RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 SLAIN2Q9P270 581 aa19.04■□□□□ 0.64
GPNMB-204ENST00000459927 TBX22Q9Y458 520 aa19.04■□□□□ 0.64
GPNMB-204ENST00000459927 CHGAP10645 457 aaKnown RBP19.01■□□□□ 0.63
GPNMB-204ENST00000459927 RPRD2Q5VT52 1461 aaKnown RBP19.01■□□□□ 0.63
GPNMB-204ENST00000459927 PPP1R15AO75807 674 aaPredicted RBP19■□□□□ 0.63
GPNMB-204ENST00000459927 ABCF1Q8NE71 845 aaKnown RBP eCLIP19■□□□□ 0.63
GPNMB-204ENST00000459927 PLEKHG1Q9ULL1 1385 aa18.98■□□□□ 0.63
GPNMB-204ENST00000459927 ADGRB3O60242 1522 aa18.98■□□□□ 0.63
GPNMB-204ENST00000459927 ZFYVE9O95405 1425 aa18.98■□□□□ 0.63
GPNMB-204ENST00000459927 RIMS2Q9UQ26 1411 aa18.98■□□□□ 0.63
GPNMB-204ENST00000459927 MSH6P52701 1360 aa18.97■□□□□ 0.63
GPNMB-204ENST00000459927 NUTM2DQ5VT03 806 aaPredicted RBP18.97■□□□□ 0.63
GPNMB-204ENST00000459927 POTEAQ6S8J7 498 aa18.96■□□□□ 0.63
GPNMB-204ENST00000459927 ROCK1Q13464 1354 aa18.93■□□□□ 0.62
GPNMB-204ENST00000459927 CHD2O14647 1828 aaKnown RBP18.93■□□□□ 0.62
GPNMB-204ENST00000459927 NKTRP30414 1462 aaKnown RBP18.93■□□□□ 0.62
GPNMB-204ENST00000459927 MYO5BQ9ULV0 1848 aa18.93■□□□□ 0.62
GPNMB-204ENST00000459927 TMEM131LA2VDJ0 1609 aa18.92■□□□□ 0.62
GPNMB-204ENST00000459927 ITGAEP38570 1179 aa18.92■□□□□ 0.62
GPNMB-204ENST00000459927 C19orf44Q9H6X5 657 aa18.92■□□□□ 0.62
GPNMB-204ENST00000459927 NUP155O75694 1391 aa18.92■□□□□ 0.62
GPNMB-204ENST00000459927 ROBO1Q9Y6N7 1651 aa18.92■□□□□ 0.62
GPNMB-204ENST00000459927 NCOA3Q9Y6Q9 1424 aa18.91■□□□□ 0.62
GPNMB-204ENST00000459927 NWD1Q149M9 1564 aa18.9■□□□□ 0.62
GPNMB-204ENST00000459927 C14orf37Q86TY3 774 aa18.89■□□□□ 0.61
GPNMB-204ENST00000459927 PPARGC1BQ86YN6 1023 aaKnown RBP18.89■□□□□ 0.61
GPNMB-204ENST00000459927 AMOTL2Q9Y2J4 779 aa18.89■□□□□ 0.61
GPNMB-204ENST00000459927 CADPS2Q86UW7 1296 aa18.88■□□□□ 0.61
GPNMB-204ENST00000459927 ADAMTS13Q76LX8 1427 aa18.88■□□□□ 0.61
GPNMB-204ENST00000459927 ATF3P18847 181 aa18.87■□□□□ 0.61
GPNMB-204ENST00000459927 GCC2Q8IWJ2 1684 aa18.87■□□□□ 0.61
GPNMB-204ENST00000459927 PIK3R4Q99570 1358 aa18.86■□□□□ 0.61
GPNMB-204ENST00000459927 JCADQ9P266 1359 aa18.86■□□□□ 0.61
GPNMB-204ENST00000459927 E9PCH4 1651 aa18.85■□□□□ 0.61
GPNMB-204ENST00000459927 UNC13BO14795 1591 aa18.85■□□□□ 0.61
GPNMB-204ENST00000459927 PHLPP1O60346 1717 aa18.81■□□□□ 0.6
GPNMB-204ENST00000459927 ZNF326Q5BKZ1 582 aaKnown RBP18.8■□□□□ 0.6
GPNMB-204ENST00000459927 IQGAP3Q86VI3 1631 aa18.8■□□□□ 0.6
GPNMB-204ENST00000459927 PTPRUQ92729 1446 aa18.8■□□□□ 0.6
GPNMB-204ENST00000459927 SPATA31A6Q5VVP1 1343 aa18.79■□□□□ 0.6
GPNMB-204ENST00000459927 BRINP3Q76B58 766 aa18.78■□□□□ 0.6
GPNMB-204ENST00000459927 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.77■□□□□ 0.59
GPNMB-204ENST00000459927 MEX3CQ5U5Q3 659 aaKnown RBP18.75■□□□□ 0.59
GPNMB-204ENST00000459927 ZNF772Q68DY9 489 aaPredicted RBP18.75■□□□□ 0.59
GPNMB-204ENST00000459927 DIP2AQ14689 1571 aa18.75■□□□□ 0.59
GPNMB-204ENST00000459927 COL16A1Q07092 1604 aaPredicted RBP18.74■□□□□ 0.59
GPNMB-204ENST00000459927 TRPM2O94759 1503 aa18.74■□□□□ 0.59
GPNMB-204ENST00000459927 METP08581 1390 aa18.73■□□□□ 0.59
GPNMB-204ENST00000459927 NUTM2BA6NNL0 878 aaPredicted RBP18.71■□□□□ 0.59
GPNMB-204ENST00000459927 NUTM2EB1AL46 878 aaPredicted RBP18.71■□□□□ 0.59
GPNMB-204ENST00000459927 NUTM2AQ8IVF1 878 aaPredicted RBP18.71■□□□□ 0.59
GPNMB-204ENST00000459927 LRRC59Q96AG4 307 aaKnown RBP18.7■□□□□ 0.58
GPNMB-204ENST00000459927 LRP6O75581 1613 aa18.69■□□□□ 0.58
GPNMB-204ENST00000459927 AHDC1Q5TGY3 1603 aaPredicted RBP18.69■□□□□ 0.58
GPNMB-204ENST00000459927 VGFO15240 615 aaPredicted RBP18.68■□□□□ 0.58
GPNMB-204ENST00000459927 RXRBP28702 533 aa18.68■□□□□ 0.58
GPNMB-204ENST00000459927 TRIM52Q96A61 297 aa18.67■□□□□ 0.58
GPNMB-204ENST00000459927 SETBP1Q9Y6X0 1596 aa18.67■□□□□ 0.58
GPNMB-204ENST00000459927 NRXN3Q9Y4C0 1643 aa18.67■□□□□ 0.58
GPNMB-204ENST00000459927 DCCP43146 1447 aa18.66■□□□□ 0.58
GPNMB-204ENST00000459927 DDX17Q92841 729 aaKnown RBP18.66■□□□□ 0.58
GPNMB-204ENST00000459927 SPHKAPQ2M3C7 1700 aa18.66■□□□□ 0.58
GPNMB-204ENST00000459927 UPF1Q92900 1129 aaKnown RBP eCLIP18.65■□□□□ 0.58
GPNMB-204ENST00000459927 MST1RQ04912 1400 aa18.65■□□□□ 0.58
GPNMB-204ENST00000459927 NAIPQ13075 1403 aa18.64■□□□□ 0.57
GPNMB-204ENST00000459927 SETD5Q9C0A6 1442 aa18.64■□□□□ 0.57
GPNMB-204ENST00000459927 RPGRIP1LQ68CZ1 1315 aa18.63■□□□□ 0.57
GPNMB-204ENST00000459927 RRBP1Q9P2E9 1410 aaKnown RBP18.62■□□□□ 0.57
GPNMB-204ENST00000459927 SHPRHQ149N8 1683 aa18.62■□□□□ 0.57
GPNMB-204ENST00000459927 XRN1Q8IZH2 1706 aaKnown RBP18.62■□□□□ 0.57
GPNMB-204ENST00000459927 AFF2P51816 1311 aa18.61■□□□□ 0.57
GPNMB-204ENST00000459927 SLC4A1APQ9BWU0 796 aaKnown RBP18.61■□□□□ 0.57
GPNMB-204ENST00000459927 QTRT2Q9H974 415 aaKnown RBP18.61■□□□□ 0.57
GPNMB-204ENST00000459927 CLTCL1P53675 1640 aa18.6■□□□□ 0.57
GPNMB-204ENST00000459927 NEXMIFQ5QGS0 1516 aa18.59■□□□□ 0.57
GPNMB-204ENST00000459927 ASXL1Q8IXJ9 1541 aa18.59■□□□□ 0.57
GPNMB-204ENST00000459927 ORAI2Q96SN7 254 aa18.59■□□□□ 0.57
GPNMB-204ENST00000459927 ADGRL3Q9HAR2 1447 aa18.58■□□□□ 0.57
GPNMB-204ENST00000459927 C8orf37Q96NL8 207 aa18.57■□□□□ 0.56
GPNMB-204ENST00000459927 KIF1BO60333 1816 aa18.57■□□□□ 0.56
GPNMB-204ENST00000459927 SETD1AO15047 1707 aaKnown RBP18.57■□□□□ 0.56
GPNMB-204ENST00000459927 ROBO2Q9HCK4 1378 aa18.56■□□□□ 0.56
GPNMB-204ENST00000459927 NGLY1Q96IV0 654 aa18.56■□□□□ 0.56
GPNMB-204ENST00000459927 C1orf167Q5SNV9 1468 aa18.55■□□□□ 0.56
GPNMB-204ENST00000459927 RBM6P78332 1123 aaKnown RBP18.55■□□□□ 0.56
GPNMB-204ENST00000459927 PNPLA6Q8IY17 1366 aa18.55■□□□□ 0.56
GPNMB-204ENST00000459927 SOS2Q07890 1332 aaPredicted RBP18.54■□□□□ 0.56
GPNMB-204ENST00000459927 NHSL1Q5SYE7 1610 aa18.53■□□□□ 0.56
GPNMB-204ENST00000459927 ADAMTS2O95450 1211 aa18.53■□□□□ 0.56
GPNMB-204ENST00000459927 FOXD1Q16676 465 aa18.53■□□□□ 0.56
GPNMB-204ENST00000459927 HFM1A2PYH4 1435 aa18.51■□□□□ 0.55
GPNMB-204ENST00000459927 CDK12Q9NYV4 1490 aaPredicted RBP18.51■□□□□ 0.55
GPNMB-204ENST00000459927 RGL3Q3MIN7 710 aa18.5■□□□□ 0.55
GPNMB-204ENST00000459927 PTCH1Q13635 1447 aa18.49■□□□□ 0.55
GPNMB-204ENST00000459927 ESCO1Q5FWF5 840 aa18.49■□□□□ 0.55
GPNMB-204ENST00000459927 NALCNQ8IZF0 1738 aa18.49■□□□□ 0.55
GPNMB-204ENST00000459927 ADGRF5Q8IZF2 1346 aa18.49■□□□□ 0.55
GPNMB-204ENST00000459927 WAPLQ7Z5K2 1190 aa18.48■□□□□ 0.55
GPNMB-204ENST00000459927 MPHOSPH9Q99550 1183 aa18.48■□□□□ 0.55
GPNMB-204ENST00000459927 FNBP4Q8N3X1 1017 aaPredicted RBP18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms