RNA–Protein interactions for RNA: ENST00000451154.5

USP42-204, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 520 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-204ENST00000451154 CHGAP10645 457 aaKnown RBP41.47■■■■■ 4.23
USP42-204ENST00000451154 NUP155O75694 1391 aa41.45■■■■■ 4.23
USP42-204ENST00000451154 PROSER2Q86WR7 435 aaPredicted RBP41.44■■■■■ 4.22
USP42-204ENST00000451154 RBM33Q96EV2 1170 aaKnown RBP41.44■■■■■ 4.22
USP42-204ENST00000451154 E9PCH4 1651 aa41.43■■■■■ 4.22
USP42-204ENST00000451154 TMEM94Q12767 1356 aa41.42■■■■■ 4.22
USP42-204ENST00000451154 HDGFP51858 240 aaKnown RBP41.42■■■■■ 4.22
USP42-204ENST00000451154 ZFYVE9O95405 1425 aa41.42■■■■■ 4.22
USP42-204ENST00000451154 RIMS2Q9UQ26 1411 aa41.42■■■■■ 4.22
USP42-204ENST00000451154 TMEM131LA2VDJ0 1609 aa41.41■■■■■ 4.22
USP42-204ENST00000451154 PPP1R15AO75807 674 aaPredicted RBP41.41■■■■■ 4.22
USP42-204ENST00000451154 IQGAP3Q86VI3 1631 aa41.4■■■■■ 4.22
USP42-204ENST00000451154 MED1Q15648 1581 aaPredicted RBP41.39■■■■■ 4.22
USP42-204ENST00000451154 PLEKHG1Q9ULL1 1385 aa41.36■■■■■ 4.21
USP42-204ENST00000451154 NUTM2DQ5VT03 806 aaPredicted RBP41.35■■■■■ 4.21
USP42-204ENST00000451154 ABCF1Q8NE71 845 aaKnown RBP eCLIP41.31■■■■■ 4.2
USP42-204ENST00000451154 TBX22Q9Y458 520 aa41.26■■■■■ 4.2
USP42-204ENST00000451154 NWD1Q149M9 1564 aa41.25■■■■■ 4.19
USP42-204ENST00000451154 FAM135BQ49AJ0 1406 aa41.24■■■■■ 4.19
USP42-204ENST00000451154 NKTRP30414 1462 aaKnown RBP41.23■■■■■ 4.19
USP42-204ENST00000451154 CHD2O14647 1828 aaKnown RBP41.22■■■■■ 4.19
USP42-204ENST00000451154 PHF23Q9BUL5 403 aaPredicted RBP41.21■■■■■ 4.19
USP42-204ENST00000451154 RRBP1Q9P2E9 1410 aaKnown RBP41.2■■■■■ 4.19
USP42-204ENST00000451154 MSH6P52701 1360 aa41.16■■■■■ 4.18
USP42-204ENST00000451154 ADAMTS13Q76LX8 1427 aa41.15■■■■■ 4.18
USP42-204ENST00000451154 SLAIN2Q9P270 581 aa41.11■■■■■ 4.17
USP42-204ENST00000451154 ROBO1Q9Y6N7 1651 aa41.09■■■■■ 4.17
USP42-204ENST00000451154 NAIPQ13075 1403 aa41.08■■■■■ 4.17
USP42-204ENST00000451154 SPHKAPQ2M3C7 1700 aa41.07■■■■■ 4.17
USP42-204ENST00000451154 ZNF326Q5BKZ1 582 aaKnown RBP41.06■■■■■ 4.16
USP42-204ENST00000451154 C14orf37Q86TY3 774 aa41.04■■■■■ 4.16
USP42-204ENST00000451154 PIK3R4Q99570 1358 aa41.02■■■■■ 4.16
USP42-204ENST00000451154 DIP2AQ14689 1571 aa41.02■■■■■ 4.16
USP42-204ENST00000451154 AMOTL2Q9Y2J4 779 aa41.01■■■■■ 4.16
USP42-204ENST00000451154 TRIM52Q96A61 297 aa40.99■■■■■ 4.15
USP42-204ENST00000451154 NCOA3Q9Y6Q9 1424 aa40.99■■■■■ 4.15
USP42-204ENST00000451154 PTPRUQ92729 1446 aa40.96■■■■■ 4.15
USP42-204ENST00000451154 TRPM2O94759 1503 aa40.94■■■■■ 4.14
USP42-204ENST00000451154 C19orf44Q9H6X5 657 aa40.94■■■■■ 4.14
USP42-204ENST00000451154 RGS17Q9UGC6 210 aaPredicted RBP40.94■■■■■ 4.14
USP42-204ENST00000451154 CLTCL1P53675 1640 aa40.91■■■■■ 4.14
USP42-204ENST00000451154 ATF3P18847 181 aa40.89■■■■■ 4.14
USP42-204ENST00000451154 HFM1A2PYH4 1435 aa40.89■■■■■ 4.14
USP42-204ENST00000451154 CADPS2Q86UW7 1296 aa40.88■■■■■ 4.13
USP42-204ENST00000451154 NRXN3Q9Y4C0 1643 aa40.88■■■■■ 4.13
USP42-204ENST00000451154 SIPA1L2Q9P2F8 1722 aaPredicted RBP40.87■■■■■ 4.13
USP42-204ENST00000451154 PHLPP1O60346 1717 aa40.86■■■■■ 4.13
USP42-204ENST00000451154 SETBP1Q9Y6X0 1596 aa40.85■■■■■ 4.13
USP42-204ENST00000451154 METP08581 1390 aa40.84■■■■■ 4.13
USP42-204ENST00000451154 SLC4A1APQ9BWU0 796 aaKnown RBP40.83■■■■■ 4.13
USP42-204ENST00000451154 KIF1BO60333 1816 aa40.81■■■■■ 4.12
USP42-204ENST00000451154 NEXMIFQ5QGS0 1516 aa40.8■■■■■ 4.12
USP42-204ENST00000451154 JCADQ9P266 1359 aa40.75■■■■■ 4.11
USP42-204ENST00000451154 XRN1Q8IZH2 1706 aaKnown RBP40.74■■■■■ 4.11
USP42-204ENST00000451154 POTEAQ6S8J7 498 aa40.71■■■■■ 4.11
USP42-204ENST00000451154 FOXD1Q16676 465 aa40.7■■■■■ 4.11
USP42-204ENST00000451154 COL16A1Q07092 1604 aaPredicted RBP40.7■■■■■ 4.11
USP42-204ENST00000451154 VGFO15240 615 aaPredicted RBP40.69■■■■■ 4.1
USP42-204ENST00000451154 BRINP3Q76B58 766 aa40.68■■■■■ 4.1
USP42-204ENST00000451154 DCCP43146 1447 aa40.63■■■■■ 4.09
USP42-204ENST00000451154 RPGRIP1LQ68CZ1 1315 aa40.63■■■■■ 4.09
USP42-204ENST00000451154 AHDC1Q5TGY3 1603 aaPredicted RBP40.61■■■■■ 4.09
USP42-204ENST00000451154 MST1RQ04912 1400 aa40.57■■■■■ 4.08
USP42-204ENST00000451154 SPATA31A6Q5VVP1 1343 aa40.56■■■■■ 4.08
USP42-204ENST00000451154 MPHOSPH9Q99550 1183 aa40.55■■■■■ 4.08
USP42-204ENST00000451154 ADGRL3Q9HAR2 1447 aa40.54■■■■■ 4.08
USP42-204ENST00000451154 MEX3CQ5U5Q3 659 aaKnown RBP40.51■■■■■ 4.08
USP42-204ENST00000451154 ASXL1Q8IXJ9 1541 aa40.51■■■■■ 4.08
USP42-204ENST00000451154 LRP6O75581 1613 aa40.5■■■■■ 4.07
USP42-204ENST00000451154 PPLO60437 1756 aa40.5■■■■■ 4.07
USP42-204ENST00000451154 SETD1AO15047 1707 aaKnown RBP40.5■■■■■ 4.07
USP42-204ENST00000451154 RGL3Q3MIN7 710 aa40.49■■■■■ 4.07
USP42-204ENST00000451154 ROBO2Q9HCK4 1378 aa40.48■■■■■ 4.07
USP42-204ENST00000451154 NALCNQ8IZF0 1738 aa40.47■■■■■ 4.07
USP42-204ENST00000451154 DDX17Q92841 729 aaKnown RBP40.47■■■■■ 4.07
USP42-204ENST00000451154 SHPRHQ149N8 1683 aa40.46■■■■■ 4.07
USP42-204ENST00000451154 CCDC144AA2RUR9 1427 aa40.45■■■■■ 4.07
USP42-204ENST00000451154 NUTM2BA6NNL0 878 aaPredicted RBP40.44■■■■■ 4.06
USP42-204ENST00000451154 NUTM2EB1AL46 878 aaPredicted RBP40.44■■■■■ 4.06
USP42-204ENST00000451154 NUTM2AQ8IVF1 878 aaPredicted RBP40.44■■■■■ 4.06
USP42-204ENST00000451154 PTCH1Q13635 1447 aa40.43■■■■■ 4.06
USP42-204ENST00000451154 ADGRF5Q8IZF2 1346 aa40.42■■■■■ 4.06
USP42-204ENST00000451154 LRRC59Q96AG4 307 aaKnown RBP40.4■■■■■ 4.06
USP42-204ENST00000451154 SETD5Q9C0A6 1442 aa40.39■■■■■ 4.06
USP42-204ENST00000451154 C1orf167Q5SNV9 1468 aa40.38■■■■■ 4.05
USP42-204ENST00000451154 NHSL1Q5SYE7 1610 aa40.38■■■■■ 4.05
USP42-204ENST00000451154 SPATA31E1Q6ZUB1 1445 aa40.36■■■■■ 4.05
USP42-204ENST00000451154 ZNF772Q68DY9 489 aaPredicted RBP40.34■■■■■ 4.05
USP42-204ENST00000451154 ORAI2Q96SN7 254 aa40.33■■■■■ 4.05
USP42-204ENST00000451154 PRAG1Q86YV5 1406 aa40.32■■■■■ 4.04
USP42-204ENST00000451154 STK26Q9P289 416 aa40.31■■■■■ 4.04
USP42-204ENST00000451154 ANKRD30BQ9BXX2 1392 aa40.29■■■■■ 4.04
USP42-204ENST00000451154 TMEM132EQ6IEE7 984 aa40.26■■■■■ 4.04
USP42-204ENST00000451154 ACIN1Q9UKV3 1341 aaKnown RBP40.25■■■■■ 4.03
USP42-204ENST00000451154 WAPLQ7Z5K2 1190 aa40.24■■■■■ 4.03
USP42-204ENST00000451154 PNPLA6Q8IY17 1366 aa40.23■■■■■ 4.03
USP42-204ENST00000451154 IFT172Q9UG01 1749 aa40.22■■■■■ 4.03
USP42-204ENST00000451154 AFF2P51816 1311 aa40.2■■■■■ 4.03
USP42-204ENST00000451154 LRPPRCP42704 1394 aaKnown RBP40.18■■■■■ 4.02
USP42-204ENST00000451154 SOS2Q07890 1332 aaPredicted RBP40.17■■■■■ 4.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms