RNA–Protein interactions for RNA: ENST00000452143.5

USP1-204, Transcript of ubiquitin specific peptidase 1, humanhuman

TSL 3

Gene USP1, Length 893 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-204ENST00000452143 IDI1Q13907 227 aa16.9■□□□□ 0.3
USP1-204ENST00000452143 NKTRP30414 1462 aaKnown RBP16.89■□□□□ 0.29
USP1-204ENST00000452143 SLC52A1Q9NWF4 448 aa16.89■□□□□ 0.29
USP1-204ENST00000452143 MYO5BQ9ULV0 1848 aa16.89■□□□□ 0.29
USP1-204ENST00000452143 FAM50AQ14320 339 aaKnown RBP16.88■□□□□ 0.29
USP1-204ENST00000452143 TMEM131LA2VDJ0 1609 aa16.85■□□□□ 0.29
USP1-204ENST00000452143 IQGAP3Q86VI3 1631 aa16.85■□□□□ 0.29
USP1-204ENST00000452143 ZFYVE9O95405 1425 aa16.85■□□□□ 0.29
USP1-204ENST00000452143 E9PCH4 1651 aa16.85■□□□□ 0.29
USP1-204ENST00000452143 KCNA6P17658 529 aa16.84■□□□□ 0.29
USP1-204ENST00000452143 TMEM94Q12767 1356 aa16.84■□□□□ 0.29
USP1-204ENST00000452143 ROCK1Q13464 1354 aa16.84■□□□□ 0.29
USP1-204ENST00000452143 FAM135BQ49AJ0 1406 aa16.84■□□□□ 0.29
USP1-204ENST00000452143 CHD2O14647 1828 aaKnown RBP16.83■□□□□ 0.28
USP1-204ENST00000452143 ROBO1Q9Y6N7 1651 aa16.82■□□□□ 0.28
USP1-204ENST00000452143 PLEKHG1Q9ULL1 1385 aa16.81■□□□□ 0.28
USP1-204ENST00000452143 SLC26A8Q96RN1 970 aa16.81■□□□□ 0.28
USP1-204ENST00000452143 DIP2AQ14689 1571 aa16.8■□□□□ 0.28
USP1-204ENST00000452143 RIMS2Q9UQ26 1411 aa16.79■□□□□ 0.28
USP1-204ENST00000452143 HDGFP51858 240 aaKnown RBP16.78■□□□□ 0.28
USP1-204ENST00000452143 MSH6P52701 1360 aa16.77■□□□□ 0.27
USP1-204ENST00000452143 PPP1R15AO75807 674 aaPredicted RBP16.76■□□□□ 0.27
USP1-204ENST00000452143 PROSER2Q86WR7 435 aaPredicted RBP16.76■□□□□ 0.27
USP1-204ENST00000452143 BCANQ96GW7 911 aa16.75■□□□□ 0.27
USP1-204ENST00000452143 NCOA3Q9Y6Q9 1424 aa16.74■□□□□ 0.27
USP1-204ENST00000452143 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.74■□□□□ 0.27
USP1-204ENST00000452143 SPHKAPQ2M3C7 1700 aa16.73■□□□□ 0.27
USP1-204ENST00000452143 PHLPP1O60346 1717 aa16.73■□□□□ 0.27
USP1-204ENST00000452143 PIK3R4Q99570 1358 aa16.72■□□□□ 0.27
USP1-204ENST00000452143 ADAMTS13Q76LX8 1427 aa16.71■□□□□ 0.27
USP1-204ENST00000452143 TRPM2O94759 1503 aa16.71■□□□□ 0.27
USP1-204ENST00000452143 TBX22Q9Y458 520 aa16.71■□□□□ 0.27
USP1-204ENST00000452143 NUP155O75694 1391 aa16.7■□□□□ 0.26
USP1-204ENST00000452143 DCAF8L1A6NGE4 600 aa16.69■□□□□ 0.26
USP1-204ENST00000452143 RBM33Q96EV2 1170 aaKnown RBP16.69■□□□□ 0.26
USP1-204ENST00000452143 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.68■□□□□ 0.26
USP1-204ENST00000452143 COL16A1Q07092 1604 aaPredicted RBP16.67■□□□□ 0.26
USP1-204ENST00000452143 CHGAP10645 457 aaKnown RBP16.67■□□□□ 0.26
USP1-204ENST00000452143 SETBP1Q9Y6X0 1596 aa16.67■□□□□ 0.26
USP1-204ENST00000452143 NRXN3Q9Y4C0 1643 aa16.67■□□□□ 0.26
USP1-204ENST00000452143 XRN1Q8IZH2 1706 aaKnown RBP16.66■□□□□ 0.26
USP1-204ENST00000452143 SLAIN2Q9P270 581 aa16.66■□□□□ 0.26
USP1-204ENST00000452143 RGS17Q9UGC6 210 aaPredicted RBP16.66■□□□□ 0.26
USP1-204ENST00000452143 AHDC1Q5TGY3 1603 aaPredicted RBP16.64■□□□□ 0.25
USP1-204ENST00000452143 JCADQ9P266 1359 aa16.64■□□□□ 0.25
USP1-204ENST00000452143 DCCP43146 1447 aa16.63■□□□□ 0.25
USP1-204ENST00000452143 ITGAEP38570 1179 aa16.62■□□□□ 0.25
USP1-204ENST00000452143 SHPRHQ149N8 1683 aa16.62■□□□□ 0.25
USP1-204ENST00000452143 RRBP1Q9P2E9 1410 aaKnown RBP16.62■□□□□ 0.25
USP1-204ENST00000452143 KIF1BO60333 1816 aa16.61■□□□□ 0.25
USP1-204ENST00000452143 CLTCL1P53675 1640 aa16.61■□□□□ 0.25
USP1-204ENST00000452143 C14orf37Q86TY3 774 aa16.61■□□□□ 0.25
USP1-204ENST00000452143 CADPS2Q86UW7 1296 aa16.61■□□□□ 0.25
USP1-204ENST00000452143 NUTM2DQ5VT03 806 aaPredicted RBP16.6■□□□□ 0.25
USP1-204ENST00000452143 RNF39Q9H2S5 420 aa16.6■□□□□ 0.25
USP1-204ENST00000452143 C19orf44Q9H6X5 657 aa16.6■□□□□ 0.25
USP1-204ENST00000452143 PTPRUQ92729 1446 aa16.6■□□□□ 0.25
USP1-204ENST00000452143 NEXMIFQ5QGS0 1516 aa16.6■□□□□ 0.25
USP1-204ENST00000452143 ATF3P18847 181 aa16.58■□□□□ 0.24
USP1-204ENST00000452143 NAIPQ13075 1403 aa16.57■□□□□ 0.24
USP1-204ENST00000452143 SPATA31A6Q5VVP1 1343 aa16.57■□□□□ 0.24
USP1-204ENST00000452143 AMOTL2Q9Y2J4 779 aa16.57■□□□□ 0.24
USP1-204ENST00000452143 NHSL1Q5SYE7 1610 aa16.56■□□□□ 0.24
USP1-204ENST00000452143 POTEAQ6S8J7 498 aa16.55■□□□□ 0.24
USP1-204ENST00000452143 LRP6O75581 1613 aa16.55■□□□□ 0.24
USP1-204ENST00000452143 ASXL1Q8IXJ9 1541 aa16.55■□□□□ 0.24
USP1-204ENST00000452143 NALCNQ8IZF0 1738 aa16.54■□□□□ 0.24
USP1-204ENST00000452143 ZNF326Q5BKZ1 582 aaKnown RBP16.54■□□□□ 0.24
USP1-204ENST00000452143 PPARGC1BQ86YN6 1023 aaKnown RBP16.53■□□□□ 0.24
USP1-204ENST00000452143 SETD1AO15047 1707 aaKnown RBP16.53■□□□□ 0.24
USP1-204ENST00000452143 HFM1A2PYH4 1435 aa16.53■□□□□ 0.24
USP1-204ENST00000452143 ADGRL3Q9HAR2 1447 aa16.53■□□□□ 0.24
USP1-204ENST00000452143 MST1RQ04912 1400 aa16.52■□□□□ 0.23
USP1-204ENST00000452143 METP08581 1390 aa16.51■□□□□ 0.23
USP1-204ENST00000452143 BRINP3Q76B58 766 aa16.51■□□□□ 0.23
USP1-204ENST00000452143 PTCH1Q13635 1447 aa16.5■□□□□ 0.23
USP1-204ENST00000452143 PRAG1Q86YV5 1406 aa16.49■□□□□ 0.23
USP1-204ENST00000452143 SETD5Q9C0A6 1442 aa16.49■□□□□ 0.23
USP1-204ENST00000452143 PPLO60437 1756 aa16.49■□□□□ 0.23
USP1-204ENST00000452143 LAMC1P11047 1609 aa16.47■□□□□ 0.23
USP1-204ENST00000452143 HOXD11P31277 338 aaPredicted RBP16.46■□□□□ 0.23
USP1-204ENST00000452143 MEX3CQ5U5Q3 659 aaKnown RBP16.46■□□□□ 0.23
USP1-204ENST00000452143 ZNF772Q68DY9 489 aaPredicted RBP16.46■□□□□ 0.23
USP1-204ENST00000452143 VGFO15240 615 aaPredicted RBP16.43■□□□□ 0.22
USP1-204ENST00000452143 RPGRIP1LQ68CZ1 1315 aa16.43■□□□□ 0.22
USP1-204ENST00000452143 C1orf167Q5SNV9 1468 aa16.41■□□□□ 0.22
USP1-204ENST00000452143 CDK12Q9NYV4 1490 aaPredicted RBP16.41■□□□□ 0.22
USP1-204ENST00000452143 IFT172Q9UG01 1749 aa16.4■□□□□ 0.22
USP1-204ENST00000452143 TRIM52Q96A61 297 aa16.4■□□□□ 0.22
USP1-204ENST00000452143 LRRC59Q96AG4 307 aaKnown RBP16.4■□□□□ 0.22
USP1-204ENST00000452143 SLC4A1APQ9BWU0 796 aaKnown RBP16.4■□□□□ 0.22
USP1-204ENST00000452143 CDC42BPGQ6DT37 1551 aa16.39■□□□□ 0.21
USP1-204ENST00000452143 PNPLA6Q8IY17 1366 aa16.38■□□□□ 0.21
USP1-204ENST00000452143 ROBO2Q9HCK4 1378 aa16.38■□□□□ 0.21
USP1-204ENST00000452143 CCDC144AA2RUR9 1427 aa16.36■□□□□ 0.21
USP1-204ENST00000452143 KNDC1Q76NI1 1749 aa16.36■□□□□ 0.21
USP1-204ENST00000452143 COL22A1Q8NFW1 1626 aaPredicted RBP16.35■□□□□ 0.21
USP1-204ENST00000452143 NUTM2BA6NNL0 878 aaPredicted RBP16.35■□□□□ 0.21
USP1-204ENST00000452143 NUTM2EB1AL46 878 aaPredicted RBP16.35■□□□□ 0.21
USP1-204ENST00000452143 C1QBPQ07021 282 aaKnown RBP16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms