RNA–Protein interactions for RNA: ENST00000461187.5

SMPD4-216, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 3

Gene SMPD4, Length 659 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-216ENST00000461187 KCNA6P17658 529 aa22.66■■□□□ 1.22
SMPD4-216ENST00000461187 SLC26A8Q96RN1 970 aa22.66■■□□□ 1.22
SMPD4-216ENST00000461187 ZFYVE9O95405 1425 aa22.65■■□□□ 1.22
SMPD4-216ENST00000461187 SENP3Q9H4L4 574 aaPredicted RBP22.64■■□□□ 1.21
SMPD4-216ENST00000461187 TMEM94Q12767 1356 aa22.63■■□□□ 1.21
SMPD4-216ENST00000461187 NKTRP30414 1462 aaKnown RBP22.61■■□□□ 1.21
SMPD4-216ENST00000461187 RIMS2Q9UQ26 1411 aa22.61■■□□□ 1.21
SMPD4-216ENST00000461187 ROBO1Q9Y6N7 1651 aa22.6■■□□□ 1.21
SMPD4-216ENST00000461187 PLEKHG1Q9ULL1 1385 aa22.6■■□□□ 1.21
SMPD4-216ENST00000461187 PROSER2Q86WR7 435 aaPredicted RBP22.59■■□□□ 1.21
SMPD4-216ENST00000461187 FAM135BQ49AJ0 1406 aa22.58■■□□□ 1.21
SMPD4-216ENST00000461187 RBM33Q96EV2 1170 aaKnown RBP22.57■■□□□ 1.2
SMPD4-216ENST00000461187 BCANQ96GW7 911 aa22.57■■□□□ 1.2
SMPD4-216ENST00000461187 SPHKAPQ2M3C7 1700 aa22.57■■□□□ 1.2
SMPD4-216ENST00000461187 PPARGC1BQ86YN6 1023 aaKnown RBP22.56■■□□□ 1.2
SMPD4-216ENST00000461187 ITGAEP38570 1179 aa22.55■■□□□ 1.2
SMPD4-216ENST00000461187 NUP155O75694 1391 aa22.54■■□□□ 1.2
SMPD4-216ENST00000461187 HDGFP51858 240 aaKnown RBP22.54■■□□□ 1.2
SMPD4-216ENST00000461187 PPP1R15AO75807 674 aaPredicted RBP22.53■■□□□ 1.2
SMPD4-216ENST00000461187 PHF23Q9BUL5 403 aaPredicted RBP22.53■■□□□ 1.2
SMPD4-216ENST00000461187 CHGAP10645 457 aaKnown RBP22.52■■□□□ 1.2
SMPD4-216ENST00000461187 DIP2AQ14689 1571 aa22.51■■□□□ 1.19
SMPD4-216ENST00000461187 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.5■■□□□ 1.19
SMPD4-216ENST00000461187 TBX22Q9Y458 520 aa22.5■■□□□ 1.19
SMPD4-216ENST00000461187 MSH6P52701 1360 aa22.5■■□□□ 1.19
SMPD4-216ENST00000461187 ADAMTS13Q76LX8 1427 aa22.49■■□□□ 1.19
SMPD4-216ENST00000461187 PHLPP1O60346 1717 aa22.49■■□□□ 1.19
SMPD4-216ENST00000461187 NUTM2DQ5VT03 806 aaPredicted RBP22.48■■□□□ 1.19
SMPD4-216ENST00000461187 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.47■■□□□ 1.19
SMPD4-216ENST00000461187 NRXN3Q9Y4C0 1643 aa22.45■■□□□ 1.18
SMPD4-216ENST00000461187 KIF1BO60333 1816 aa22.44■■□□□ 1.18
SMPD4-216ENST00000461187 TRPM2O94759 1503 aa22.43■■□□□ 1.18
SMPD4-216ENST00000461187 RRBP1Q9P2E9 1410 aaKnown RBP22.43■■□□□ 1.18
SMPD4-216ENST00000461187 NCOA3Q9Y6Q9 1424 aa22.43■■□□□ 1.18
SMPD4-216ENST00000461187 PIK3R4Q99570 1358 aa22.43■■□□□ 1.18
SMPD4-216ENST00000461187 SLAIN2Q9P270 581 aa22.43■■□□□ 1.18
SMPD4-216ENST00000461187 RGS17Q9UGC6 210 aaPredicted RBP22.42■■□□□ 1.18
SMPD4-216ENST00000461187 CLTCL1P53675 1640 aa22.4■■□□□ 1.18
SMPD4-216ENST00000461187 SETBP1Q9Y6X0 1596 aa22.39■■□□□ 1.18
SMPD4-216ENST00000461187 XRN1Q8IZH2 1706 aaKnown RBP22.39■■□□□ 1.17
SMPD4-216ENST00000461187 COL16A1Q07092 1604 aaPredicted RBP22.39■■□□□ 1.17
SMPD4-216ENST00000461187 PTPRUQ92729 1446 aa22.38■■□□□ 1.17
SMPD4-216ENST00000461187 NAIPQ13075 1403 aa22.37■■□□□ 1.17
SMPD4-216ENST00000461187 C14orf37Q86TY3 774 aa22.34■■□□□ 1.17
SMPD4-216ENST00000461187 AMOTL2Q9Y2J4 779 aa22.34■■□□□ 1.17
SMPD4-216ENST00000461187 NEXMIFQ5QGS0 1516 aa22.34■■□□□ 1.17
SMPD4-216ENST00000461187 C19orf44Q9H6X5 657 aa22.33■■□□□ 1.17
SMPD4-216ENST00000461187 AHDC1Q5TGY3 1603 aaPredicted RBP22.31■■□□□ 1.16
SMPD4-216ENST00000461187 ZNF326Q5BKZ1 582 aaKnown RBP22.31■■□□□ 1.16
SMPD4-216ENST00000461187 CADPS2Q86UW7 1296 aa22.31■■□□□ 1.16
SMPD4-216ENST00000461187 JCADQ9P266 1359 aa22.3■■□□□ 1.16
SMPD4-216ENST00000461187 SHPRHQ149N8 1683 aa22.3■■□□□ 1.16
SMPD4-216ENST00000461187 ATF3P18847 181 aa22.29■■□□□ 1.16
SMPD4-216ENST00000461187 SETD1AO15047 1707 aaKnown RBP22.28■■□□□ 1.16
SMPD4-216ENST00000461187 POTEAQ6S8J7 498 aa22.28■■□□□ 1.16
SMPD4-216ENST00000461187 METP08581 1390 aa22.26■■□□□ 1.15
SMPD4-216ENST00000461187 NALCNQ8IZF0 1738 aa22.26■■□□□ 1.15
SMPD4-216ENST00000461187 HFM1A2PYH4 1435 aa22.26■■□□□ 1.15
SMPD4-216ENST00000461187 DCCP43146 1447 aa22.26■■□□□ 1.15
SMPD4-216ENST00000461187 PPLO60437 1756 aa22.25■■□□□ 1.15
SMPD4-216ENST00000461187 NHSL1Q5SYE7 1610 aa22.24■■□□□ 1.15
SMPD4-216ENST00000461187 LRP6O75581 1613 aa22.21■■□□□ 1.15
SMPD4-216ENST00000461187 BRINP3Q76B58 766 aa22.21■■□□□ 1.15
SMPD4-216ENST00000461187 TRIM52Q96A61 297 aa22.21■■□□□ 1.15
SMPD4-216ENST00000461187 MST1RQ04912 1400 aa22.2■■□□□ 1.14
SMPD4-216ENST00000461187 ASXL1Q8IXJ9 1541 aa22.2■■□□□ 1.14
SMPD4-216ENST00000461187 SPATA31A6Q5VVP1 1343 aa22.19■■□□□ 1.14
SMPD4-216ENST00000461187 ADGRL3Q9HAR2 1447 aa22.17■■□□□ 1.14
SMPD4-216ENST00000461187 SLC4A1APQ9BWU0 796 aaKnown RBP22.16■■□□□ 1.14
SMPD4-216ENST00000461187 VGFO15240 615 aaPredicted RBP22.14■■□□□ 1.13
SMPD4-216ENST00000461187 IFT172Q9UG01 1749 aa22.13■■□□□ 1.13
SMPD4-216ENST00000461187 RPGRIP1LQ68CZ1 1315 aa22.12■■□□□ 1.13
SMPD4-216ENST00000461187 PTCH1Q13635 1447 aa22.12■■□□□ 1.13
SMPD4-216ENST00000461187 SETD5Q9C0A6 1442 aa22.12■■□□□ 1.13
SMPD4-216ENST00000461187 LAMC1P11047 1609 aa22.1■■□□□ 1.13
SMPD4-216ENST00000461187 MEX3CQ5U5Q3 659 aaKnown RBP22.1■■□□□ 1.13
SMPD4-216ENST00000461187 PRAG1Q86YV5 1406 aa22.09■■□□□ 1.13
SMPD4-216ENST00000461187 ROBO2Q9HCK4 1378 aa22.09■■□□□ 1.13
SMPD4-216ENST00000461187 FOXD1Q16676 465 aa22.07■■□□□ 1.12
SMPD4-216ENST00000461187 C1orf167Q5SNV9 1468 aa22.06■■□□□ 1.12
SMPD4-216ENST00000461187 NUTM2BA6NNL0 878 aaPredicted RBP22.05■■□□□ 1.12
SMPD4-216ENST00000461187 NUTM2EB1AL46 878 aaPredicted RBP22.05■■□□□ 1.12
SMPD4-216ENST00000461187 ZNF772Q68DY9 489 aaPredicted RBP22.05■■□□□ 1.12
SMPD4-216ENST00000461187 NUTM2AQ8IVF1 878 aaPredicted RBP22.05■■□□□ 1.12
SMPD4-216ENST00000461187 DDX17Q92841 729 aaKnown RBP22.05■■□□□ 1.12
SMPD4-216ENST00000461187 LRRC59Q96AG4 307 aaKnown RBP22.04■■□□□ 1.12
SMPD4-216ENST00000461187 CCDC144AA2RUR9 1427 aa22.02■■□□□ 1.12
SMPD4-216ENST00000461187 PNPLA6Q8IY17 1366 aa22.01■■□□□ 1.11
SMPD4-216ENST00000461187 SPATA31E1Q6ZUB1 1445 aa22.01■■□□□ 1.11
SMPD4-216ENST00000461187 KNDC1Q76NI1 1749 aa22■■□□□ 1.11
SMPD4-216ENST00000461187 MPHOSPH9Q99550 1183 aa22■■□□□ 1.11
SMPD4-216ENST00000461187 ADGRF5Q8IZF2 1346 aa22■■□□□ 1.11
SMPD4-216ENST00000461187 CDC42BPGQ6DT37 1551 aa21.99■■□□□ 1.11
SMPD4-216ENST00000461187 ORAI2Q96SN7 254 aa21.98■■□□□ 1.11
SMPD4-216ENST00000461187 RGL3Q3MIN7 710 aa21.97■■□□□ 1.11
SMPD4-216ENST00000461187 AFF2P51816 1311 aa21.97■■□□□ 1.11
SMPD4-216ENST00000461187 RXRBP28702 533 aa21.95■■□□□ 1.1
SMPD4-216ENST00000461187 SOS2Q07890 1332 aaPredicted RBP21.95■■□□□ 1.1
SMPD4-216ENST00000461187 ANKRD30BQ9BXX2 1392 aa21.95■■□□□ 1.1
SMPD4-216ENST00000461187 COL22A1Q8NFW1 1626 aaPredicted RBP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms