RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 NUP155O75694 1391 aa34.79■■■■□ 3.16
PTPN4-207ENST00000460162 RIMS2Q9UQ26 1411 aa34.76■■■■□ 3.16
PTPN4-207ENST00000460162 NKTRP30414 1462 aaKnown RBP34.76■■■■□ 3.15
PTPN4-207ENST00000460162 PLEKHG1Q9ULL1 1385 aa34.74■■■■□ 3.15
PTPN4-207ENST00000460162 SPHKAPQ2M3C7 1700 aa34.72■■■■□ 3.15
PTPN4-207ENST00000460162 KCNA6P17658 529 aa34.71■■■■□ 3.15
PTPN4-207ENST00000460162 SLC26A8Q96RN1 970 aa34.71■■■■□ 3.15
PTPN4-207ENST00000460162 ILDR2Q71H61 639 aa34.7■■■■□ 3.15
PTPN4-207ENST00000460162 MED1Q15648 1581 aaPredicted RBP34.7■■■■□ 3.14
PTPN4-207ENST00000460162 HDGFP51858 240 aaKnown RBP34.69■■■■□ 3.14
PTPN4-207ENST00000460162 TMEM94Q12767 1356 aa34.68■■■■□ 3.14
PTPN4-207ENST00000460162 CHD2O14647 1828 aaKnown RBP34.67■■■■□ 3.14
PTPN4-207ENST00000460162 PPP1R15AO75807 674 aaPredicted RBP34.66■■■■□ 3.14
PTPN4-207ENST00000460162 DIP2AQ14689 1571 aa34.66■■■■□ 3.14
PTPN4-207ENST00000460162 BCANQ96GW7 911 aa34.64■■■■□ 3.14
PTPN4-207ENST00000460162 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.63■■■■□ 3.13
PTPN4-207ENST00000460162 CHGAP10645 457 aaKnown RBP34.62■■■■□ 3.13
PTPN4-207ENST00000460162 NAIPQ13075 1403 aa34.62■■■■□ 3.13
PTPN4-207ENST00000460162 PROSER2Q86WR7 435 aaPredicted RBP34.57■■■■□ 3.12
PTPN4-207ENST00000460162 ADAMTS13Q76LX8 1427 aa34.55■■■■□ 3.12
PTPN4-207ENST00000460162 TRPM2O94759 1503 aa34.54■■■■□ 3.12
PTPN4-207ENST00000460162 HFM1A2PYH4 1435 aa34.54■■■■□ 3.12
PTPN4-207ENST00000460162 FAM135BQ49AJ0 1406 aa34.54■■■■□ 3.12
PTPN4-207ENST00000460162 TBX22Q9Y458 520 aa34.53■■■■□ 3.12
PTPN4-207ENST00000460162 ROBO1Q9Y6N7 1651 aa34.51■■■■□ 3.12
PTPN4-207ENST00000460162 SOCS7O14512 581 aa34.51■■■■□ 3.12
PTPN4-207ENST00000460162 SENP3Q9H4L4 574 aaPredicted RBP34.51■■■■□ 3.12
PTPN4-207ENST00000460162 CLTCL1P53675 1640 aa34.51■■■■□ 3.11
PTPN4-207ENST00000460162 PIK3R4Q99570 1358 aa34.5■■■■□ 3.11
PTPN4-207ENST00000460162 MSH6P52701 1360 aa34.49■■■■□ 3.11
PTPN4-207ENST00000460162 SETBP1Q9Y6X0 1596 aa34.47■■■■□ 3.11
PTPN4-207ENST00000460162 NRXN3Q9Y4C0 1643 aa34.46■■■■□ 3.11
PTPN4-207ENST00000460162 NUTM2DQ5VT03 806 aaPredicted RBP34.46■■■■□ 3.11
PTPN4-207ENST00000460162 RBM33Q96EV2 1170 aaKnown RBP34.46■■■■□ 3.11
PTPN4-207ENST00000460162 NCOA3Q9Y6Q9 1424 aa34.46■■■■□ 3.11
PTPN4-207ENST00000460162 KIF1BO60333 1816 aa34.44■■■■□ 3.1
PTPN4-207ENST00000460162 NEXMIFQ5QGS0 1516 aa34.4■■■■□ 3.1
PTPN4-207ENST00000460162 XRN1Q8IZH2 1706 aaKnown RBP34.38■■■■□ 3.09
PTPN4-207ENST00000460162 ZNF326Q5BKZ1 582 aaKnown RBP34.34■■■■□ 3.09
PTPN4-207ENST00000460162 PHF23Q9BUL5 403 aaPredicted RBP34.34■■■■□ 3.09
PTPN4-207ENST00000460162 SIPA1L2Q9P2F8 1722 aaPredicted RBP34.34■■■■□ 3.09
PTPN4-207ENST00000460162 PTPRUQ92729 1446 aa34.33■■■■□ 3.09
PTPN4-207ENST00000460162 PHLPP1O60346 1717 aa34.31■■■■□ 3.08
PTPN4-207ENST00000460162 TRIM52Q96A61 297 aa34.3■■■■□ 3.08
PTPN4-207ENST00000460162 SLAIN2Q9P270 581 aa34.3■■■■□ 3.08
PTPN4-207ENST00000460162 C14orf37Q86TY3 774 aa34.27■■■■□ 3.08
PTPN4-207ENST00000460162 AMOTL2Q9Y2J4 779 aa34.27■■■■□ 3.08
PTPN4-207ENST00000460162 SLC4A1APQ9BWU0 796 aaKnown RBP34.25■■■■□ 3.07
PTPN4-207ENST00000460162 DCCP43146 1447 aa34.24■■■■□ 3.07
PTPN4-207ENST00000460162 C19orf44Q9H6X5 657 aa34.23■■■■□ 3.07
PTPN4-207ENST00000460162 COL16A1Q07092 1604 aaPredicted RBP34.22■■■■□ 3.07
PTPN4-207ENST00000460162 CADPS2Q86UW7 1296 aa34.22■■■■□ 3.07
PTPN4-207ENST00000460162 METP08581 1390 aa34.21■■■■□ 3.07
PTPN4-207ENST00000460162 SETD1AO15047 1707 aaKnown RBP34.2■■■■□ 3.07
PTPN4-207ENST00000460162 PPLO60437 1756 aa34.2■■■■□ 3.07
PTPN4-207ENST00000460162 AHDC1Q5TGY3 1603 aaPredicted RBP34.19■■■■□ 3.06
PTPN4-207ENST00000460162 ATF3P18847 181 aa34.17■■■■□ 3.06
PTPN4-207ENST00000460162 NALCNQ8IZF0 1738 aa34.13■■■■□ 3.05
PTPN4-207ENST00000460162 JCADQ9P266 1359 aa34.12■■■■□ 3.05
PTPN4-207ENST00000460162 RPGRIP1LQ68CZ1 1315 aa34.12■■■■□ 3.05
PTPN4-207ENST00000460162 VGFO15240 615 aaPredicted RBP34.11■■■■□ 3.05
PTPN4-207ENST00000460162 ADGRL3Q9HAR2 1447 aa34.11■■■■□ 3.05
PTPN4-207ENST00000460162 PTCH1Q13635 1447 aa34.09■■■■□ 3.05
PTPN4-207ENST00000460162 CCDC144AA2RUR9 1427 aa34.08■■■■□ 3.05
PTPN4-207ENST00000460162 PRAG1Q86YV5 1406 aa34.08■■■■□ 3.05
PTPN4-207ENST00000460162 SHPRHQ149N8 1683 aa34.07■■■■□ 3.04
PTPN4-207ENST00000460162 ASXL1Q8IXJ9 1541 aa34.06■■■■□ 3.04
PTPN4-207ENST00000460162 MST1RQ04912 1400 aa34.05■■■■□ 3.04
PTPN4-207ENST00000460162 RGS17Q9UGC6 210 aaPredicted RBP34.05■■■■□ 3.04
PTPN4-207ENST00000460162 IFT172Q9UG01 1749 aa34.04■■■■□ 3.04
PTPN4-207ENST00000460162 NHSL1Q5SYE7 1610 aa34.03■■■■□ 3.04
PTPN4-207ENST00000460162 FOXD1Q16676 465 aa34.02■■■■□ 3.04
PTPN4-207ENST00000460162 ACIN1Q9UKV3 1341 aaKnown RBP34.02■■■■□ 3.04
PTPN4-207ENST00000460162 BRINP3Q76B58 766 aa34.01■■■■□ 3.03
PTPN4-207ENST00000460162 MPHOSPH9Q99550 1183 aa34■■■■□ 3.03
PTPN4-207ENST00000460162 SPATA31E1Q6ZUB1 1445 aa33.99■■■■□ 3.03
PTPN4-207ENST00000460162 SPATA31A6Q5VVP1 1343 aa33.97■■■■□ 3.03
PTPN4-207ENST00000460162 SETD5Q9C0A6 1442 aa33.96■■■■□ 3.03
PTPN4-207ENST00000460162 ROBO2Q9HCK4 1378 aa33.94■■■■□ 3.02
PTPN4-207ENST00000460162 LRP6O75581 1613 aa33.93■■■■□ 3.02
PTPN4-207ENST00000460162 ANKRD30BQ9BXX2 1392 aa33.92■■■■□ 3.02
PTPN4-207ENST00000460162 LAMC1P11047 1609 aa33.88■■■■□ 3.01
PTPN4-207ENST00000460162 KNDC1Q76NI1 1749 aa33.86■■■■□ 3.01
PTPN4-207ENST00000460162 C1orf167Q5SNV9 1468 aa33.86■■■■□ 3.01
PTPN4-207ENST00000460162 ADGRF5Q8IZF2 1346 aa33.85■■■■□ 3.01
PTPN4-207ENST00000460162 POTEAQ6S8J7 498 aa33.85■■■■□ 3.01
PTPN4-207ENST00000460162 PIK3C2GO75747 1445 aa33.85■■■■□ 3.01
PTPN4-207ENST00000460162 CDC42BPGQ6DT37 1551 aa33.85■■■■□ 3.01
PTPN4-207ENST00000460162 TECPR2O15040 1411 aa33.83■■■■□ 3.01
PTPN4-207ENST00000460162 RGL3Q3MIN7 710 aa33.83■■■■□ 3.01
PTPN4-207ENST00000460162 RAB3GAP2Q9H2M9 1393 aa33.82■■■■□ 3
PTPN4-207ENST00000460162 MEX3CQ5U5Q3 659 aaKnown RBP33.78■■■■□ 3
PTPN4-207ENST00000460162 MYOM2P54296 1465 aa33.76■■■■□ 3
PTPN4-207ENST00000460162 LRPPRCP42704 1394 aaKnown RBP33.76■■■■□ 3
PTPN4-207ENST00000460162 LRRC59Q96AG4 307 aaKnown RBP33.75■■■□□ 2.99
PTPN4-207ENST00000460162 NRXN1Q9ULB1 1477 aa33.74■■■□□ 2.99
PTPN4-207ENST00000460162 PNPLA6Q8IY17 1366 aa33.72■■■□□ 2.99
PTPN4-207ENST00000460162 ABCC11Q96J66 1382 aa33.71■■■□□ 2.99
PTPN4-207ENST00000460162 ZNF772Q68DY9 489 aaPredicted RBP33.7■■■□□ 2.99
PTPN4-207ENST00000460162 DDX17Q92841 729 aaKnown RBP33.7■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms