RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 RGL3Q3MIN7 710 aa18.98■□□□□ 0.63
VPS33A-202ENST00000451053 SCAF11Q99590 1463 aaKnown RBP18.97■□□□□ 0.63
VPS33A-202ENST00000451053 NUTM2DQ5VT03 806 aaPredicted RBP18.97■□□□□ 0.63
VPS33A-202ENST00000451053 TXNDC2Q86VQ3 553 aa18.97■□□□□ 0.63
VPS33A-202ENST00000451053 ANKLE2Q86XL3 938 aa18.97■□□□□ 0.63
VPS33A-202ENST00000451053 NEUROD1Q13562 356 aa18.95■□□□□ 0.62
VPS33A-202ENST00000451053 CCER1Q8TC90 406 aaPredicted RBP18.95■□□□□ 0.62
VPS33A-202ENST00000451053 EID1Q9Y6B2 187 aa18.95■□□□□ 0.62
VPS33A-202ENST00000451053 PPLO60437 1756 aa18.95■□□□□ 0.62
VPS33A-202ENST00000451053 RPGRIP1LQ68CZ1 1315 aa18.94■□□□□ 0.62
VPS33A-202ENST00000451053 IFT172Q9UG01 1749 aa18.94■□□□□ 0.62
VPS33A-202ENST00000451053 MED14O60244 1454 aa18.93■□□□□ 0.62
VPS33A-202ENST00000451053 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.93■□□□□ 0.62
VPS33A-202ENST00000451053 NPHP4O75161 1426 aaPredicted RBP18.92■□□□□ 0.62
VPS33A-202ENST00000451053 PPP1R15AO75807 674 aaPredicted RBP18.92■□□□□ 0.62
VPS33A-202ENST00000451053 HDGFP51858 240 aaKnown RBP18.92■□□□□ 0.62
VPS33A-202ENST00000451053 SENP3Q9H4L4 574 aaPredicted RBP18.91■□□□□ 0.62
VPS33A-202ENST00000451053 CLSPNQ9HAW4 1339 aa18.91■□□□□ 0.62
VPS33A-202ENST00000451053 IQGAP1P46940 1657 aa18.91■□□□□ 0.62
VPS33A-202ENST00000451053 PLEKHG1Q9ULL1 1385 aa18.9■□□□□ 0.62
VPS33A-202ENST00000451053 VGFO15240 615 aaPredicted RBP18.87■□□□□ 0.61
VPS33A-202ENST00000451053 MYOM2P54296 1465 aa18.87■□□□□ 0.61
VPS33A-202ENST00000451053 ADGRF5Q8IZF2 1346 aa18.87■□□□□ 0.61
VPS33A-202ENST00000451053 NRXN3Q9Y4C0 1643 aa18.86■□□□□ 0.61
VPS33A-202ENST00000451053 DCAF11Q8TEB1 546 aa18.86■□□□□ 0.61
VPS33A-202ENST00000451053 L3MBTL2Q969R5 705 aa18.85■□□□□ 0.61
VPS33A-202ENST00000451053 BCANQ96GW7 911 aa18.85■□□□□ 0.61
VPS33A-202ENST00000451053 KDM2AQ9Y2K7 1162 aa18.85■□□□□ 0.61
VPS33A-202ENST00000451053 DMRT2Q9Y5R5 561 aa18.85■□□□□ 0.61
VPS33A-202ENST00000451053 SETBP1Q9Y6X0 1596 aa18.85■□□□□ 0.61
VPS33A-202ENST00000451053 NRXN1Q9ULB1 1477 aa18.84■□□□□ 0.61
VPS33A-202ENST00000451053 ADAMTS13Q76LX8 1427 aa18.83■□□□□ 0.61
VPS33A-202ENST00000451053 SLC26A8Q96RN1 970 aa18.83■□□□□ 0.6
VPS33A-202ENST00000451053 TONSLQ96HA7 1378 aa18.82■□□□□ 0.6
VPS33A-202ENST00000451053 PIK3C2GO75747 1445 aa18.82■□□□□ 0.6
VPS33A-202ENST00000451053 DIP2AQ14689 1571 aa18.8■□□□□ 0.6
VPS33A-202ENST00000451053 ALKQ9UM73 1620 aa18.79■□□□□ 0.6
VPS33A-202ENST00000451053 SETD1AO15047 1707 aaKnown RBP18.78■□□□□ 0.6
VPS33A-202ENST00000451053 STAC3Q96MF2 364 aa18.78■□□□□ 0.6
VPS33A-202ENST00000451053 TBX22Q9Y458 520 aa18.78■□□□□ 0.6
VPS33A-202ENST00000451053 PRAG1Q86YV5 1406 aa18.76■□□□□ 0.59
VPS33A-202ENST00000451053 ZEB1P37275 1124 aaPredicted RBP18.76■□□□□ 0.59
VPS33A-202ENST00000451053 ZNF335Q9H4Z2 1342 aaPredicted RBP18.75■□□□□ 0.59
VPS33A-202ENST00000451053 METP08581 1390 aa18.75■□□□□ 0.59
VPS33A-202ENST00000451053 CFAP70Q5T0N1 1121 aa18.74■□□□□ 0.59
VPS33A-202ENST00000451053 C14orf93Q9H972 538 aaKnown RBP18.74■□□□□ 0.59
VPS33A-202ENST00000451053 LAMC1P11047 1609 aa18.74■□□□□ 0.59
VPS33A-202ENST00000451053 ASXL1Q8IXJ9 1541 aa18.74■□□□□ 0.59
VPS33A-202ENST00000451053 STRCP1A6NGW2 1772 aa18.73■□□□□ 0.59
VPS33A-202ENST00000451053 PTPRUQ92729 1446 aa18.72■□□□□ 0.59
VPS33A-202ENST00000451053 NBPF8Q3BBV2 869 aa18.71■□□□□ 0.59
VPS33A-202ENST00000451053 TIMELESSQ9UNS1 1208 aa18.71■□□□□ 0.59
VPS33A-202ENST00000451053 CHD2O14647 1828 aaKnown RBP18.71■□□□□ 0.59
VPS33A-202ENST00000451053 NWD1Q149M9 1564 aa18.71■□□□□ 0.59
VPS33A-202ENST00000451053 PIK3R4Q99570 1358 aa18.7■□□□□ 0.58
VPS33A-202ENST00000451053 TMEM132EQ6IEE7 984 aa18.69■□□□□ 0.58
VPS33A-202ENST00000451053 LTBP4Q8N2S1 1624 aa18.69■□□□□ 0.58
VPS33A-202ENST00000451053 KIAA1210Q9ULL0 1709 aa18.69■□□□□ 0.58
VPS33A-202ENST00000451053 ADGRB1O14514 1584 aa18.68■□□□□ 0.58
VPS33A-202ENST00000451053 KCNA6P17658 529 aa18.68■□□□□ 0.58
VPS33A-202ENST00000451053 XRN1Q8IZH2 1706 aaKnown RBP18.68■□□□□ 0.58
VPS33A-202ENST00000451053 TRPM1Q7Z4N2 1603 aa18.67■□□□□ 0.58
VPS33A-202ENST00000451053 AMOTL2Q9Y2J4 779 aa18.66■□□□□ 0.58
VPS33A-202ENST00000451053 NBPF1Q3BBV0 1214 aa18.65■□□□□ 0.58
VPS33A-202ENST00000451053 YTHDC2Q9H6S0 1430 aaKnown RBP18.65■□□□□ 0.58
VPS33A-202ENST00000451053 NKTRP30414 1462 aaKnown RBP18.65■□□□□ 0.58
VPS33A-202ENST00000451053 CPS1P31327 1500 aa18.64■□□□□ 0.58
VPS33A-202ENST00000451053 LRPPRCP42704 1394 aaKnown RBP18.64■□□□□ 0.57
VPS33A-202ENST00000451053 STK26Q9P289 416 aa18.63■□□□□ 0.57
VPS33A-202ENST00000451053 RALGAPBQ86X10 1494 aa18.62■□□□□ 0.57
VPS33A-202ENST00000451053 LRRC7Q96NW7 1537 aa18.62■□□□□ 0.57
VPS33A-202ENST00000451053 KNDC1Q76NI1 1749 aa18.61■□□□□ 0.57
VPS33A-202ENST00000451053 TECPR2O15040 1411 aa18.61■□□□□ 0.57
VPS33A-202ENST00000451053 ROBO2Q9HCK4 1378 aa18.61■□□□□ 0.57
VPS33A-202ENST00000451053 PTCH1Q13635 1447 aa18.6■□□□□ 0.57
VPS33A-202ENST00000451053 ROCK2O75116 1388 aaKnown RBP18.6■□□□□ 0.57
VPS33A-202ENST00000451053 ABCC11Q96J66 1382 aa18.6■□□□□ 0.57
VPS33A-202ENST00000451053 PROSER2Q86WR7 435 aaPredicted RBP18.6■□□□□ 0.57
VPS33A-202ENST00000451053 RBM33Q96EV2 1170 aaKnown RBP18.59■□□□□ 0.57
VPS33A-202ENST00000451053 GPRASP1Q5JY77 1395 aa18.58■□□□□ 0.57
VPS33A-202ENST00000451053 TMEM94Q12767 1356 aa18.57■□□□□ 0.56
VPS33A-202ENST00000451053 TRAK1Q9UPV9 953 aa18.57■□□□□ 0.56
VPS33A-202ENST00000451053 XIRP1Q702N8 1843 aaKnown RBP18.57■□□□□ 0.56
VPS33A-202ENST00000451053 DLC1Q96QB1 1528 aa18.57■□□□□ 0.56
VPS33A-202ENST00000451053 PLEKHH1Q9ULM0 1364 aa18.55■□□□□ 0.56
VPS33A-202ENST00000451053 ARHGEF28Q8N1W1 1705 aaKnown RBP18.55■□□□□ 0.56
VPS33A-202ENST00000451053 WAPLQ7Z5K2 1190 aa18.54■□□□□ 0.56
VPS33A-202ENST00000451053 FAM135BQ49AJ0 1406 aa18.54■□□□□ 0.56
VPS33A-202ENST00000451053 CERKQ8TCT0 537 aa18.53■□□□□ 0.56
VPS33A-202ENST00000451053 CARD11Q9BXL7 1154 aa18.53■□□□□ 0.56
VPS33A-202ENST00000451053 SIRT1Q96EB6 747 aa18.52■□□□□ 0.56
VPS33A-202ENST00000451053 PRAM1Q96QH2 718 aa18.52■□□□□ 0.56
VPS33A-202ENST00000451053 NALCNQ8IZF0 1738 aa18.51■□□□□ 0.55
VPS33A-202ENST00000451053 NCOA3Q9Y6Q9 1424 aa18.5■□□□□ 0.55
VPS33A-202ENST00000451053 SAFB2Q14151 953 aaKnown RBP eCLIP18.5■□□□□ 0.55
VPS33A-202ENST00000451053 ADGRL3Q9HAR2 1447 aa18.49■□□□□ 0.55
VPS33A-202ENST00000451053 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.49■□□□□ 0.55
VPS33A-202ENST00000451053 C14orf37Q86TY3 774 aa18.49■□□□□ 0.55
VPS33A-202ENST00000451053 POGKQ9P215 609 aa18.49■□□□□ 0.55
VPS33A-202ENST00000451053 IQSEC2Q5JU85 1478 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms