RNA–Protein interactions for RNA: ENST00000461159.6

HDAC9-219, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,557 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-219ENST00000461159 NPATQ14207 1427 aa11.52□□□□□ -0.57
HDAC9-219ENST00000461159 ZMYM4Q5VZL5 1548 aa11.52□□□□□ -0.57
HDAC9-219ENST00000461159 HSPA5P11021 654 aaKnown RBP11.51□□□□□ -0.57
HDAC9-219ENST00000461159 KCNA4P22459 653 aa11.51□□□□□ -0.57
HDAC9-219ENST00000461159 BRD2P25440 801 aaKnown RBP11.51□□□□□ -0.57
HDAC9-219ENST00000461159 TET3O43151 1660 aa11.5□□□□□ -0.57
HDAC9-219ENST00000461159 ABCC3O15438 1527 aa11.49□□□□□ -0.57
HDAC9-219ENST00000461159 RNF17Q9BXT8 1623 aaKnown RBP11.49□□□□□ -0.57
HDAC9-219ENST00000461159 C11orf95C9JLR9 678 aaPredicted RBP11.49□□□□□ -0.57
HDAC9-219ENST00000461159 NBPF1Q3BBV0 1214 aa11.49□□□□□ -0.57
HDAC9-219ENST00000461159 VSIG10Q8N0Z9 540 aa11.48□□□□□ -0.57
HDAC9-219ENST00000461159 ESF1Q9H501 851 aaKnown RBP11.48□□□□□ -0.57
HDAC9-219ENST00000461159 EFCAB6Q5THR3 1501 aa11.48□□□□□ -0.57
HDAC9-219ENST00000461159 PTPRTO14522 1441 aa11.48□□□□□ -0.57
HDAC9-219ENST00000461159 CEBPAP49715 358 aaPredicted RBP11.48□□□□□ -0.57
HDAC9-219ENST00000461159 NPM2Q86SE8 214 aaKnown RBP11.47□□□□□ -0.57
HDAC9-219ENST00000461159 CLTCL1P53675 1640 aa11.47□□□□□ -0.57
HDAC9-219ENST00000461159 SPHKAPQ2M3C7 1700 aa11.47□□□□□ -0.57
HDAC9-219ENST00000461159 IDI1Q13907 227 aa11.47□□□□□ -0.57
HDAC9-219ENST00000461159 SPATA31E1Q6ZUB1 1445 aa11.46□□□□□ -0.57
HDAC9-219ENST00000461159 ARHGEF40Q8TER5 1519 aa11.46□□□□□ -0.58
HDAC9-219ENST00000461159 EIF4G2P78344 907 aaKnown RBP eCLIP11.45□□□□□ -0.58
HDAC9-219ENST00000461159 IL27Q8NEV9 243 aa11.45□□□□□ -0.58
HDAC9-219ENST00000461159 CARD11Q9BXL7 1154 aa11.45□□□□□ -0.58
HDAC9-219ENST00000461159 CHMP4AQ9BY43 222 aa11.45□□□□□ -0.58
HDAC9-219ENST00000461159 TRPM2O94759 1503 aa11.45□□□□□ -0.58
HDAC9-219ENST00000461159 AMER1Q5JTC6 1135 aaPredicted RBP11.45□□□□□ -0.58
HDAC9-219ENST00000461159 POLR3GLQ9BT43 218 aa11.45□□□□□ -0.58
HDAC9-219ENST00000461159 BCORL1Q5H9F3 1711 aa11.44□□□□□ -0.58
HDAC9-219ENST00000461159 UHRF1BP1Q6BDS2 1440 aa11.44□□□□□ -0.58
HDAC9-219ENST00000461159 WASHC2AQ641Q2 1341 aa11.44□□□□□ -0.58
HDAC9-219ENST00000461159 LMTK2Q8IWU2 1503 aa11.43□□□□□ -0.58
HDAC9-219ENST00000461159 CAMSAP1Q5T5Y3 1602 aa11.43□□□□□ -0.58
HDAC9-219ENST00000461159 ADGRF5Q8IZF2 1346 aa11.43□□□□□ -0.58
HDAC9-219ENST00000461159 PRAG1Q86YV5 1406 aa11.42□□□□□ -0.58
HDAC9-219ENST00000461159 ROCK2O75116 1388 aaKnown RBP11.42□□□□□ -0.58
HDAC9-219ENST00000461159 STAG3Q9UJ98 1225 aa11.42□□□□□ -0.58
HDAC9-219ENST00000461159 CLTCQ00610 1675 aaKnown RBP11.42□□□□□ -0.58
HDAC9-219ENST00000461159 ZMYM3Q14202 1370 aa11.41□□□□□ -0.58
HDAC9-219ENST00000461159 USP47Q96K76 1375 aa11.4□□□□□ -0.58
HDAC9-219ENST00000461159 CFAP70Q5T0N1 1121 aa11.4□□□□□ -0.58
HDAC9-219ENST00000461159 ST20-MTHFSA0A0A6YYL1 179 aa11.4□□□□□ -0.58
HDAC9-219ENST00000461159 CNGB1Q14028 1251 aaPredicted RBP11.4□□□□□ -0.58
HDAC9-219ENST00000461159 RALGAPBQ86X10 1494 aa11.4□□□□□ -0.58
HDAC9-219ENST00000461159 AGLP35573 1532 aa11.4□□□□□ -0.59
HDAC9-219ENST00000461159 NOS1P29475 1434 aa11.39□□□□□ -0.59
HDAC9-219ENST00000461159 SYNMO15061 1565 aa11.39□□□□□ -0.59
HDAC9-219ENST00000461159 MROH2AA6NES4 1674 aa11.39□□□□□ -0.59
HDAC9-219ENST00000461159 CNTLNQ9NXG0 1405 aa11.38□□□□□ -0.59
HDAC9-219ENST00000461159 TRPM1Q7Z4N2 1603 aa11.38□□□□□ -0.59
HDAC9-219ENST00000461159 TMEM132EQ6IEE7 984 aa11.38□□□□□ -0.59
HDAC9-219ENST00000461159 REREQ9P2R6 1566 aa11.38□□□□□ -0.59
HDAC9-219ENST00000461159 DHX37Q8IY37 1157 aaKnown RBP11.37□□□□□ -0.59
HDAC9-219ENST00000461159 ARHGAP31Q2M1Z3 1444 aa11.37□□□□□ -0.59
HDAC9-219ENST00000461159 SLC52A1Q9NWF4 448 aa11.36□□□□□ -0.59
HDAC9-219ENST00000461159 KIF1BO60333 1816 aa11.36□□□□□ -0.59
HDAC9-219ENST00000461159 KIF7Q2M1P5 1343 aa11.36□□□□□ -0.59
HDAC9-219ENST00000461159 HNRNPUQ00839 825 aaKnown RBP eCLIP11.36□□□□□ -0.59
HDAC9-219ENST00000461159 ERVK-7P63135 1459 aa11.36□□□□□ -0.59
HDAC9-219ENST00000461159 SAMD1Q6SPF0 538 aaPredicted RBP11.35□□□□□ -0.59
HDAC9-219ENST00000461159 PPP6R1Q9UPN7 881 aa11.35□□□□□ -0.59
HDAC9-219ENST00000461159 PREX1Q8TCU6 1659 aa11.35□□□□□ -0.59
HDAC9-219ENST00000461159 POLR1AO95602 1720 aaPredicted RBP11.35□□□□□ -0.59
HDAC9-219ENST00000461159 CCDC7Q96M83 1385 aa11.35□□□□□ -0.59
HDAC9-219ENST00000461159 ZC3H13Q5T200 1668 aaKnown RBP11.34□□□□□ -0.59
HDAC9-219ENST00000461159 MADDQ8WXG6 1647 aa11.34□□□□□ -0.59
HDAC9-219ENST00000461159 NAP1L5Q96NT1 182 aaPredicted RBP11.34□□□□□ -0.59
HDAC9-219ENST00000461159 PAXIP1Q6ZW49 1069 aaPredicted RBP11.33□□□□□ -0.6
HDAC9-219ENST00000461159 MYO5BQ9ULV0 1848 aa11.33□□□□□ -0.6
HDAC9-219ENST00000461159 NEURL4Q96JN8 1562 aa11.33□□□□□ -0.6
HDAC9-219ENST00000461159 ADGRB3O60242 1522 aa11.33□□□□□ -0.6
HDAC9-219ENST00000461159 C14orf37Q86TY3 774 aa11.32□□□□□ -0.6
HDAC9-219ENST00000461159 TRAK1Q9UPV9 953 aa11.32□□□□□ -0.6
HDAC9-219ENST00000461159 GPRASP1Q5JY77 1395 aa11.32□□□□□ -0.6
HDAC9-219ENST00000461159 SAFB2Q14151 953 aaKnown RBP eCLIP11.31□□□□□ -0.6
HDAC9-219ENST00000461159 STK26Q9P289 416 aa11.31□□□□□ -0.6
HDAC9-219ENST00000461159 PIK3C2BO00750 1634 aa11.31□□□□□ -0.6
HDAC9-219ENST00000461159 IFT172Q9UG01 1749 aa11.31□□□□□ -0.6
HDAC9-219ENST00000461159 LAMC1P11047 1609 aa11.3□□□□□ -0.6
HDAC9-219ENST00000461159 TNRQ92752 1358 aa11.3□□□□□ -0.6
HDAC9-219ENST00000461159 VGFO15240 615 aaPredicted RBP11.3□□□□□ -0.6
HDAC9-219ENST00000461159 TESK2Q96S53 571 aa11.3□□□□□ -0.6
HDAC9-219ENST00000461159 PPP4R2Q9NY27 417 aa11.3□□□□□ -0.6
HDAC9-219ENST00000461159 FBXO3Q9UK99 471 aa11.29□□□□□ -0.6
HDAC9-219ENST00000461159 CNKSR2Q8WXI2 1034 aa11.28□□□□□ -0.6
HDAC9-219ENST00000461159 PPLO60437 1756 aa11.28□□□□□ -0.6
HDAC9-219ENST00000461159 IRX6P78412 446 aaPredicted RBP11.27□□□□□ -0.6
HDAC9-219ENST00000461159 TAOK2Q9UL54 1235 aa11.27□□□□□ -0.6
HDAC9-219ENST00000461159 TMEM131LA2VDJ0 1609 aa11.27□□□□□ -0.6
HDAC9-219ENST00000461159 SPATA31D1Q6ZQQ2 1576 aa11.27□□□□□ -0.61
HDAC9-219ENST00000461159 HAP1P54257 671 aaPredicted RBP11.27□□□□□ -0.61
HDAC9-219ENST00000461159 STAC3Q96MF2 364 aa11.27□□□□□ -0.61
HDAC9-219ENST00000461159 C14orf93Q9H972 538 aaKnown RBP11.27□□□□□ -0.61
HDAC9-219ENST00000461159 FER1L4A9Z1Z3 1794 aa11.27□□□□□ -0.61
HDAC9-219ENST00000461159 DISP3Q9P2K9 1392 aa11.27□□□□□ -0.61
HDAC9-219ENST00000461159 A2ML1A8K2U0 1454 aa11.27□□□□□ -0.61
HDAC9-219ENST00000461159 MYOM2P54296 1465 aa11.27□□□□□ -0.61
HDAC9-219ENST00000461159 NAP1L2Q9ULW6 460 aaPredicted RBP11.26□□□□□ -0.61
HDAC9-219ENST00000461159 NEXMIFQ5QGS0 1516 aa11.26□□□□□ -0.61
HDAC9-219ENST00000461159 RPGRIP1LQ68CZ1 1315 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms