa7.71□□□□□ -1.18
CSMD3-205ENST00000462254 HCSTQ9UBK5 93 aa7.71□□□□□ -1.18
CSMD3-205ENST00000462254 GCGRP47871 477 aa7.69□□□□□ -1.18
CSMD3-205ENST00000462254 TRIM26Q12899 539 aaPredicted RBP7.69□□□□□ -1.18
CSMD3-205ENST00000462254 TOP2BQ02880 1626 aa7.69□□□□□ -1.18
CSMD3-205ENST00000462254 CEP164Q9UPV0 1460 aa7.68□□□□□ -1.18
CSMD3-205ENST00000462254 CUX1P39880 1505 aa7.68□□□□□ -1.18
CSMD3-205ENST00000462254 THOC2Q8NI27 1593 aaKnown RBP7.68□□□□□ -1.18
CSMD3-205ENST00000462254 RSPH4AQ5TD94 716 aa7.68□□□□□ -1.18
CSMD3-205ENST00000462254 NPM2Q86SE8 214 aaKnown RBP7.68□□□□□ -1.18
CSMD3-205ENST00000462254 BEGAINQ9BUH8 593 aa7.68□□□□□ -1.18
CSMD3-205ENST00000462254 FAM117AQ9C073 453 aa7.68□□□□□ -1.18
CSMD3-205ENST00000462254 WRNQ14191 1432 aaPredicted RBP eCLIP7.67□□□□□ -1.18
CSMD3-205ENST00000462254 PDS5BQ9NTI5 1447 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms