RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 CCDC146Q8IYE0 955 aa10.78□□□□□ -0.68
NIPBL-202ENST00000448238 SAFBQ15424 915 aaKnown RBP eCLIP10.78□□□□□ -0.68
NIPBL-202ENST00000448238 CGNL1Q0VF96 1302 aa10.78□□□□□ -0.68
NIPBL-202ENST00000448238 RUFY2Q8WXA3 655 aa10.77□□□□□ -0.68
NIPBL-202ENST00000448238 PIP4K2AP48426 406 aaPredicted RBP10.77□□□□□ -0.68
NIPBL-202ENST00000448238 FAM114A1Q8IWE2 563 aa10.77□□□□□ -0.68
NIPBL-202ENST00000448238 ZWINTO95229 277 aa10.77□□□□□ -0.69
NIPBL-202ENST00000448238 TIMELESSQ9UNS1 1208 aa10.77□□□□□ -0.69
NIPBL-202ENST00000448238 CHIC2Q9UKJ5 165 aa10.77□□□□□ -0.69
NIPBL-202ENST00000448238 CPLX1O14810 134 aa10.77□□□□□ -0.69
NIPBL-202ENST00000448238 DAAM2Q86T65 1068 aa10.76□□□□□ -0.69
NIPBL-202ENST00000448238 ZKSCAN1P17029 563 aaPredicted RBP10.76□□□□□ -0.69
NIPBL-202ENST00000448238 BICD2Q8TD16 824 aa10.76□□□□□ -0.69
NIPBL-202ENST00000448238 POLR3GO15318 223 aaPredicted RBP10.76□□□□□ -0.69
NIPBL-202ENST00000448238 SETSIPP0DME0 302 aa10.76□□□□□ -0.69
NIPBL-202ENST00000448238 FILIP1LQ4L180 1135 aa10.76□□□□□ -0.69
NIPBL-202ENST00000448238 ZNHIT6Q9NWK9 470 aaKnown RBP10.76□□□□□ -0.69
NIPBL-202ENST00000448238 LETM1O95202 739 aaPredicted RBP10.76□□□□□ -0.69
NIPBL-202ENST00000448238 CCDC73Q6ZRK6 1079 aa10.76□□□□□ -0.69
NIPBL-202ENST00000448238 REC8O95072 547 aa10.76□□□□□ -0.69
NIPBL-202ENST00000448238 DCAF1Q9Y4B6 1507 aa10.76□□□□□ -0.69
NIPBL-202ENST00000448238 CENPHQ9H3R5 247 aa10.75□□□□□ -0.69
NIPBL-202ENST00000448238 TRDNQ13061 729 aa10.75□□□□□ -0.69
NIPBL-202ENST00000448238 BRMS1Q9HCU9 246 aa10.75□□□□□ -0.69
NIPBL-202ENST00000448238 TMF1P82094 1093 aa10.75□□□□□ -0.69
NIPBL-202ENST00000448238 SMC4Q9NTJ3 1288 aa10.75□□□□□ -0.69
NIPBL-202ENST00000448238 LRRCC1Q9C099 1032 aa10.74□□□□□ -0.69
NIPBL-202ENST00000448238 HSP90AB4PQ58FF6 505 aa10.74□□□□□ -0.69
NIPBL-202ENST00000448238 CENPJQ9HC77 1338 aaPredicted RBP10.74□□□□□ -0.69
NIPBL-202ENST00000448238 TAX1BP1Q86VP1 789 aa10.74□□□□□ -0.69
NIPBL-202ENST00000448238 CWC22Q9HCG8 908 aaKnown RBP10.74□□□□□ -0.69
NIPBL-202ENST00000448238 BMS1Q14692 1282 aaKnown RBP10.74□□□□□ -0.69
NIPBL-202ENST00000448238 TRIM21P19474 475 aaKnown RBP10.73□□□□□ -0.69
NIPBL-202ENST00000448238 ERICH2A1L162 156 aa10.73□□□□□ -0.69
NIPBL-202ENST00000448238 XBP1P17861 261 aa10.73□□□□□ -0.69
NIPBL-202ENST00000448238 MAP2K1Q02750 393 aaPredicted RBP10.73□□□□□ -0.69
NIPBL-202ENST00000448238 LUZP1Q86V48 1076 aa10.73□□□□□ -0.69
NIPBL-202ENST00000448238 KIF7Q2M1P5 1343 aa10.73□□□□□ -0.69
NIPBL-202ENST00000448238 PDCL2Q8N4E4 241 aa10.73□□□□□ -0.69
NIPBL-202ENST00000448238 RBM33Q96EV2 1170 aaKnown RBP10.73□□□□□ -0.69
NIPBL-202ENST00000448238 NUCB2P80303 420 aa10.73□□□□□ -0.69
NIPBL-202ENST00000448238 GTF2E1P29083 439 aaPredicted RBP10.72□□□□□ -0.69
NIPBL-202ENST00000448238 RCAN3Q9UKA8 241 aa10.72□□□□□ -0.69
NIPBL-202ENST00000448238 SSR1P43307 286 aaKnown RBP10.72□□□□□ -0.69
NIPBL-202ENST00000448238 CCDC181Q5TID7 509 aa10.72□□□□□ -0.69
NIPBL-202ENST00000448238 MICALCLQ6ZW33 695 aa10.72□□□□□ -0.69
NIPBL-202ENST00000448238 MAGEC2Q9UBF1 373 aaPredicted RBP10.72□□□□□ -0.69
NIPBL-202ENST00000448238 RSF1Q96T23 1441 aaPredicted RBP10.71□□□□□ -0.69
NIPBL-202ENST00000448238 SKIDA1Q1XH10 827 aa10.71□□□□□ -0.69
NIPBL-202ENST00000448238 LMOD3Q0VAK6 560 aa10.71□□□□□ -0.7
NIPBL-202ENST00000448238 NOL8Q76FK4 1167 aaKnown RBP10.7□□□□□ -0.7
NIPBL-202ENST00000448238 DNAI2Q9GZS0 605 aa10.7□□□□□ -0.7
NIPBL-202ENST00000448238 CC2D1BQ5T0F9 858 aaKnown RBP10.7□□□□□ -0.7
NIPBL-202ENST00000448238 MORC1Q86VD1 984 aa10.7□□□□□ -0.7
NIPBL-202ENST00000448238 PDILTQ8N807 584 aa10.7□□□□□ -0.7
NIPBL-202ENST00000448238 KIF3CO14782 793 aa10.7□□□□□ -0.7
NIPBL-202ENST00000448238 RGL3Q3MIN7 710 aa10.7□□□□□ -0.7
NIPBL-202ENST00000448238 MCM3P25205 808 aa10.7□□□□□ -0.7
NIPBL-202ENST00000448238 GTPBP4Q9BZE4 634 aaKnown RBP10.7□□□□□ -0.7
NIPBL-202ENST00000448238 ZNF330Q9Y3S2 320 aaPredicted RBP10.7□□□□□ -0.7
NIPBL-202ENST00000448238 CLGNO14967 610 aa10.69□□□□□ -0.7
NIPBL-202ENST00000448238 HIRIP3Q9BW71 556 aaPredicted RBP10.69□□□□□ -0.7
NIPBL-202ENST00000448238 CFAP45Q9UL16 551 aa10.69□□□□□ -0.7
NIPBL-202ENST00000448238 WDR66Q8TBY9 1149 aa10.69□□□□□ -0.7
NIPBL-202ENST00000448238 RRP9O43818 475 aaKnown RBP10.69□□□□□ -0.7
NIPBL-202ENST00000448238 NASPP49321 788 aaPredicted RBP10.69□□□□□ -0.7
NIPBL-202ENST00000448238 CCDC6Q16204 474 aa10.69□□□□□ -0.7
NIPBL-202ENST00000448238 DDX46Q7L014 1031 aaKnown RBP10.69□□□□□ -0.7
NIPBL-202ENST00000448238 CALCOCO1Q9P1Z2 691 aa10.69□□□□□ -0.7
NIPBL-202ENST00000448238 C6orf163Q5TEZ5 329 aa10.69□□□□□ -0.7
NIPBL-202ENST00000448238 SEPT10Q9P0V9 454 aa10.69□□□□□ -0.7
NIPBL-202ENST00000448238 PHLDB1Q86UU1 1377 aa10.68□□□□□ -0.7
NIPBL-202ENST00000448238 TMCO5BA8MYB1 307 aa10.68□□□□□ -0.7
NIPBL-202ENST00000448238 MAP9Q49MG5 647 aa10.68□□□□□ -0.7
NIPBL-202ENST00000448238 GBP3Q9H0R5 595 aa10.68□□□□□ -0.7
NIPBL-202ENST00000448238 CETN2P41208 172 aa10.68□□□□□ -0.7
NIPBL-202ENST00000448238 CCER2I3L3R5 266 aa10.68□□□□□ -0.7
NIPBL-202ENST00000448238 DHX16O60231 1041 aaKnown RBP10.68□□□□□ -0.7
NIPBL-202ENST00000448238 SOGA3Q5TF21 947 aa10.68□□□□□ -0.7
NIPBL-202ENST00000448238 FOXD4L5Q5VV16 416 aaPredicted RBP10.68□□□□□ -0.7
NIPBL-202ENST00000448238 FOXD4L4Q8WXT5 416 aaPredicted RBP10.68□□□□□ -0.7
NIPBL-202ENST00000448238 PAIP2Q9BPZ3 127 aaKnown RBP10.68□□□□□ -0.7
NIPBL-202ENST00000448238 SWAP70Q9UH65 585 aa10.68□□□□□ -0.7
NIPBL-202ENST00000448238 SMC1AQ14683 1233 aaKnown RBP10.67□□□□□ -0.7
NIPBL-202ENST00000448238 KTN1Q86UP2 1357 aaKnown RBP10.67□□□□□ -0.7
NIPBL-202ENST00000448238 TTLL5Q6EMB2 1281 aa10.67□□□□□ -0.7
NIPBL-202ENST00000448238 SDF4Q9BRK5 362 aa10.67□□□□□ -0.7
NIPBL-202ENST00000448238 PLEKHD1A6NEE1 506 aa10.67□□□□□ -0.7
NIPBL-202ENST00000448238 MRE11P49959 708 aa10.67□□□□□ -0.7
NIPBL-202ENST00000448238 TICAM2Q86XR7 235 aa10.67□□□□□ -0.7
NIPBL-202ENST00000448238 STIM1Q13586 685 aa10.66□□□□□ -0.7
NIPBL-202ENST00000448238 NEBLO76041 1014 aa10.66□□□□□ -0.7
NIPBL-202ENST00000448238 KIAA1328Q86T90 577 aa10.66□□□□□ -0.7
NIPBL-202ENST00000448238 DZIP1LQ8IYY4 767 aaKnown RBP10.66□□□□□ -0.7
NIPBL-202ENST00000448238 FOXD4L1Q9NU39 408 aa10.66□□□□□ -0.7
NIPBL-202ENST00000448238 HDGFL2Q7Z4V5 671 aaPredicted RBP10.66□□□□□ -0.7
NIPBL-202ENST00000448238 KINO60870 393 aaKnown RBP10.65□□□□□ -0.7
NIPBL-202ENST00000448238 TMEM132AQ24JP5 1023 aa10.65□□□□□ -0.7
NIPBL-202ENST00000448238 ERC1Q8IUD2 1116 aa10.65□□□□□ -0.7
NIPBL-202ENST00000448238 CRACR2AQ9BSW2 395 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms