RNA–Protein interactions for RNA: ENST00000460235.1

HDAC4-206, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 343 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-206ENST00000460235 TMEM2Q9UHN6 1383 aa17.69■□□□□ 0.42
HDAC4-206ENST00000460235 ZNF142P52746 1687 aaPredicted RBP17.69■□□□□ 0.42
HDAC4-206ENST00000460235 DCAF11Q8TEB1 546 aa17.69■□□□□ 0.42
HDAC4-206ENST00000460235 TXNDC2Q86VQ3 553 aa17.67■□□□□ 0.42
HDAC4-206ENST00000460235 L3MBTL2Q969R5 705 aa17.67■□□□□ 0.42
HDAC4-206ENST00000460235 RIMS2Q9UQ26 1411 aa17.66■□□□□ 0.42
HDAC4-206ENST00000460235 UBR1Q8IWV7 1749 aa17.66■□□□□ 0.42
HDAC4-206ENST00000460235 ZFYVE9O95405 1425 aa17.65■□□□□ 0.42
HDAC4-206ENST00000460235 SLIT1O75093 1534 aa17.64■□□□□ 0.41
HDAC4-206ENST00000460235 BCANQ96GW7 911 aa17.64■□□□□ 0.41
HDAC4-206ENST00000460235 KDM2AQ9Y2K7 1162 aa17.64■□□□□ 0.41
HDAC4-206ENST00000460235 DMRT2Q9Y5R5 561 aa17.63■□□□□ 0.41
HDAC4-206ENST00000460235 ARHGAP23Q9P227 1491 aa17.63■□□□□ 0.41
HDAC4-206ENST00000460235 MYOM2P54296 1465 aa17.61■□□□□ 0.41
HDAC4-206ENST00000460235 SCAF11Q99590 1463 aaKnown RBP17.61■□□□□ 0.41
HDAC4-206ENST00000460235 LMTK3Q96Q04 1460 aa17.6■□□□□ 0.41
HDAC4-206ENST00000460235 NEXMIFQ5QGS0 1516 aa17.58■□□□□ 0.41
HDAC4-206ENST00000460235 PLEKHG1Q9ULL1 1385 aa17.58■□□□□ 0.4
HDAC4-206ENST00000460235 LTKP29376 864 aa17.56■□□□□ 0.4
HDAC4-206ENST00000460235 HSPA2P54652 639 aa17.55■□□□□ 0.4
HDAC4-206ENST00000460235 MYO5BQ9ULV0 1848 aa17.55■□□□□ 0.4
HDAC4-206ENST00000460235 PPLO60437 1756 aa17.55■□□□□ 0.4
HDAC4-206ENST00000460235 ADGRF5Q8IZF2 1346 aa17.54■□□□□ 0.4
HDAC4-206ENST00000460235 NUTM2DQ5VT03 806 aaPredicted RBP17.54■□□□□ 0.4
HDAC4-206ENST00000460235 MED14O60244 1454 aa17.53■□□□□ 0.4
HDAC4-206ENST00000460235 C14orf93Q9H972 538 aaKnown RBP17.53■□□□□ 0.4
HDAC4-206ENST00000460235 TBX22Q9Y458 520 aa17.53■□□□□ 0.4
HDAC4-206ENST00000460235 NPHP4O75161 1426 aaPredicted RBP17.53■□□□□ 0.4
HDAC4-206ENST00000460235 PRAG1Q86YV5 1406 aa17.53■□□□□ 0.4
HDAC4-206ENST00000460235 NRXN1Q9ULB1 1477 aa17.52■□□□□ 0.4
HDAC4-206ENST00000460235 IFT172Q9UG01 1749 aa17.52■□□□□ 0.39
HDAC4-206ENST00000460235 NCKAP5LQ9HCH0 1330 aa17.51■□□□□ 0.39
HDAC4-206ENST00000460235 PIK3C2GO75747 1445 aa17.51■□□□□ 0.39
HDAC4-206ENST00000460235 PIK3R4Q99570 1358 aa17.5■□□□□ 0.39
HDAC4-206ENST00000460235 DIP2AQ14689 1571 aa17.49■□□□□ 0.39
HDAC4-206ENST00000460235 LAMC1P11047 1609 aa17.49■□□□□ 0.39
HDAC4-206ENST00000460235 SETBP1Q9Y6X0 1596 aa17.49■□□□□ 0.39
HDAC4-206ENST00000460235 POLR1AO95602 1720 aaPredicted RBP17.48■□□□□ 0.39
HDAC4-206ENST00000460235 ROCK2O75116 1388 aaKnown RBP17.48■□□□□ 0.39
HDAC4-206ENST00000460235 CFAP70Q5T0N1 1121 aa17.46■□□□□ 0.39
HDAC4-206ENST00000460235 KIAA1210Q9ULL0 1709 aa17.46■□□□□ 0.39
HDAC4-206ENST00000460235 SLC24A1O60721 1099 aa17.45■□□□□ 0.38
HDAC4-206ENST00000460235 SLC26A8Q96RN1 970 aa17.45■□□□□ 0.38
HDAC4-206ENST00000460235 CARD11Q9BXL7 1154 aa17.45■□□□□ 0.38
HDAC4-206ENST00000460235 NBPF8Q3BBV2 869 aa17.44■□□□□ 0.38
HDAC4-206ENST00000460235 IQGAP1P46940 1657 aa17.44■□□□□ 0.38
HDAC4-206ENST00000460235 RALGAPBQ86X10 1494 aa17.44■□□□□ 0.38
HDAC4-206ENST00000460235 ALKQ9UM73 1620 aa17.43■□□□□ 0.38
HDAC4-206ENST00000460235 EIF3AQ14152 1382 aaKnown RBP17.43■□□□□ 0.38
HDAC4-206ENST00000460235 ADAMTS13Q76LX8 1427 aa17.42■□□□□ 0.38
HDAC4-206ENST00000460235 GPRASP1Q5JY77 1395 aa17.4■□□□□ 0.38
HDAC4-206ENST00000460235 KCNA6P17658 529 aa17.4■□□□□ 0.38
HDAC4-206ENST00000460235 SIRT1Q96EB6 747 aa17.4■□□□□ 0.38
HDAC4-206ENST00000460235 LRPPRCP42704 1394 aaKnown RBP17.4■□□□□ 0.38
HDAC4-206ENST00000460235 SENP3Q9H4L4 574 aaPredicted RBP17.39■□□□□ 0.37
HDAC4-206ENST00000460235 ABCC11Q96J66 1382 aa17.39■□□□□ 0.37
HDAC4-206ENST00000460235 EIF4G2P78344 907 aaKnown RBP eCLIP17.38■□□□□ 0.37
HDAC4-206ENST00000460235 NBPF1Q3BBV0 1214 aa17.38■□□□□ 0.37
HDAC4-206ENST00000460235 TMEM132EQ6IEE7 984 aa17.38■□□□□ 0.37
HDAC4-206ENST00000460235 TRPM1Q7Z4N2 1603 aa17.38■□□□□ 0.37
HDAC4-206ENST00000460235 YTHDC2Q9H6S0 1430 aaKnown RBP17.38■□□□□ 0.37
HDAC4-206ENST00000460235 AMOTL2Q9Y2J4 779 aa17.37■□□□□ 0.37
HDAC4-206ENST00000460235 STRCQ7RTU9 1775 aa17.37■□□□□ 0.37
HDAC4-206ENST00000460235 POGKQ9P215 609 aa17.36■□□□□ 0.37
HDAC4-206ENST00000460235 STK26Q9P289 416 aa17.36■□□□□ 0.37
HDAC4-206ENST00000460235 METP08581 1390 aa17.36■□□□□ 0.37
HDAC4-206ENST00000460235 NRXN3Q9Y4C0 1643 aa17.36■□□□□ 0.37
HDAC4-206ENST00000460235 TRAK1Q9UPV9 953 aa17.34■□□□□ 0.37
HDAC4-206ENST00000460235 ADGRB1O14514 1584 aa17.32■□□□□ 0.36
HDAC4-206ENST00000460235 TECPR2O15040 1411 aa17.32■□□□□ 0.36
HDAC4-206ENST00000460235 FAM135BQ49AJ0 1406 aa17.32■□□□□ 0.36
HDAC4-206ENST00000460235 USP47Q96K76 1375 aa17.31■□□□□ 0.36
HDAC4-206ENST00000460235 PROSER2Q86WR7 435 aaPredicted RBP17.31■□□□□ 0.36
HDAC4-206ENST00000460235 DLC1Q96QB1 1528 aa17.31■□□□□ 0.36
HDAC4-206ENST00000460235 NKTRP30414 1462 aaKnown RBP17.31■□□□□ 0.36
HDAC4-206ENST00000460235 PTCH1Q13635 1447 aa17.3■□□□□ 0.36
HDAC4-206ENST00000460235 CENPJQ9HC77 1338 aaPredicted RBP17.3■□□□□ 0.36
HDAC4-206ENST00000460235 CDCA8Q53HL2 280 aa17.29■□□□□ 0.36
HDAC4-206ENST00000460235 SETD1AO15047 1707 aaKnown RBP17.29■□□□□ 0.36
HDAC4-206ENST00000460235 NCOA3Q9Y6Q9 1424 aa17.29■□□□□ 0.36
HDAC4-206ENST00000460235 C14orf37Q86TY3 774 aa17.28■□□□□ 0.36
HDAC4-206ENST00000460235 PRAM1Q96QH2 718 aa17.28■□□□□ 0.36
HDAC4-206ENST00000460235 CPS1P31327 1500 aa17.27■□□□□ 0.36
HDAC4-206ENST00000460235 CHD2O14647 1828 aaKnown RBP17.27■□□□□ 0.36
HDAC4-206ENST00000460235 PTPRUQ92729 1446 aa17.26■□□□□ 0.35
HDAC4-206ENST00000460235 NWD1Q149M9 1564 aa17.26■□□□□ 0.35
HDAC4-206ENST00000460235 KNDC1Q76NI1 1749 aa17.26■□□□□ 0.35
HDAC4-206ENST00000460235 ASXL1Q8IXJ9 1541 aa17.26■□□□□ 0.35
HDAC4-206ENST00000460235 SBNO2Q9Y2G9 1366 aa17.25■□□□□ 0.35
HDAC4-206ENST00000460235 ZNF335Q9H4Z2 1342 aaPredicted RBP17.24■□□□□ 0.35
HDAC4-206ENST00000460235 ST20-MTHFSA0A0A6YYL1 179 aa17.24■□□□□ 0.35
HDAC4-206ENST00000460235 HSPA5P11021 654 aaKnown RBP17.24■□□□□ 0.35
HDAC4-206ENST00000460235 TMF1P82094 1093 aa17.24■□□□□ 0.35
HDAC4-206ENST00000460235 XRN1Q8IZH2 1706 aaKnown RBP17.24■□□□□ 0.35
HDAC4-206ENST00000460235 EVC2Q86UK5 1308 aa17.23■□□□□ 0.35
HDAC4-206ENST00000460235 ROBO2Q9HCK4 1378 aa17.23■□□□□ 0.35
HDAC4-206ENST00000460235 WAPLQ7Z5K2 1190 aa17.22■□□□□ 0.35
HDAC4-206ENST00000460235 C19orf44Q9H6X5 657 aa17.22■□□□□ 0.35
HDAC4-206ENST00000460235 MSH6P52701 1360 aa17.2■□□□□ 0.34
HDAC4-206ENST00000460235 SAFB2Q14151 953 aaKnown RBP eCLIP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms