RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SIN3AQ96ST3 1273 aa16.83■□□□□ 0.28
SCN9A-204ENST00000452182 RNF216Q9NWF9 866 aaPredicted RBP16.83■□□□□ 0.28
SCN9A-204ENST00000452182 SLIT1O75093 1534 aa16.83■□□□□ 0.28
SCN9A-204ENST00000452182 ARHGAP23Q9P227 1491 aa16.81■□□□□ 0.28
SCN9A-204ENST00000452182 CHGAP10645 457 aaKnown RBP16.81■□□□□ 0.28
SCN9A-204ENST00000452182 TMEM2Q9UHN6 1383 aa16.81■□□□□ 0.28
SCN9A-204ENST00000452182 RPGRIP1LQ68CZ1 1315 aa16.8■□□□□ 0.28
SCN9A-204ENST00000452182 IFT172Q9UG01 1749 aa16.79■□□□□ 0.28
SCN9A-204ENST00000452182 NEXMIFQ5QGS0 1516 aa16.79■□□□□ 0.28
SCN9A-204ENST00000452182 ZFYVE9O95405 1425 aa16.79■□□□□ 0.28
SCN9A-204ENST00000452182 PPLO60437 1756 aa16.78■□□□□ 0.28
SCN9A-204ENST00000452182 NEUROD1Q13562 356 aa16.78■□□□□ 0.28
SCN9A-204ENST00000452182 RGL3Q3MIN7 710 aa16.77■□□□□ 0.27
SCN9A-204ENST00000452182 ZNF326Q5BKZ1 582 aaKnown RBP16.77■□□□□ 0.27
SCN9A-204ENST00000452182 STAC3Q96MF2 364 aa16.77■□□□□ 0.27
SCN9A-204ENST00000452182 RIMS2Q9UQ26 1411 aa16.76■□□□□ 0.27
SCN9A-204ENST00000452182 HDGFP51858 240 aaKnown RBP16.76■□□□□ 0.27
SCN9A-204ENST00000452182 TIMELESSQ9UNS1 1208 aa16.76■□□□□ 0.27
SCN9A-204ENST00000452182 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.75■□□□□ 0.27
SCN9A-204ENST00000452182 POLR1AO95602 1720 aaPredicted RBP16.74■□□□□ 0.27
SCN9A-204ENST00000452182 DMRT2Q9Y5R5 561 aa16.74■□□□□ 0.27
SCN9A-204ENST00000452182 TONSLQ96HA7 1378 aa16.73■□□□□ 0.27
SCN9A-204ENST00000452182 MYOM2P54296 1465 aa16.73■□□□□ 0.27
SCN9A-204ENST00000452182 SCAF11Q99590 1463 aaKnown RBP16.73■□□□□ 0.27
SCN9A-204ENST00000452182 HSPA2P54652 639 aa16.73■□□□□ 0.27
SCN9A-204ENST00000452182 ANKLE2Q86XL3 938 aa16.73■□□□□ 0.27
SCN9A-204ENST00000452182 EID1Q9Y6B2 187 aa16.73■□□□□ 0.27
SCN9A-204ENST00000452182 VGFO15240 615 aaPredicted RBP16.72■□□□□ 0.27
SCN9A-204ENST00000452182 TXNDC2Q86VQ3 553 aa16.72■□□□□ 0.27
SCN9A-204ENST00000452182 L3MBTL2Q969R5 705 aa16.72■□□□□ 0.27
SCN9A-204ENST00000452182 LTKP29376 864 aa16.71■□□□□ 0.27
SCN9A-204ENST00000452182 MED14O60244 1454 aa16.71■□□□□ 0.27
SCN9A-204ENST00000452182 STRCQ7RTU9 1775 aa16.71■□□□□ 0.26
SCN9A-204ENST00000452182 NRXN1Q9ULB1 1477 aa16.7■□□□□ 0.26
SCN9A-204ENST00000452182 DCAF11Q8TEB1 546 aa16.7■□□□□ 0.26
SCN9A-204ENST00000452182 PLEKHG1Q9ULL1 1385 aa16.69■□□□□ 0.26
SCN9A-204ENST00000452182 PPP1R15AO75807 674 aaPredicted RBP16.68■□□□□ 0.26
SCN9A-204ENST00000452182 SETBP1Q9Y6X0 1596 aa16.67■□□□□ 0.26
SCN9A-204ENST00000452182 PIK3C2GO75747 1445 aa16.67■□□□□ 0.26
SCN9A-204ENST00000452182 NUTM2DQ5VT03 806 aaPredicted RBP16.67■□□□□ 0.26
SCN9A-204ENST00000452182 IQGAP1P46940 1657 aa16.66■□□□□ 0.26
SCN9A-204ENST00000452182 ADGRF5Q8IZF2 1346 aa16.66■□□□□ 0.26
SCN9A-204ENST00000452182 NPHP4O75161 1426 aaPredicted RBP16.66■□□□□ 0.26
SCN9A-204ENST00000452182 NCKAP5LQ9HCH0 1330 aa16.66■□□□□ 0.26
SCN9A-204ENST00000452182 NRXN3Q9Y4C0 1643 aa16.65■□□□□ 0.26
SCN9A-204ENST00000452182 KDM2AQ9Y2K7 1162 aa16.65■□□□□ 0.26
SCN9A-204ENST00000452182 PRAG1Q86YV5 1406 aa16.64■□□□□ 0.25
SCN9A-204ENST00000452182 DIP2AQ14689 1571 aa16.64■□□□□ 0.25
SCN9A-204ENST00000452182 LAMC1P11047 1609 aa16.63■□□□□ 0.25
SCN9A-204ENST00000452182 KIAA1210Q9ULL0 1709 aa16.63■□□□□ 0.25
SCN9A-204ENST00000452182 ADAMTS13Q76LX8 1427 aa16.62■□□□□ 0.25
SCN9A-204ENST00000452182 SETD1AO15047 1707 aaKnown RBP16.62■□□□□ 0.25
SCN9A-204ENST00000452182 ZBTB22O15209 634 aa16.61■□□□□ 0.25
SCN9A-204ENST00000452182 HOXD11P31277 338 aaPredicted RBP16.61■□□□□ 0.25
SCN9A-204ENST00000452182 ALKQ9UM73 1620 aa16.61■□□□□ 0.25
SCN9A-204ENST00000452182 C14orf93Q9H972 538 aaKnown RBP16.59■□□□□ 0.25
SCN9A-204ENST00000452182 TBX22Q9Y458 520 aa16.59■□□□□ 0.25
SCN9A-204ENST00000452182 TRPM1Q7Z4N2 1603 aa16.58■□□□□ 0.25
SCN9A-204ENST00000452182 BCANQ96GW7 911 aa16.58■□□□□ 0.24
SCN9A-204ENST00000452182 NBPF8Q3BBV2 869 aa16.57■□□□□ 0.24
SCN9A-204ENST00000452182 PIK3R4Q99570 1358 aa16.57■□□□□ 0.24
SCN9A-204ENST00000452182 ZEB1P37275 1124 aaPredicted RBP16.56■□□□□ 0.24
SCN9A-204ENST00000452182 CFAP70Q5T0N1 1121 aa16.56■□□□□ 0.24
SCN9A-204ENST00000452182 SLC26A8Q96RN1 970 aa16.56■□□□□ 0.24
SCN9A-204ENST00000452182 ADGRB1O14514 1584 aa16.55■□□□□ 0.24
SCN9A-204ENST00000452182 RALGAPBQ86X10 1494 aa16.54■□□□□ 0.24
SCN9A-204ENST00000452182 ASXL1Q8IXJ9 1541 aa16.54■□□□□ 0.24
SCN9A-204ENST00000452182 CHD2O14647 1828 aaKnown RBP16.53■□□□□ 0.24
SCN9A-204ENST00000452182 METP08581 1390 aa16.53■□□□□ 0.24
SCN9A-204ENST00000452182 GPRASP1Q5JY77 1395 aa16.52■□□□□ 0.23
SCN9A-204ENST00000452182 NWD1Q149M9 1564 aa16.51■□□□□ 0.23
SCN9A-204ENST00000452182 FOXD4L1Q9NU39 408 aa16.5■□□□□ 0.23
SCN9A-204ENST00000452182 XRN1Q8IZH2 1706 aaKnown RBP16.5■□□□□ 0.23
SCN9A-204ENST00000452182 ROCK2O75116 1388 aaKnown RBP16.49■□□□□ 0.23
SCN9A-204ENST00000452182 NBPF1Q3BBV0 1214 aa16.49■□□□□ 0.23
SCN9A-204ENST00000452182 KNDC1Q76NI1 1749 aa16.49■□□□□ 0.23
SCN9A-204ENST00000452182 LRPPRCP42704 1394 aaKnown RBP16.49■□□□□ 0.23
SCN9A-204ENST00000452182 PTPRUQ92729 1446 aa16.48■□□□□ 0.23
SCN9A-204ENST00000452182 YTHDC2Q9H6S0 1430 aaKnown RBP16.48■□□□□ 0.23
SCN9A-204ENST00000452182 ABCC11Q96J66 1382 aa16.48■□□□□ 0.23
SCN9A-204ENST00000452182 KCNA6P17658 529 aa16.48■□□□□ 0.23
SCN9A-204ENST00000452182 TMEM132EQ6IEE7 984 aa16.48■□□□□ 0.23
SCN9A-204ENST00000452182 TECPR2O15040 1411 aa16.48■□□□□ 0.23
SCN9A-204ENST00000452182 STRCP1A6NGW2 1772 aa16.46■□□□□ 0.23
SCN9A-204ENST00000452182 DLC1Q96QB1 1528 aa16.46■□□□□ 0.23
SCN9A-204ENST00000452182 NKTRP30414 1462 aaKnown RBP16.45■□□□□ 0.22
SCN9A-204ENST00000452182 AMOTL2Q9Y2J4 779 aa16.45■□□□□ 0.22
SCN9A-204ENST00000452182 CPS1P31327 1500 aa16.45■□□□□ 0.22
SCN9A-204ENST00000452182 PTCH1Q13635 1447 aa16.45■□□□□ 0.22
SCN9A-204ENST00000452182 SIRT1Q96EB6 747 aa16.45■□□□□ 0.22
SCN9A-204ENST00000452182 CARD11Q9BXL7 1154 aa16.44■□□□□ 0.22
SCN9A-204ENST00000452182 ARHGEF28Q8N1W1 1705 aaKnown RBP16.43■□□□□ 0.22
SCN9A-204ENST00000452182 ZNF335Q9H4Z2 1342 aaPredicted RBP16.43■□□□□ 0.22
SCN9A-204ENST00000452182 FAM135BQ49AJ0 1406 aa16.43■□□□□ 0.22
SCN9A-204ENST00000452182 STK26Q9P289 416 aa16.41■□□□□ 0.22
SCN9A-204ENST00000452182 LTBP4Q8N2S1 1624 aa16.41■□□□□ 0.22
SCN9A-204ENST00000452182 ROBO2Q9HCK4 1378 aa16.41■□□□□ 0.22
SCN9A-204ENST00000452182 TRAK1Q9UPV9 953 aa16.41■□□□□ 0.22
SCN9A-204ENST00000452182 EIF3AQ14152 1382 aaKnown RBP16.4■□□□□ 0.22
SCN9A-204ENST00000452182 NCOA3Q9Y6Q9 1424 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms