RNA–Protein interactions for RNA: ENST00000448310.1

CBX4-202, Transcript of chromobox 4, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CBX4, Length 718 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-202ENST00000448310 IQGAP3Q86VI3 1631 aa43.4■■■■■ 4.54
CBX4-202ENST00000448310 TMEM131LA2VDJ0 1609 aa43.4■■■■■ 4.54
CBX4-202ENST00000448310 KCNA6P17658 529 aa43.38■■■■■ 4.53
CBX4-202ENST00000448310 BCANQ96GW7 911 aa43.37■■■■■ 4.53
CBX4-202ENST00000448310 ZFYVE9O95405 1425 aa43.37■■■■■ 4.53
CBX4-202ENST00000448310 TMEM94Q12767 1356 aa43.36■■■■■ 4.53
CBX4-202ENST00000448310 RIMS2Q9UQ26 1411 aa43.33■■■■■ 4.53
CBX4-202ENST00000448310 RBM33Q96EV2 1170 aaKnown RBP43.32■■■■■ 4.53
CBX4-202ENST00000448310 NWD1Q149M9 1564 aa43.31■■■■■ 4.52
CBX4-202ENST00000448310 CHGAP10645 457 aaKnown RBP43.3■■■■■ 4.52
CBX4-202ENST00000448310 NUP155O75694 1391 aa43.29■■■■■ 4.52
CBX4-202ENST00000448310 PROSER2Q86WR7 435 aaPredicted RBP43.29■■■■■ 4.52
CBX4-202ENST00000448310 PPP1R15AO75807 674 aaPredicted RBP43.28■■■■■ 4.52
CBX4-202ENST00000448310 PLEKHG1Q9ULL1 1385 aa43.28■■■■■ 4.52
CBX4-202ENST00000448310 NKTRP30414 1462 aaKnown RBP43.25■■■■■ 4.51
CBX4-202ENST00000448310 CHD2O14647 1828 aaKnown RBP43.22■■■■■ 4.51
CBX4-202ENST00000448310 HDGFP51858 240 aaKnown RBP43.21■■■■■ 4.51
CBX4-202ENST00000448310 NUTM2DQ5VT03 806 aaPredicted RBP43.19■■■■■ 4.5
CBX4-202ENST00000448310 FAM135BQ49AJ0 1406 aa43.15■■■■■ 4.5
CBX4-202ENST00000448310 ABCF1Q8NE71 845 aaKnown RBP eCLIP43.14■■■■■ 4.5
CBX4-202ENST00000448310 PHF23Q9BUL5 403 aaPredicted RBP43.14■■■■■ 4.5
CBX4-202ENST00000448310 ROBO1Q9Y6N7 1651 aa43.13■■■■■ 4.49
CBX4-202ENST00000448310 SPHKAPQ2M3C7 1700 aa43.1■■■■■ 4.49
CBX4-202ENST00000448310 ADAMTS13Q76LX8 1427 aa43.08■■■■■ 4.49
CBX4-202ENST00000448310 TBX22Q9Y458 520 aa43.08■■■■■ 4.49
CBX4-202ENST00000448310 RRBP1Q9P2E9 1410 aaKnown RBP43.07■■■■■ 4.49
CBX4-202ENST00000448310 MSH6P52701 1360 aa43.07■■■■■ 4.49
CBX4-202ENST00000448310 DIP2AQ14689 1571 aa43.02■■■■■ 4.48
CBX4-202ENST00000448310 SLAIN2Q9P270 581 aa42.94■■■■■ 4.46
CBX4-202ENST00000448310 NAIPQ13075 1403 aa42.94■■■■■ 4.46
CBX4-202ENST00000448310 TRPM2O94759 1503 aa42.92■■■■■ 4.46
CBX4-202ENST00000448310 PIK3R4Q99570 1358 aa42.9■■■■■ 4.46
CBX4-202ENST00000448310 CLTCL1P53675 1640 aa42.89■■■■■ 4.46
CBX4-202ENST00000448310 NRXN3Q9Y4C0 1643 aa42.89■■■■■ 4.46
CBX4-202ENST00000448310 C14orf37Q86TY3 774 aa42.89■■■■■ 4.46
CBX4-202ENST00000448310 PHLPP1O60346 1717 aa42.88■■■■■ 4.46
CBX4-202ENST00000448310 ZNF326Q5BKZ1 582 aaKnown RBP42.87■■■■■ 4.45
CBX4-202ENST00000448310 PTPRUQ92729 1446 aa42.87■■■■■ 4.45
CBX4-202ENST00000448310 NCOA3Q9Y6Q9 1424 aa42.87■■■■■ 4.45
CBX4-202ENST00000448310 SIPA1L2Q9P2F8 1722 aaPredicted RBP42.86■■■■■ 4.45
CBX4-202ENST00000448310 RGS17Q9UGC6 210 aaPredicted RBP42.84■■■■■ 4.45
CBX4-202ENST00000448310 AMOTL2Q9Y2J4 779 aa42.83■■■■■ 4.45
CBX4-202ENST00000448310 SETBP1Q9Y6X0 1596 aa42.82■■■■■ 4.45
CBX4-202ENST00000448310 KIF1BO60333 1816 aa42.79■■■■■ 4.44
CBX4-202ENST00000448310 XRN1Q8IZH2 1706 aaKnown RBP42.77■■■■■ 4.44
CBX4-202ENST00000448310 NEXMIFQ5QGS0 1516 aa42.76■■■■■ 4.44
CBX4-202ENST00000448310 C19orf44Q9H6X5 657 aa42.76■■■■■ 4.44
CBX4-202ENST00000448310 HFM1A2PYH4 1435 aa42.75■■■■■ 4.43
CBX4-202ENST00000448310 TRIM52Q96A61 297 aa42.74■■■■■ 4.43
CBX4-202ENST00000448310 COL16A1Q07092 1604 aaPredicted RBP42.72■■■■■ 4.43
CBX4-202ENST00000448310 ATF3P18847 181 aa42.72■■■■■ 4.43
CBX4-202ENST00000448310 CADPS2Q86UW7 1296 aa42.72■■■■■ 4.43
CBX4-202ENST00000448310 METP08581 1390 aa42.7■■■■■ 4.43
CBX4-202ENST00000448310 JCADQ9P266 1359 aa42.66■■■■■ 4.42
CBX4-202ENST00000448310 AHDC1Q5TGY3 1603 aaPredicted RBP42.6■■■■■ 4.41
CBX4-202ENST00000448310 POTEAQ6S8J7 498 aa42.6■■■■■ 4.41
CBX4-202ENST00000448310 SLC4A1APQ9BWU0 796 aaKnown RBP42.6■■■■■ 4.41
CBX4-202ENST00000448310 DCCP43146 1447 aa42.56■■■■■ 4.4
CBX4-202ENST00000448310 BRINP3Q76B58 766 aa42.54■■■■■ 4.4
CBX4-202ENST00000448310 SETD1AO15047 1707 aaKnown RBP42.51■■■■■ 4.4
CBX4-202ENST00000448310 NALCNQ8IZF0 1738 aa42.51■■■■■ 4.4
CBX4-202ENST00000448310 MST1RQ04912 1400 aa42.49■■■■■ 4.39
CBX4-202ENST00000448310 FOXD1Q16676 465 aa42.49■■■■■ 4.39
CBX4-202ENST00000448310 LRP6O75581 1613 aa42.49■■■■■ 4.39
CBX4-202ENST00000448310 SHPRHQ149N8 1683 aa42.48■■■■■ 4.39
CBX4-202ENST00000448310 PPLO60437 1756 aa42.48■■■■■ 4.39
CBX4-202ENST00000448310 ADGRL3Q9HAR2 1447 aa42.47■■■■■ 4.39
CBX4-202ENST00000448310 ASXL1Q8IXJ9 1541 aa42.47■■■■■ 4.39
CBX4-202ENST00000448310 VGFO15240 615 aaPredicted RBP42.46■■■■■ 4.39
CBX4-202ENST00000448310 SPATA31A6Q5VVP1 1343 aa42.44■■■■■ 4.38
CBX4-202ENST00000448310 NHSL1Q5SYE7 1610 aa42.41■■■■■ 4.38
CBX4-202ENST00000448310 RPGRIP1LQ68CZ1 1315 aa42.41■■■■■ 4.38
CBX4-202ENST00000448310 MEX3CQ5U5Q3 659 aaKnown RBP42.37■■■■■ 4.37
CBX4-202ENST00000448310 ROBO2Q9HCK4 1378 aa42.35■■■■■ 4.37
CBX4-202ENST00000448310 PTCH1Q13635 1447 aa42.35■■■■■ 4.37
CBX4-202ENST00000448310 DDX17Q92841 729 aaKnown RBP42.31■■■■■ 4.36
CBX4-202ENST00000448310 CCDC144AA2RUR9 1427 aa42.29■■■■■ 4.36
CBX4-202ENST00000448310 SETD5Q9C0A6 1442 aa42.29■■■■■ 4.36
CBX4-202ENST00000448310 NUTM2BA6NNL0 878 aaPredicted RBP42.28■■■■■ 4.36
CBX4-202ENST00000448310 NUTM2EB1AL46 878 aaPredicted RBP42.28■■■■■ 4.36
CBX4-202ENST00000448310 NUTM2AQ8IVF1 878 aaPredicted RBP42.28■■■■■ 4.36
CBX4-202ENST00000448310 MPHOSPH9Q99550 1183 aa42.28■■■■■ 4.36
CBX4-202ENST00000448310 C1orf167Q5SNV9 1468 aa42.25■■■■■ 4.35
CBX4-202ENST00000448310 PRAG1Q86YV5 1406 aa42.24■■■■■ 4.35
CBX4-202ENST00000448310 RGL3Q3MIN7 710 aa42.24■■■■■ 4.35
CBX4-202ENST00000448310 IFT172Q9UG01 1749 aa42.23■■■■■ 4.35
CBX4-202ENST00000448310 ADGRF5Q8IZF2 1346 aa42.22■■■■■ 4.35
CBX4-202ENST00000448310 SPATA31E1Q6ZUB1 1445 aa42.21■■■■■ 4.35
CBX4-202ENST00000448310 LRRC59Q96AG4 307 aaKnown RBP42.2■■■■■ 4.35
CBX4-202ENST00000448310 ZNF772Q68DY9 489 aaPredicted RBP42.19■■■■■ 4.34
CBX4-202ENST00000448310 ORAI2Q96SN7 254 aa42.15■■■■■ 4.34
CBX4-202ENST00000448310 PNPLA6Q8IY17 1366 aa42.14■■■■■ 4.34
CBX4-202ENST00000448310 LAMC1P11047 1609 aa42.13■■■■■ 4.33
CBX4-202ENST00000448310 ANKRD30BQ9BXX2 1392 aa42.11■■■■■ 4.33
CBX4-202ENST00000448310 STK26Q9P289 416 aa42.08■■■■■ 4.33
CBX4-202ENST00000448310 AFF2P51816 1311 aa42.06■■■■■ 4.32
CBX4-202ENST00000448310 CDC42BPGQ6DT37 1551 aa42.05■■■■■ 4.32
CBX4-202ENST00000448310 PIK3C2GO75747 1445 aa42.03■■■■■ 4.32
CBX4-202ENST00000448310 TMEM132EQ6IEE7 984 aa42.02■■■■■ 4.32
CBX4-202ENST00000448310 SOS2Q07890 1332 aaPredicted RBP42.01■■■■■ 4.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms