RNA–Protein interactions for RNA: ENST00000461055.2

NEDD9-206, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 592 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-206ENST00000461055 ZNF326Q5BKZ1 582 aaKnown RBP15.37■□□□□ 0.05
NEDD9-206ENST00000461055 CEP152O94986 1710 aa15.37■□□□□ 0.05
NEDD9-206ENST00000461055 ABCC3O15438 1527 aa15.36■□□□□ 0.05
NEDD9-206ENST00000461055 ROCK2O75116 1388 aaKnown RBP15.36■□□□□ 0.05
NEDD9-206ENST00000461055 LAMC1P11047 1609 aa15.35■□□□□ 0.05
NEDD9-206ENST00000461055 ANP32CO43423 234 aa15.35■□□□□ 0.05
NEDD9-206ENST00000461055 HIRIP3Q9BW71 556 aaPredicted RBP15.35■□□□□ 0.05
NEDD9-206ENST00000461055 CCDC7Q96M83 1385 aa15.35■□□□□ 0.05
NEDD9-206ENST00000461055 WASHC2AQ641Q2 1341 aa15.34■□□□□ 0.05
NEDD9-206ENST00000461055 RPGRIP1LQ68CZ1 1315 aa15.34■□□□□ 0.05
NEDD9-206ENST00000461055 CLTCL1P53675 1640 aa15.33■□□□□ 0.04
NEDD9-206ENST00000461055 MROH2AA6NES4 1674 aa15.33■□□□□ 0.04
NEDD9-206ENST00000461055 CCER2I3L3R5 266 aa15.33■□□□□ 0.04
NEDD9-206ENST00000461055 SLC24A1O60721 1099 aa15.33■□□□□ 0.04
NEDD9-206ENST00000461055 SPATA31D1Q6ZQQ2 1576 aa15.32■□□□□ 0.04
NEDD9-206ENST00000461055 TRPM1Q7Z4N2 1603 aa15.32■□□□□ 0.04
NEDD9-206ENST00000461055 PIP4K2BP78356 416 aa15.32■□□□□ 0.04
NEDD9-206ENST00000461055 SLC52A1Q9NWF4 448 aa15.31■□□□□ 0.04
NEDD9-206ENST00000461055 SCAF1Q9H7N4 1312 aaKnown RBP15.31■□□□□ 0.04
NEDD9-206ENST00000461055 NOS1P29475 1434 aa15.31■□□□□ 0.04
NEDD9-206ENST00000461055 CEP170BQ9Y4F5 1589 aaPredicted RBP15.31■□□□□ 0.04
NEDD9-206ENST00000461055 MYO3AQ8NEV4 1616 aa15.31■□□□□ 0.04
NEDD9-206ENST00000461055 POLR1AO95602 1720 aaPredicted RBP15.31■□□□□ 0.04
NEDD9-206ENST00000461055 KIF1BO60333 1816 aa15.3■□□□□ 0.04
NEDD9-206ENST00000461055 HSPA1LP34931 641 aa15.3■□□□□ 0.04
NEDD9-206ENST00000461055 MYOM2P54296 1465 aa15.3■□□□□ 0.04
NEDD9-206ENST00000461055 IQSEC2Q5JU85 1478 aa15.29■□□□□ 0.04
NEDD9-206ENST00000461055 KIF7Q2M1P5 1343 aa15.27■□□□□ 0.04
NEDD9-206ENST00000461055 KIAA1210Q9ULL0 1709 aa15.27■□□□□ 0.04
NEDD9-206ENST00000461055 A2ML1A8K2U0 1454 aa15.27■□□□□ 0.03
NEDD9-206ENST00000461055 TNRQ92752 1358 aa15.26■□□□□ 0.03
NEDD9-206ENST00000461055 ADGRB3O60242 1522 aa15.25■□□□□ 0.03
NEDD9-206ENST00000461055 ZNF142P52746 1687 aaPredicted RBP15.25■□□□□ 0.03
NEDD9-206ENST00000461055 ST20-MTHFSA0A0A6YYL1 179 aa15.24■□□□□ 0.03
NEDD9-206ENST00000461055 C11orf95C9JLR9 678 aaPredicted RBP15.23■□□□□ 0.03
NEDD9-206ENST00000461055 ANKLE2Q86XL3 938 aa15.23■□□□□ 0.03
NEDD9-206ENST00000461055 NRXN1Q9ULB1 1477 aa15.22■□□□□ 0.03
NEDD9-206ENST00000461055 PIK3C2BO00750 1634 aa15.22■□□□□ 0.03
NEDD9-206ENST00000461055 NBPF1Q3BBV0 1214 aa15.22■□□□□ 0.03
NEDD9-206ENST00000461055 EIF3AQ14152 1382 aaKnown RBP15.22■□□□□ 0.03
NEDD9-206ENST00000461055 VGFO15240 615 aaPredicted RBP15.21■□□□□ 0.03
NEDD9-206ENST00000461055 CDCA8Q53HL2 280 aa15.21■□□□□ 0.03
NEDD9-206ENST00000461055 SCAF11Q99590 1463 aaKnown RBP15.2■□□□□ 0.02
NEDD9-206ENST00000461055 TOM1O60784 492 aa15.2■□□□□ 0.02
NEDD9-206ENST00000461055 THEMISQ8N1K5 641 aaPredicted RBP15.2■□□□□ 0.02
NEDD9-206ENST00000461055 ZFYVE9O95405 1425 aa15.19■□□□□ 0.02
NEDD9-206ENST00000461055 TMF1P82094 1093 aa15.19■□□□□ 0.02
NEDD9-206ENST00000461055 IFT172Q9UG01 1749 aa15.19■□□□□ 0.02
NEDD9-206ENST00000461055 CHGAP10645 457 aaKnown RBP15.18■□□□□ 0.02
NEDD9-206ENST00000461055 UGGT1Q9NYU2 1555 aa15.18■□□□□ 0.02
NEDD9-206ENST00000461055 SYNMO15061 1565 aa15.17■□□□□ 0.02
NEDD9-206ENST00000461055 KTN1Q86UP2 1357 aaKnown RBP15.17■□□□□ 0.02
NEDD9-206ENST00000461055 SETBP1Q9Y6X0 1596 aa15.16■□□□□ 0.02
NEDD9-206ENST00000461055 ERVK-7P63135 1459 aa15.16■□□□□ 0.02
NEDD9-206ENST00000461055 IDI1Q13907 227 aa15.16■□□□□ 0.02
NEDD9-206ENST00000461055 TESK2Q96S53 571 aa15.15■□□□□ 0.02
NEDD9-206ENST00000461055 C14orf93Q9H972 538 aaKnown RBP15.15■□□□□ 0.02
NEDD9-206ENST00000461055 NPHP4O75161 1426 aaPredicted RBP15.15■□□□□ 0.02
NEDD9-206ENST00000461055 CFAP65Q6ZU64 1925 aaKnown RBP15.15■□□□□ 0.02
NEDD9-206ENST00000461055 ADGRF5Q8IZF2 1346 aa15.15■□□□□ 0.02
NEDD9-206ENST00000461055 ALKQ9UM73 1620 aa15.14■□□□□ 0.01
NEDD9-206ENST00000461055 PPLO60437 1756 aa15.14■□□□□ 0.01
NEDD9-206ENST00000461055 IQGAP1P46940 1657 aa15.14■□□□□ 0.01
NEDD9-206ENST00000461055 PIK3C2GO75747 1445 aa15.13■□□□□ 0.01
NEDD9-206ENST00000461055 LTKP29376 864 aa15.13■□□□□ 0.01
NEDD9-206ENST00000461055 PRKRIP1Q9H875 184 aaPredicted RBP15.13■□□□□ 0.01
NEDD9-206ENST00000461055 CFAP70Q5T0N1 1121 aa15.11■□□□□ 0.01
NEDD9-206ENST00000461055 YTHDC1Q96MU7 727 aaKnown RBP15.11■□□□□ 0.01
NEDD9-206ENST00000461055 CPS1P31327 1500 aa15.11■□□□□ 0.01
NEDD9-206ENST00000461055 STRCP1A6NGW2 1772 aa15.11■□□□□ 0.01
NEDD9-206ENST00000461055 MED1Q15648 1581 aaPredicted RBP15.11■□□□□ 0.01
NEDD9-206ENST00000461055 SBNO2Q9Y2G9 1366 aa15.11■□□□□ 0.01
NEDD9-206ENST00000461055 NLRP1Q9C000 1473 aa15.1■□□□□ 0.01
NEDD9-206ENST00000461055 HDGFP51858 240 aaKnown RBP15.1■□□□□ 0.01
NEDD9-206ENST00000461055 MED14O60244 1454 aa15.09■□□□□ 0.01
NEDD9-206ENST00000461055 NEXMIFQ5QGS0 1516 aa15.09■□□□□ 0.01
NEDD9-206ENST00000461055 TMEM131LA2VDJ0 1609 aa15.09■□□□□ 0.01
NEDD9-206ENST00000461055 RALBP1Q15311 655 aa15.08■□□□□ 0
NEDD9-206ENST00000461055 TXNDC2Q86VQ3 553 aa15.08■□□□□ 0
NEDD9-206ENST00000461055 POLR3GLQ9BT43 218 aa15.08■□□□□ 0
NEDD9-206ENST00000461055 STAG3Q9UJ98 1225 aa15.08■□□□□ 0
NEDD9-206ENST00000461055 LRRC7Q96NW7 1537 aa15.07■□□□□ 0
NEDD9-206ENST00000461055 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.07■□□□□ 0
NEDD9-206ENST00000461055 RBM33Q96EV2 1170 aaKnown RBP15.07■□□□□ 0
NEDD9-206ENST00000461055 PUS7Q96PZ0 661 aaKnown RBP15.07■□□□□ 0
NEDD9-206ENST00000461055 RGS17Q9UGC6 210 aaPredicted RBP15.05■□□□□ -0
NEDD9-206ENST00000461055 KDM5AP29375 1690 aaKnown RBP15.03■□□□□ -0
NEDD9-206ENST00000461055 ADGRB1O14514 1584 aa15.03■□□□□ -0
NEDD9-206ENST00000461055 CENPJQ9HC77 1338 aaPredicted RBP15.03■□□□□ -0
NEDD9-206ENST00000461055 PER1O15534 1290 aaPredicted RBP15□□□□□ -0.01
NEDD9-206ENST00000461055 SLC26A8Q96RN1 970 aa15□□□□□ -0.01
NEDD9-206ENST00000461055 MRS2Q9HD23 443 aa14.99□□□□□ -0.01
NEDD9-206ENST00000461055 NPC1L1Q9UHC9 1359 aa14.98□□□□□ -0.01
NEDD9-206ENST00000461055 MYBBP1AQ9BQG0 1328 aaKnown RBP14.98□□□□□ -0.01
NEDD9-206ENST00000461055 UBR1Q8IWV7 1749 aa14.98□□□□□ -0.01
NEDD9-206ENST00000461055 PANK3Q9H999 370 aa14.98□□□□□ -0.01
NEDD9-206ENST00000461055 RIMS2Q9UQ26 1411 aa14.98□□□□□ -0.01
NEDD9-206ENST00000461055 BRD4O60885 1362 aaPredicted RBP14.98□□□□□ -0.01
NEDD9-206ENST00000461055 EID1Q9Y6B2 187 aa14.97□□□□□ -0.01
NEDD9-206ENST00000461055 ARHGAP23Q9P227 1491 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms