RNA–Protein interactions for RNA: ENST00000458516.5

TRIM39-211, Transcript of tripartite motif containing 39, humanhuman

TSL 2

Gene TRIM39, Length 1,003 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-211ENST00000458516 RGL3Q3MIN7 710 aa24.45■■□□□ 1.5
TRIM39-211ENST00000458516 HSPA2P54652 639 aa24.44■■□□□ 1.5
TRIM39-211ENST00000458516 ZNF326Q5BKZ1 582 aaKnown RBP24.44■■□□□ 1.5
TRIM39-211ENST00000458516 STRCQ7RTU9 1775 aa24.42■■□□□ 1.5
TRIM39-211ENST00000458516 RPGRIP1LQ68CZ1 1315 aa24.41■■□□□ 1.5
TRIM39-211ENST00000458516 MYOM2P54296 1465 aa24.39■■□□□ 1.5
TRIM39-211ENST00000458516 SCAF11Q99590 1463 aaKnown RBP24.39■■□□□ 1.5
TRIM39-211ENST00000458516 TONSLQ96HA7 1378 aa24.38■■□□□ 1.49
TRIM39-211ENST00000458516 LTKP29376 864 aa24.37■■□□□ 1.49
TRIM39-211ENST00000458516 NUTM2DQ5VT03 806 aaPredicted RBP24.36■■□□□ 1.49
TRIM39-211ENST00000458516 L3MBTL2Q969R5 705 aa24.36■■□□□ 1.49
TRIM39-211ENST00000458516 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.35■■□□□ 1.49
TRIM39-211ENST00000458516 NRXN3Q9Y4C0 1643 aa24.35■■□□□ 1.49
TRIM39-211ENST00000458516 IQGAP1P46940 1657 aa24.34■■□□□ 1.49
TRIM39-211ENST00000458516 NRXN1Q9ULB1 1477 aa24.34■■□□□ 1.49
TRIM39-211ENST00000458516 TXNDC2Q86VQ3 553 aa24.34■■□□□ 1.49
TRIM39-211ENST00000458516 ANKLE2Q86XL3 938 aa24.34■■□□□ 1.49
TRIM39-211ENST00000458516 MED14O60244 1454 aa24.33■■□□□ 1.49
TRIM39-211ENST00000458516 DCAF11Q8TEB1 546 aa24.33■■□□□ 1.49
TRIM39-211ENST00000458516 EID1Q9Y6B2 187 aa24.33■■□□□ 1.49
TRIM39-211ENST00000458516 HDGFP51858 240 aaKnown RBP24.32■■□□□ 1.48
TRIM39-211ENST00000458516 NCKAP5LQ9HCH0 1330 aa24.32■■□□□ 1.48
TRIM39-211ENST00000458516 PLEKHG1Q9ULL1 1385 aa24.31■■□□□ 1.48
TRIM39-211ENST00000458516 SETBP1Q9Y6X0 1596 aa24.31■■□□□ 1.48
TRIM39-211ENST00000458516 ADGRF5Q8IZF2 1346 aa24.31■■□□□ 1.48
TRIM39-211ENST00000458516 VGFO15240 615 aaPredicted RBP24.3■■□□□ 1.48
TRIM39-211ENST00000458516 PPP1R15AO75807 674 aaPredicted RBP24.3■■□□□ 1.48
TRIM39-211ENST00000458516 SETD1AO15047 1707 aaKnown RBP24.3■■□□□ 1.48
TRIM39-211ENST00000458516 TIMELESSQ9UNS1 1208 aa24.29■■□□□ 1.48
TRIM39-211ENST00000458516 KDM2AQ9Y2K7 1162 aa24.29■■□□□ 1.48
TRIM39-211ENST00000458516 NPHP4O75161 1426 aaPredicted RBP24.28■■□□□ 1.48
TRIM39-211ENST00000458516 PIK3C2GO75747 1445 aa24.28■■□□□ 1.48
TRIM39-211ENST00000458516 STAC3Q96MF2 364 aa24.28■■□□□ 1.48
TRIM39-211ENST00000458516 PRAG1Q86YV5 1406 aa24.27■■□□□ 1.48
TRIM39-211ENST00000458516 LAMC1P11047 1609 aa24.25■■□□□ 1.47
TRIM39-211ENST00000458516 ADAMTS13Q76LX8 1427 aa24.25■■□□□ 1.47
TRIM39-211ENST00000458516 DIP2AQ14689 1571 aa24.25■■□□□ 1.47
TRIM39-211ENST00000458516 KIAA1210Q9ULL0 1709 aa24.24■■□□□ 1.47
TRIM39-211ENST00000458516 ALKQ9UM73 1620 aa24.24■■□□□ 1.47
TRIM39-211ENST00000458516 TRPM1Q7Z4N2 1603 aa24.22■■□□□ 1.47
TRIM39-211ENST00000458516 SENP3Q9H4L4 574 aaPredicted RBP24.22■■□□□ 1.47
TRIM39-211ENST00000458516 ASXL1Q8IXJ9 1541 aa24.19■■□□□ 1.46
TRIM39-211ENST00000458516 NBPF8Q3BBV2 869 aa24.18■■□□□ 1.46
TRIM39-211ENST00000458516 ILDR1Q86SU0 546 aaPredicted RBP24.18■■□□□ 1.46
TRIM39-211ENST00000458516 BCANQ96GW7 911 aa24.17■■□□□ 1.46
TRIM39-211ENST00000458516 SLC26A8Q96RN1 970 aa24.16■■□□□ 1.46
TRIM39-211ENST00000458516 C14orf93Q9H972 538 aaKnown RBP24.15■■□□□ 1.46
TRIM39-211ENST00000458516 CHD2O14647 1828 aaKnown RBP24.14■■□□□ 1.46
TRIM39-211ENST00000458516 ADGRB1O14514 1584 aa24.14■■□□□ 1.45
TRIM39-211ENST00000458516 CFAP70Q5T0N1 1121 aa24.14■■□□□ 1.45
TRIM39-211ENST00000458516 RALGAPBQ86X10 1494 aa24.13■■□□□ 1.45
TRIM39-211ENST00000458516 TBX22Q9Y458 520 aa24.13■■□□□ 1.45
TRIM39-211ENST00000458516 DMRT2Q9Y5R5 561 aa24.11■■□□□ 1.45
TRIM39-211ENST00000458516 METP08581 1390 aa24.11■■□□□ 1.45
TRIM39-211ENST00000458516 NWD1Q149M9 1564 aa24.1■■□□□ 1.45
TRIM39-211ENST00000458516 STRCP1A6NGW2 1772 aa24.1■■□□□ 1.45
TRIM39-211ENST00000458516 XRN1Q8IZH2 1706 aaKnown RBP24.1■■□□□ 1.45
TRIM39-211ENST00000458516 KNDC1Q76NI1 1749 aa24.09■■□□□ 1.45
TRIM39-211ENST00000458516 PIK3R4Q99570 1358 aa24.08■■□□□ 1.45
TRIM39-211ENST00000458516 PTPRUQ92729 1446 aa24.08■■□□□ 1.44
TRIM39-211ENST00000458516 NBPF1Q3BBV0 1214 aa24.06■■□□□ 1.44
TRIM39-211ENST00000458516 GPRASP1Q5JY77 1395 aa24.05■■□□□ 1.44
TRIM39-211ENST00000458516 TMEM132EQ6IEE7 984 aa24.05■■□□□ 1.44
TRIM39-211ENST00000458516 ROCK2O75116 1388 aaKnown RBP24.03■■□□□ 1.44
TRIM39-211ENST00000458516 YTHDC2Q9H6S0 1430 aaKnown RBP24.03■■□□□ 1.44
TRIM39-211ENST00000458516 ARHGEF28Q8N1W1 1705 aaKnown RBP24.03■■□□□ 1.44
TRIM39-211ENST00000458516 ZEB1P37275 1124 aaPredicted RBP24.02■■□□□ 1.44
TRIM39-211ENST00000458516 LRPPRCP42704 1394 aaKnown RBP24.02■■□□□ 1.44
TRIM39-211ENST00000458516 CPS1P31327 1500 aa24.01■■□□□ 1.43
TRIM39-211ENST00000458516 TECPR2O15040 1411 aa24■■□□□ 1.43
TRIM39-211ENST00000458516 KCNA6P17658 529 aa23.99■■□□□ 1.43
TRIM39-211ENST00000458516 ZNF335Q9H4Z2 1342 aaPredicted RBP23.99■■□□□ 1.43
TRIM39-211ENST00000458516 DLC1Q96QB1 1528 aa23.99■■□□□ 1.43
TRIM39-211ENST00000458516 NKTRP30414 1462 aaKnown RBP23.98■■□□□ 1.43
TRIM39-211ENST00000458516 ABCC11Q96J66 1382 aa23.97■■□□□ 1.43
TRIM39-211ENST00000458516 AMOTL2Q9Y2J4 779 aa23.97■■□□□ 1.43
TRIM39-211ENST00000458516 PTCH1Q13635 1447 aa23.96■■□□□ 1.43
TRIM39-211ENST00000458516 LTBP4Q8N2S1 1624 aa23.95■■□□□ 1.43
TRIM39-211ENST00000458516 STK26Q9P289 416 aa23.95■■□□□ 1.42
TRIM39-211ENST00000458516 XIRP1Q702N8 1843 aaKnown RBP23.94■■□□□ 1.42
TRIM39-211ENST00000458516 CARD11Q9BXL7 1154 aa23.94■■□□□ 1.42
TRIM39-211ENST00000458516 ROBO2Q9HCK4 1378 aa23.93■■□□□ 1.42
TRIM39-211ENST00000458516 TRAK1Q9UPV9 953 aa23.92■■□□□ 1.42
TRIM39-211ENST00000458516 FAM135BQ49AJ0 1406 aa23.9■■□□□ 1.42
TRIM39-211ENST00000458516 LRRC7Q96NW7 1537 aa23.89■■□□□ 1.41
TRIM39-211ENST00000458516 QRICH2Q9H0J4 1663 aa23.89■■□□□ 1.41
TRIM39-211ENST00000458516 PLEKHH1Q9ULM0 1364 aa23.88■■□□□ 1.41
TRIM39-211ENST00000458516 NALCNQ8IZF0 1738 aa23.87■■□□□ 1.41
TRIM39-211ENST00000458516 SIRT1Q96EB6 747 aa23.87■■□□□ 1.41
TRIM39-211ENST00000458516 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.87■■□□□ 1.41
TRIM39-211ENST00000458516 USP47Q96K76 1375 aa23.86■■□□□ 1.41
TRIM39-211ENST00000458516 EIF3AQ14152 1382 aaKnown RBP23.85■■□□□ 1.41
TRIM39-211ENST00000458516 WAPLQ7Z5K2 1190 aa23.84■■□□□ 1.41
TRIM39-211ENST00000458516 PRAM1Q96QH2 718 aa23.84■■□□□ 1.41
TRIM39-211ENST00000458516 PROSER2Q86WR7 435 aaPredicted RBP23.83■■□□□ 1.41
TRIM39-211ENST00000458516 TMEM94Q12767 1356 aa23.82■■□□□ 1.4
TRIM39-211ENST00000458516 ADGRB2O60241 1585 aa23.81■■□□□ 1.4
TRIM39-211ENST00000458516 CENPJQ9HC77 1338 aaPredicted RBP23.81■■□□□ 1.4
TRIM39-211ENST00000458516 RBM33Q96EV2 1170 aaKnown RBP23.8■■□□□ 1.4
TRIM39-211ENST00000458516 NCOA3Q9Y6Q9 1424 aa23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms