RNA–Protein interactions for RNA: ENST00000461433.1

SSBP1-202, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 1,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-202ENST00000461433 NEXMIFQ5QGS0 1516 aa16.46■□□□□ 0.23
SSBP1-202ENST00000461433 RIMS2Q9UQ26 1411 aa16.46■□□□□ 0.23
SSBP1-202ENST00000461433 IFT172Q9UG01 1749 aa16.45■□□□□ 0.22
SSBP1-202ENST00000461433 TXNDC2Q86VQ3 553 aa16.45■□□□□ 0.22
SSBP1-202ENST00000461433 ANKLE2Q86XL3 938 aa16.45■□□□□ 0.22
SSBP1-202ENST00000461433 PPLO60437 1756 aa16.45■□□□□ 0.22
SSBP1-202ENST00000461433 SCAF11Q99590 1463 aaKnown RBP16.44■□□□□ 0.22
SSBP1-202ENST00000461433 RGL3Q3MIN7 710 aa16.44■□□□□ 0.22
SSBP1-202ENST00000461433 ZNF326Q5BKZ1 582 aaKnown RBP16.44■□□□□ 0.22
SSBP1-202ENST00000461433 MED14O60244 1454 aa16.43■□□□□ 0.22
SSBP1-202ENST00000461433 RPGRIP1LQ68CZ1 1315 aa16.43■□□□□ 0.22
SSBP1-202ENST00000461433 NUTM2DQ5VT03 806 aaPredicted RBP16.43■□□□□ 0.22
SSBP1-202ENST00000461433 EID1Q9Y6B2 187 aa16.42■□□□□ 0.22
SSBP1-202ENST00000461433 CLSPNQ9HAW4 1339 aa16.41■□□□□ 0.22
SSBP1-202ENST00000461433 NEUROD1Q13562 356 aa16.4■□□□□ 0.22
SSBP1-202ENST00000461433 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.4■□□□□ 0.22
SSBP1-202ENST00000461433 HDGFP51858 240 aaKnown RBP16.4■□□□□ 0.22
SSBP1-202ENST00000461433 CCER1Q8TC90 406 aaPredicted RBP16.4■□□□□ 0.22
SSBP1-202ENST00000461433 NPHP4O75161 1426 aaPredicted RBP16.39■□□□□ 0.21
SSBP1-202ENST00000461433 IQGAP1P46940 1657 aa16.39■□□□□ 0.21
SSBP1-202ENST00000461433 PLEKHG1Q9ULL1 1385 aa16.38■□□□□ 0.21
SSBP1-202ENST00000461433 NRXN3Q9Y4C0 1643 aa16.37■□□□□ 0.21
SSBP1-202ENST00000461433 VGFO15240 615 aaPredicted RBP16.37■□□□□ 0.21
SSBP1-202ENST00000461433 ADGRF5Q8IZF2 1346 aa16.36■□□□□ 0.21
SSBP1-202ENST00000461433 PPP1R15AO75807 674 aaPredicted RBP16.36■□□□□ 0.21
SSBP1-202ENST00000461433 MYOM2P54296 1465 aa16.35■□□□□ 0.21
SSBP1-202ENST00000461433 NRXN1Q9ULB1 1477 aa16.35■□□□□ 0.21
SSBP1-202ENST00000461433 DCAF11Q8TEB1 546 aa16.35■□□□□ 0.21
SSBP1-202ENST00000461433 L3MBTL2Q969R5 705 aa16.35■□□□□ 0.21
SSBP1-202ENST00000461433 DMRT2Q9Y5R5 561 aa16.35■□□□□ 0.21
SSBP1-202ENST00000461433 SETBP1Q9Y6X0 1596 aa16.35■□□□□ 0.21
SSBP1-202ENST00000461433 ADAMTS13Q76LX8 1427 aa16.34■□□□□ 0.21
SSBP1-202ENST00000461433 KDM2AQ9Y2K7 1162 aa16.32■□□□□ 0.2
SSBP1-202ENST00000461433 SETD1AO15047 1707 aaKnown RBP16.32■□□□□ 0.2
SSBP1-202ENST00000461433 SLC26A8Q96RN1 970 aa16.31■□□□□ 0.2
SSBP1-202ENST00000461433 PIK3C2GO75747 1445 aa16.31■□□□□ 0.2
SSBP1-202ENST00000461433 STAC3Q96MF2 364 aa16.3■□□□□ 0.2
SSBP1-202ENST00000461433 ALKQ9UM73 1620 aa16.3■□□□□ 0.2
SSBP1-202ENST00000461433 TBX22Q9Y458 520 aa16.3■□□□□ 0.2
SSBP1-202ENST00000461433 DIP2AQ14689 1571 aa16.29■□□□□ 0.2
SSBP1-202ENST00000461433 BCANQ96GW7 911 aa16.29■□□□□ 0.2
SSBP1-202ENST00000461433 TONSLQ96HA7 1378 aa16.28■□□□□ 0.2
SSBP1-202ENST00000461433 STRCP1A6NGW2 1772 aa16.27■□□□□ 0.19
SSBP1-202ENST00000461433 PRAG1Q86YV5 1406 aa16.26■□□□□ 0.19
SSBP1-202ENST00000461433 METP08581 1390 aa16.26■□□□□ 0.19
SSBP1-202ENST00000461433 CHD2O14647 1828 aaKnown RBP16.26■□□□□ 0.19
SSBP1-202ENST00000461433 C14orf93Q9H972 538 aaKnown RBP16.26■□□□□ 0.19
SSBP1-202ENST00000461433 CFAP70Q5T0N1 1121 aa16.25■□□□□ 0.19
SSBP1-202ENST00000461433 ZNF335Q9H4Z2 1342 aaPredicted RBP16.25■□□□□ 0.19
SSBP1-202ENST00000461433 LAMC1P11047 1609 aa16.25■□□□□ 0.19
SSBP1-202ENST00000461433 TIMELESSQ9UNS1 1208 aa16.24■□□□□ 0.19
SSBP1-202ENST00000461433 ASXL1Q8IXJ9 1541 aa16.24■□□□□ 0.19
SSBP1-202ENST00000461433 PTPRUQ92729 1446 aa16.24■□□□□ 0.19
SSBP1-202ENST00000461433 NBPF8Q3BBV2 869 aa16.23■□□□□ 0.19
SSBP1-202ENST00000461433 PIK3R4Q99570 1358 aa16.23■□□□□ 0.19
SSBP1-202ENST00000461433 KIAA1210Q9ULL0 1709 aa16.23■□□□□ 0.19
SSBP1-202ENST00000461433 LTBP4Q8N2S1 1624 aa16.22■□□□□ 0.19
SSBP1-202ENST00000461433 NWD1Q149M9 1564 aa16.22■□□□□ 0.19
SSBP1-202ENST00000461433 ADGRB1O14514 1584 aa16.21■□□□□ 0.18
SSBP1-202ENST00000461433 KCNA6P17658 529 aa16.21■□□□□ 0.18
SSBP1-202ENST00000461433 TMEM132EQ6IEE7 984 aa16.21■□□□□ 0.18
SSBP1-202ENST00000461433 XRN1Q8IZH2 1706 aaKnown RBP16.2■□□□□ 0.18
SSBP1-202ENST00000461433 TRPM1Q7Z4N2 1603 aa16.2■□□□□ 0.18
SSBP1-202ENST00000461433 NBPF1Q3BBV0 1214 aa16.18■□□□□ 0.18
SSBP1-202ENST00000461433 AMOTL2Q9Y2J4 779 aa16.18■□□□□ 0.18
SSBP1-202ENST00000461433 YTHDC2Q9H6S0 1430 aaKnown RBP16.16■□□□□ 0.18
SSBP1-202ENST00000461433 CPS1P31327 1500 aa16.16■□□□□ 0.18
SSBP1-202ENST00000461433 LRPPRCP42704 1394 aaKnown RBP16.16■□□□□ 0.18
SSBP1-202ENST00000461433 NKTRP30414 1462 aaKnown RBP16.15■□□□□ 0.18
SSBP1-202ENST00000461433 KNDC1Q76NI1 1749 aa16.15■□□□□ 0.18
SSBP1-202ENST00000461433 XIRP1Q702N8 1843 aaKnown RBP16.15■□□□□ 0.18
SSBP1-202ENST00000461433 LRRC7Q96NW7 1537 aa16.15■□□□□ 0.18
SSBP1-202ENST00000461433 ABCC11Q96J66 1382 aa16.14■□□□□ 0.17
SSBP1-202ENST00000461433 TECPR2O15040 1411 aa16.14■□□□□ 0.17
SSBP1-202ENST00000461433 RALGAPBQ86X10 1494 aa16.13■□□□□ 0.17
SSBP1-202ENST00000461433 STK26Q9P289 416 aa16.13■□□□□ 0.17
SSBP1-202ENST00000461433 ROBO2Q9HCK4 1378 aa16.13■□□□□ 0.17
SSBP1-202ENST00000461433 GPRASP1Q5JY77 1395 aa16.11■□□□□ 0.17
SSBP1-202ENST00000461433 PTCH1Q13635 1447 aa16.11■□□□□ 0.17
SSBP1-202ENST00000461433 PROSER2Q86WR7 435 aaPredicted RBP16.11■□□□□ 0.17
SSBP1-202ENST00000461433 RBM33Q96EV2 1170 aaKnown RBP16.11■□□□□ 0.17
SSBP1-202ENST00000461433 ROCK2O75116 1388 aaKnown RBP16.1■□□□□ 0.17
SSBP1-202ENST00000461433 DLC1Q96QB1 1528 aa16.09■□□□□ 0.17
SSBP1-202ENST00000461433 TMEM94Q12767 1356 aa16.09■□□□□ 0.17
SSBP1-202ENST00000461433 ILDR1Q86SU0 546 aaPredicted RBP16.09■□□□□ 0.17
SSBP1-202ENST00000461433 SIRT1Q96EB6 747 aa16.09■□□□□ 0.17
SSBP1-202ENST00000461433 TRAK1Q9UPV9 953 aa16.09■□□□□ 0.17
SSBP1-202ENST00000461433 ARHGEF28Q8N1W1 1705 aaKnown RBP16.09■□□□□ 0.17
SSBP1-202ENST00000461433 PLEKHH1Q9ULM0 1364 aa16.08■□□□□ 0.16
SSBP1-202ENST00000461433 WAPLQ7Z5K2 1190 aa16.08■□□□□ 0.16
SSBP1-202ENST00000461433 CERKQ8TCT0 537 aa16.08■□□□□ 0.16
SSBP1-202ENST00000461433 FAM135BQ49AJ0 1406 aa16.07■□□□□ 0.16
SSBP1-202ENST00000461433 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.06■□□□□ 0.16
SSBP1-202ENST00000461433 NCOA3Q9Y6Q9 1424 aa16.06■□□□□ 0.16
SSBP1-202ENST00000461433 CARD11Q9BXL7 1154 aa16.05■□□□□ 0.16
SSBP1-202ENST00000461433 NALCNQ8IZF0 1738 aa16.05■□□□□ 0.16
SSBP1-202ENST00000461433 PRAM1Q96QH2 718 aa16.05■□□□□ 0.16
SSBP1-202ENST00000461433 IQSEC2Q5JU85 1478 aa16.04■□□□□ 0.16
SSBP1-202ENST00000461433 ADGRL3Q9HAR2 1447 aa16.02■□□□□ 0.15
SSBP1-202ENST00000461433 SAFB2Q14151 953 aaKnown RBP eCLIP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms