RNA–Protein interactions for RNA: ENST00000452489.6

PTPA-223, Transcript of protein phosphatase 2 phosphatase activator, humanhuman

TSL 1 (best) BASIC

Gene PTPA, Length 2,526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPA-223ENST00000452489 NAP1L2Q9ULW6 460 aaPredicted RBP23.48■■□□□ 1.35
PTPA-223ENST00000452489 PDZRN3Q9UPQ7 1066 aa23.48■■□□□ 1.35
PTPA-223ENST00000452489 CANXP27824 592 aaKnown RBP23.48■■□□□ 1.35
PTPA-223ENST00000452489 ABCC5O15440 1437 aa23.47■■□□□ 1.35
PTPA-223ENST00000452489 CHMP4BQ9H444 224 aaKnown RBP23.47■■□□□ 1.35
PTPA-223ENST00000452489 WDR43Q15061 677 aaKnown RBP eCLIP23.47■■□□□ 1.35
PTPA-223ENST00000452489 CCDC94Q9BW85 323 aaPredicted RBP23.47■■□□□ 1.35
PTPA-223ENST00000452489 PPP4R3BQ5MIZ7 849 aa23.46■■□□□ 1.35
PTPA-223ENST00000452489 PANK3Q9H999 370 aa23.46■■□□□ 1.35
PTPA-223ENST00000452489 TRMT2AQ8IZ69 625 aaKnown RBP23.46■■□□□ 1.35
PTPA-223ENST00000452489 ZNF500O60304 480 aaPredicted RBP23.45■■□□□ 1.34
PTPA-223ENST00000452489 SKOR2Q2VWA4 1001 aaPredicted RBP23.45■■□□□ 1.34
PTPA-223ENST00000452489 NKTRP30414 1462 aaKnown RBP23.45■■□□□ 1.34
PTPA-223ENST00000452489 GBP4Q96PP9 640 aa23.44■■□□□ 1.34
PTPA-223ENST00000452489 ZNF644Q9H582 1327 aaPredicted RBP23.44■■□□□ 1.34
PTPA-223ENST00000452489 SAMD9Q5K651 1589 aa23.43■■□□□ 1.34
PTPA-223ENST00000452489 NOL7Q9UMY1 257 aaKnown RBP23.43■■□□□ 1.34
PTPA-223ENST00000452489 NCOA3Q9Y6Q9 1424 aa23.43■■□□□ 1.34
PTPA-223ENST00000452489 CCDC146Q8IYE0 955 aa23.43■■□□□ 1.34
PTPA-223ENST00000452489 GAPVD1Q14C86 1478 aa23.43■■□□□ 1.34
PTPA-223ENST00000452489 PCDHB15Q9Y5E8 787 aa23.42■■□□□ 1.34
PTPA-223ENST00000452489 ARID3CA6NKF2 412 aa23.42■■□□□ 1.34
PTPA-223ENST00000452489 PDE3AQ14432 1141 aa23.41■■□□□ 1.34
PTPA-223ENST00000452489 CAMSAP2Q08AD1 1489 aa23.41■■□□□ 1.34
PTPA-223ENST00000452489 RAB3GAP1Q15042 981 aa23.39■■□□□ 1.34
PTPA-223ENST00000452489 KIAA0586Q9BVV6 1533 aa23.39■■□□□ 1.33
PTPA-223ENST00000452489 JARID2Q92833 1246 aaPredicted RBP23.38■■□□□ 1.33
PTPA-223ENST00000452489 DMRT2Q9Y5R5 561 aa23.38■■□□□ 1.33
PTPA-223ENST00000452489 ZMYM3Q14202 1370 aa23.37■■□□□ 1.33
PTPA-223ENST00000452489 NCLP19338 710 aaKnown RBP23.37■■□□□ 1.33
PTPA-223ENST00000452489 SASS6Q6UVJ0 657 aa23.37■■□□□ 1.33
PTPA-223ENST00000452489 PMFBP1Q8TBY8 1022 aa23.37■■□□□ 1.33
PTPA-223ENST00000452489 DISP3Q9P2K9 1392 aa23.36■■□□□ 1.33
PTPA-223ENST00000452489 HS1BP3Q53T59 392 aa23.36■■□□□ 1.33
PTPA-223ENST00000452489 FOXD4L1Q9NU39 408 aa23.36■■□□□ 1.33
PTPA-223ENST00000452489 DNMT1P26358 1616 aaKnown RBP23.36■■□□□ 1.33
PTPA-223ENST00000452489 TNNT2P45379 298 aaPredicted RBP23.36■■□□□ 1.33
PTPA-223ENST00000452489 CBX1P83916 185 aa23.36■■□□□ 1.33
PTPA-223ENST00000452489 TMEM51Q9NW97 253 aa23.35■■□□□ 1.33
PTPA-223ENST00000452489 EPRSP07814 1512 aaKnown RBP23.35■■□□□ 1.33
PTPA-223ENST00000452489 PPP2R1AP30153 589 aa23.34■■□□□ 1.33
PTPA-223ENST00000452489 SMC5Q8IY18 1101 aa23.34■■□□□ 1.33
PTPA-223ENST00000452489 APAF1O14727 1248 aa23.33■■□□□ 1.33
PTPA-223ENST00000452489 TNNQ9UQP3 1299 aa23.33■■□□□ 1.33
PTPA-223ENST00000452489 ZKSCAN5Q9Y2L8 839 aa23.33■■□□□ 1.33
PTPA-223ENST00000452489 ARHGEF12Q9NZN5 1544 aa23.33■■□□□ 1.33
PTPA-223ENST00000452489 DDX49Q9Y6V7 483 aaKnown RBP23.33■■□□□ 1.33
PTPA-223ENST00000452489 RAD54L2Q9Y4B4 1467 aa23.33■■□□□ 1.32
PTPA-223ENST00000452489 CSPP1Q1MSJ5 1256 aa23.32■■□□□ 1.32
PTPA-223ENST00000452489 TSC1Q92574 1164 aa23.32■■□□□ 1.32
PTPA-223ENST00000452489 HSP90AB1P08238 724 aaKnown RBP23.32■■□□□ 1.32
PTPA-223ENST00000452489 CIZ1Q9ULV3 898 aaPredicted RBP23.32■■□□□ 1.32
PTPA-223ENST00000452489 CDK13Q14004 1512 aaKnown RBP23.32■■□□□ 1.32
PTPA-223ENST00000452489 ZBTB7CA1YPR0 619 aa23.31■■□□□ 1.32
PTPA-223ENST00000452489 KIF20AO95235 890 aa23.31■■□□□ 1.32
PTPA-223ENST00000452489 PDLIM2Q96JY6 352 aa23.31■■□□□ 1.32
PTPA-223ENST00000452489 GTPBP4Q9BZE4 634 aaKnown RBP23.31■■□□□ 1.32
PTPA-223ENST00000452489 CLASP1Q7Z460 1538 aa23.31■■□□□ 1.32
PTPA-223ENST00000452489 PTMSP20962 102 aa23.3■■□□□ 1.32
PTPA-223ENST00000452489 COL17A1Q9UMD9 1497 aaPredicted RBP23.3■■□□□ 1.32
PTPA-223ENST00000452489 VGLL3A8MV65 326 aa23.3■■□□□ 1.32
PTPA-223ENST00000452489 E9PSI1 815 aa23.3■■□□□ 1.32
PTPA-223ENST00000452489 RLBP1P12271 317 aa23.3■■□□□ 1.32
PTPA-223ENST00000452489 SSFA2P28290 1259 aa23.3■■□□□ 1.32
PTPA-223ENST00000452489 RBSNQ9H1K0 784 aa23.3■■□□□ 1.32
PTPA-223ENST00000452489 NBPF1Q3BBV0 1214 aa23.29■■□□□ 1.32
PTPA-223ENST00000452489 IBTKQ9P2D0 1353 aaPredicted RBP23.29■■□□□ 1.32
PTPA-223ENST00000452489 KLHL40Q2TBA0 621 aa23.29■■□□□ 1.32
PTPA-223ENST00000452489 HMGXB3Q12766 1538 aa23.28■■□□□ 1.32
PTPA-223ENST00000452489 ZNF710Q8N1W2 664 aa23.28■■□□□ 1.32
PTPA-223ENST00000452489 NINLQ9Y2I6 1382 aa23.27■■□□□ 1.32
PTPA-223ENST00000452489 CUL7Q14999 1698 aa23.27■■□□□ 1.32
PTPA-223ENST00000452489 IPO4Q8TEX9 1081 aaKnown RBP23.27■■□□□ 1.32
PTPA-223ENST00000452489 ATP2B3Q16720 1220 aa23.26■■□□□ 1.31
PTPA-223ENST00000452489 SNX21Q969T3 373 aa23.26■■□□□ 1.31
PTPA-223ENST00000452489 SCAPERQ9BY12 1400 aa23.26■■□□□ 1.31
PTPA-223ENST00000452489 NESP48681 1621 aa23.26■■□□□ 1.31
PTPA-223ENST00000452489 CC2D2AQ9P2K1 1620 aa23.26■■□□□ 1.31
PTPA-223ENST00000452489 LETM1O95202 739 aaPredicted RBP23.26■■□□□ 1.31
PTPA-223ENST00000452489 TESK2Q96S53 571 aa23.26■■□□□ 1.31
PTPA-223ENST00000452489 CCDC144AA2RUR9 1427 aa23.25■■□□□ 1.31
PTPA-223ENST00000452489 ZNF445P59923 1031 aa23.25■■□□□ 1.31
PTPA-223ENST00000452489 RWDD1Q9H446 243 aaPredicted RBP23.25■■□□□ 1.31
PTPA-223ENST00000452489 CAVIN1Q6NZI2 390 aaKnown RBP23.24■■□□□ 1.31
PTPA-223ENST00000452489 PRDM2Q13029 1718 aa23.24■■□□□ 1.31
PTPA-223ENST00000452489 CD2BP2O95400 341 aaKnown RBP23.24■■□□□ 1.31
PTPA-223ENST00000452489 ZSCAN23Q3MJ62 389 aa23.23■■□□□ 1.31
PTPA-223ENST00000452489 ANKRD30AQ9BXX3 1397 aa23.23■■□□□ 1.31
PTPA-223ENST00000452489 GOLGA6L22H0YM25 854 aa23.23■■□□□ 1.31
PTPA-223ENST00000452489 ZNF830Q96NB3 372 aaPredicted RBP23.22■■□□□ 1.31
PTPA-223ENST00000452489 ZBTB22O15209 634 aa23.21■■□□□ 1.31
PTPA-223ENST00000452489 MYRIPQ8NFW9 859 aa23.21■■□□□ 1.31
PTPA-223ENST00000452489 BAG4O95429 457 aaKnown RBP23.21■■□□□ 1.31
PTPA-223ENST00000452489 PRIM1P49642 420 aaKnown RBP23.21■■□□□ 1.31
PTPA-223ENST00000452489 FAM177BA6PVY3 158 aa23.2■■□□□ 1.3
PTPA-223ENST00000452489 IGSF3O75054 1194 aa23.2■■□□□ 1.3
PTPA-223ENST00000452489 RBM25P49756 843 aaKnown RBP23.2■■□□□ 1.3
PTPA-223ENST00000452489 AEBP2Q6ZN18 517 aaPredicted RBP23.2■■□□□ 1.3
PTPA-223ENST00000452489 MCM5P33992 734 aa23.2■■□□□ 1.3
PTPA-223ENST00000452489 PLCD3Q8N3E9 789 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms