RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 RBM33Q96EV2 1170 aaKnown RBP28.03■■■□□ 2.08
HOXD3-204ENST00000459979 GCC2Q8IWJ2 1684 aa28.03■■■□□ 2.08
HOXD3-204ENST00000459979 IQGAP3Q86VI3 1631 aa28.03■■■□□ 2.08
HOXD3-204ENST00000459979 NAIPQ13075 1403 aa28.01■■■□□ 2.08
HOXD3-204ENST00000459979 KCNA6P17658 529 aa28■■■□□ 2.07
HOXD3-204ENST00000459979 NUP155O75694 1391 aa27.99■■■□□ 2.07
HOXD3-204ENST00000459979 SLC52A1Q9NWF4 448 aa27.98■■■□□ 2.07
HOXD3-204ENST00000459979 NWD1Q149M9 1564 aa27.98■■■□□ 2.07
HOXD3-204ENST00000459979 PROSER2Q86WR7 435 aaPredicted RBP27.97■■■□□ 2.07
HOXD3-204ENST00000459979 BCANQ96GW7 911 aa27.97■■■□□ 2.07
HOXD3-204ENST00000459979 HFM1A2PYH4 1435 aa27.97■■■□□ 2.07
HOXD3-204ENST00000459979 ROBO1Q9Y6N7 1651 aa27.96■■■□□ 2.07
HOXD3-204ENST00000459979 TMEM131LA2VDJ0 1609 aa27.94■■■□□ 2.06
HOXD3-204ENST00000459979 ZFYVE9O95405 1425 aa27.93■■■□□ 2.06
HOXD3-204ENST00000459979 FAM135BQ49AJ0 1406 aa27.93■■■□□ 2.06
HOXD3-204ENST00000459979 E9PCH4 1651 aa27.93■■■□□ 2.06
HOXD3-204ENST00000459979 NKTRP30414 1462 aaKnown RBP27.92■■■□□ 2.06
HOXD3-204ENST00000459979 CHD2O14647 1828 aaKnown RBP27.92■■■□□ 2.06
HOXD3-204ENST00000459979 RIMS2Q9UQ26 1411 aa27.91■■■□□ 2.06
HOXD3-204ENST00000459979 PLEKHG1Q9ULL1 1385 aa27.87■■■□□ 2.05
HOXD3-204ENST00000459979 PPP1R15AO75807 674 aaPredicted RBP27.87■■■□□ 2.05
HOXD3-204ENST00000459979 RGS17Q9UGC6 210 aaPredicted RBP27.87■■■□□ 2.05
HOXD3-204ENST00000459979 CHGAP10645 457 aaKnown RBP27.86■■■□□ 2.05
HOXD3-204ENST00000459979 NUTM2DQ5VT03 806 aaPredicted RBP27.84■■■□□ 2.05
HOXD3-204ENST00000459979 MSH6P52701 1360 aa27.83■■■□□ 2.05
HOXD3-204ENST00000459979 PHLPP1O60346 1717 aa27.81■■■□□ 2.04
HOXD3-204ENST00000459979 HDGFP51858 240 aaKnown RBP27.77■■■□□ 2.04
HOXD3-204ENST00000459979 ADAMTS13Q76LX8 1427 aa27.75■■■□□ 2.03
HOXD3-204ENST00000459979 SLAIN2Q9P270 581 aa27.75■■■□□ 2.03
HOXD3-204ENST00000459979 TBX22Q9Y458 520 aa27.74■■■□□ 2.03
HOXD3-204ENST00000459979 SPHKAPQ2M3C7 1700 aa27.74■■■□□ 2.03
HOXD3-204ENST00000459979 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.73■■■□□ 2.03
HOXD3-204ENST00000459979 TRIM52Q96A61 297 aa27.72■■■□□ 2.03
HOXD3-204ENST00000459979 DIP2AQ14689 1571 aa27.72■■■□□ 2.03
HOXD3-204ENST00000459979 ACIN1Q9UKV3 1341 aaKnown RBP27.71■■■□□ 2.03
HOXD3-204ENST00000459979 POTEAQ6S8J7 498 aa27.71■■■□□ 2.03
HOXD3-204ENST00000459979 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.71■■■□□ 2.03
HOXD3-204ENST00000459979 C14orf37Q86TY3 774 aa27.69■■■□□ 2.02
HOXD3-204ENST00000459979 COL16A1Q07092 1604 aaPredicted RBP27.68■■■□□ 2.02
HOXD3-204ENST00000459979 SLC4A1APQ9BWU0 796 aaKnown RBP27.66■■■□□ 2.02
HOXD3-204ENST00000459979 TRPM2O94759 1503 aa27.66■■■□□ 2.02
HOXD3-204ENST00000459979 SETD5Q9C0A6 1442 aa27.65■■■□□ 2.02
HOXD3-204ENST00000459979 NRXN3Q9Y4C0 1643 aa27.64■■■□□ 2.02
HOXD3-204ENST00000459979 PTPRUQ92729 1446 aa27.64■■■□□ 2.02
HOXD3-204ENST00000459979 NCOA3Q9Y6Q9 1424 aa27.64■■■□□ 2.02
HOXD3-204ENST00000459979 JCADQ9P266 1359 aa27.63■■■□□ 2.01
HOXD3-204ENST00000459979 PIK3R4Q99570 1358 aa27.62■■■□□ 2.01
HOXD3-204ENST00000459979 SETD1AO15047 1707 aaKnown RBP27.61■■■□□ 2.01
HOXD3-204ENST00000459979 AMOTL2Q9Y2J4 779 aa27.6■■■□□ 2.01
HOXD3-204ENST00000459979 CLTCL1P53675 1640 aa27.59■■■□□ 2.01
HOXD3-204ENST00000459979 C19orf44Q9H6X5 657 aa27.58■■■□□ 2.01
HOXD3-204ENST00000459979 XRN1Q8IZH2 1706 aaKnown RBP27.58■■■□□ 2.01
HOXD3-204ENST00000459979 LRP6O75581 1613 aa27.57■■■□□ 2
HOXD3-204ENST00000459979 AHDC1Q5TGY3 1603 aaPredicted RBP27.57■■■□□ 2
HOXD3-204ENST00000459979 ATF3P18847 181 aa27.57■■■□□ 2
HOXD3-204ENST00000459979 CADPS2Q86UW7 1296 aa27.57■■■□□ 2
HOXD3-204ENST00000459979 MPHOSPH9Q99550 1183 aa27.56■■■□□ 2
HOXD3-204ENST00000459979 SETBP1Q9Y6X0 1596 aa27.56■■■□□ 2
HOXD3-204ENST00000459979 KIF1BO60333 1816 aa27.54■■■□□ 2
HOXD3-204ENST00000459979 ZNF326Q5BKZ1 582 aaKnown RBP27.54■■■□□ 2
HOXD3-204ENST00000459979 SHPRHQ149N8 1683 aa27.53■■■□□ 2
HOXD3-204ENST00000459979 RAB3GAP2Q9H2M9 1393 aa27.53■■■□□ 2
HOXD3-204ENST00000459979 HRCP23327 699 aa27.51■■□□□ 1.99
HOXD3-204ENST00000459979 METP08581 1390 aa27.49■■□□□ 1.99
HOXD3-204ENST00000459979 BRINP3Q76B58 766 aa27.49■■□□□ 1.99
HOXD3-204ENST00000459979 NEXMIFQ5QGS0 1516 aa27.49■■□□□ 1.99
HOXD3-204ENST00000459979 SPATA31A6Q5VVP1 1343 aa27.47■■□□□ 1.99
HOXD3-204ENST00000459979 FOXD1Q16676 465 aa27.47■■□□□ 1.99
HOXD3-204ENST00000459979 MEX3CQ5U5Q3 659 aaKnown RBP27.47■■□□□ 1.99
HOXD3-204ENST00000459979 ASXL1Q8IXJ9 1541 aa27.46■■□□□ 1.99
HOXD3-204ENST00000459979 DCCP43146 1447 aa27.45■■□□□ 1.98
HOXD3-204ENST00000459979 NALCNQ8IZF0 1738 aa27.44■■□□□ 1.98
HOXD3-204ENST00000459979 MST1RQ04912 1400 aa27.43■■□□□ 1.98
HOXD3-204ENST00000459979 RPGRIP1LQ68CZ1 1315 aa27.42■■□□□ 1.98
HOXD3-204ENST00000459979 NHSL1Q5SYE7 1610 aa27.42■■□□□ 1.98
HOXD3-204ENST00000459979 CCDC144AA2RUR9 1427 aa27.41■■□□□ 1.98
HOXD3-204ENST00000459979 NUTM2BA6NNL0 878 aaPredicted RBP27.4■■□□□ 1.98
HOXD3-204ENST00000459979 NUTM2EB1AL46 878 aaPredicted RBP27.4■■□□□ 1.98
HOXD3-204ENST00000459979 NUTM2AQ8IVF1 878 aaPredicted RBP27.4■■□□□ 1.98
HOXD3-204ENST00000459979 ADGRL3Q9HAR2 1447 aa27.38■■□□□ 1.97
HOXD3-204ENST00000459979 VGFO15240 615 aaPredicted RBP27.36■■□□□ 1.97
HOXD3-204ENST00000459979 DDX17Q92841 729 aaKnown RBP27.36■■□□□ 1.97
HOXD3-204ENST00000459979 SPATA31E1Q6ZUB1 1445 aa27.35■■□□□ 1.97
HOXD3-204ENST00000459979 ZNF772Q68DY9 489 aaPredicted RBP27.35■■□□□ 1.97
HOXD3-204ENST00000459979 PPLO60437 1756 aa27.33■■□□□ 1.97
HOXD3-204ENST00000459979 ANKRD30BQ9BXX2 1392 aa27.27■■□□□ 1.96
HOXD3-204ENST00000459979 AFF2P51816 1311 aa27.27■■□□□ 1.96
HOXD3-204ENST00000459979 C1orf167Q5SNV9 1468 aa27.26■■□□□ 1.95
HOXD3-204ENST00000459979 ROBO2Q9HCK4 1378 aa27.26■■□□□ 1.95
HOXD3-204ENST00000459979 LRRC59Q96AG4 307 aaKnown RBP27.26■■□□□ 1.95
HOXD3-204ENST00000459979 PTCH1Q13635 1447 aa27.25■■□□□ 1.95
HOXD3-204ENST00000459979 PNPLA6Q8IY17 1366 aa27.25■■□□□ 1.95
HOXD3-204ENST00000459979 IFT172Q9UG01 1749 aa27.24■■□□□ 1.95
HOXD3-204ENST00000459979 RXRBP28702 533 aa27.24■■□□□ 1.95
HOXD3-204ENST00000459979 RGL3Q3MIN7 710 aa27.23■■□□□ 1.95
HOXD3-204ENST00000459979 UPF1Q92900 1129 aaKnown RBP eCLIP27.21■■□□□ 1.95
HOXD3-204ENST00000459979 C8orf37Q96NL8 207 aa27.21■■□□□ 1.95
HOXD3-204ENST00000459979 LAMC1P11047 1609 aa27.2■■□□□ 1.95
HOXD3-204ENST00000459979 ORAI2Q96SN7 254 aa27.19■■□□□ 1.94
HOXD3-204ENST00000459979 ADGRF5Q8IZF2 1346 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms